LOC113528466 (LOC108276218,LOC108441001)


Basic Information

Item Value
gene id LOC113528466
gene name LOC108276218,LOC108441001
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13714400 ~ 13715455 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917037.2
TACATCAGCATCTCTGAATGCATGTAGGTGAATAGACAAGGTGCAGTCTCACAAGAGAAGCAGTGAAATCATTGCAGAATAAATTGAGCAGCCCAGAGCAGTACAGAACAGAGACGTGATCAGTCTCATGCTGCAGGTTGTGGCTATGAGATGGAAGCTGGAAAAGTGTACAGCAGCAACACTGTGCTTCAAGCTAGAAAAGCTGTGGAGCAGCTGAGACTGGAGGCCAACCTGGAAAGGATCAAGATCTCAGCTGCGGCTGCTCAGCTCGTGCAGTACTGTCAGGAGCACCGGCGTGGAGATCCACTGCTCACAGGCATCGCTGCCTCATCCAACCCATTCAAGGACAAGAAGACTTGTGTAATACTGTGAGAGTACAGAACCATGTCTATTATATGTACATATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917037.2 True 407 mRNA 0.48 2 13714400 13715455

Neighbor

gene id symbol gene type direction distance location
antkmt fam173a,LOC108276247 coding downstream 11873 13696613 ~ 13702527 (-)
xpo6 xpo6 coding downstream 19141 13670909 ~ 13695259 (-)
nme4 LOC108276282 coding downstream 44909 13662163 ~ 13669491 (-)
gadd45gip1 gadd45gip1 coding downstream 216237 13494986 ~ 13498163 (-)
swsap1 swsap1 coding downstream 279044 13432227 ~ 13435356 (-)
LOC113527894 LOC108278278,LOC108412261 coding upstream 48440 13763895 ~ 13809443 (-)
zgc:112183 rab37,zgc:112183,LOC108278300,LOC107665712,LOC107654586,LOC106606976,LOC105012908 coding upstream 100271 13815726 ~ 13833885 (-)
recql5 recql5 coding upstream 188703 13904158 ~ 13938439 (-)
arhgdia arhgdia,LOC107654583,LOC107665665 coding upstream 245046 13960501 ~ 13985023 (-)
alyref alyref coding upstream 271267 13986722 ~ 13989892 (-)
G210871 NA non-coding downstream 50603 13663416 ~ 13663797 (-)
G210858 NA non-coding downstream 53586 13591439 ~ 13660814 (-)
G210690 NA non-coding downstream 188820 13525381 ~ 13525580 (-)
LOC113528343 NA non-coding downstream 238938 13463539 ~ 13475462 (-)
G210640 NA non-coding downstream 267962 13445736 ~ 13446438 (-)
G210886 NA non-coding upstream 8096 13723551 ~ 13726829 (-)
G210888 NA non-coding upstream 16964 13732419 ~ 13786511 (-)
LOC113527951 NA non-coding upstream 24614 13740069 ~ 13747999 (-)
G210877 NA non-coding upstream 43071 13758526 ~ 13824293 (-)
G210915 NA non-coding upstream 153744 13869199 ~ 13869573 (-)
LOC117598755 NA other downstream 315175 13395466 ~ 13399225 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other downstream 318943 13390616 ~ 13395457 (-)
tom1 LOC108260160 other downstream 1155187 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 1375131 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 1398902 12297776 ~ 12315498 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 125711 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 278421 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 288714 14004169 ~ 14006512 (-)
pecam1 LOC108279165 other upstream 302160 14017615 ~ 14029641 (-)
G211151 usp36 other upstream 804822 14520277 ~ 14520975 (-)

Expression


Co-expression Network