rln3a (LOC108258150)


Basic Information

Item Value
gene id rln3a
gene name LOC108258150
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11826285 ~ 11828107 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917039.2
AAAATGACATTATAATTTAAAGGCAATAATGTCTGTTCATTATATTCTGTATTGCAACAGACTtggttattattaataataataataataataataataataatataaaagtttaTCTTATGATAACTCGAGTACCAGTGTGTCCAACCCAAAGTTTAAATGAAACCCATGCCActgacataaaataataaattcaatgTGTCCAGTTTAAGTGTGTTGGAGAGCGAGTGTAGTAAAAAGCCACAGACAATGTTATACACATAGAAAACAAATGCCAAGTGCGTTTACACATATAAATGTCCTTGTTAATCTGTTGCAACAGATTctcttgtttttcattttgggtGCTAGTTAATTATGCCTTTTCAGGTCACTGCTTTGTCTATGGAAAGGTCTCTGGTTTTGTATCATTGGGTTATCTGTGACTCTTCAGTCAGGTGGGTCTGTGTGACGAacactgtgtgggtgtgtgtgcacttttgtATCTGTCACACTCCTTTATAAAGGAGATCTGGGATTTAGGACAATCCAAAATCTCTTCGACCAAGCCAGAGCTACAACAGCCAGCATTAGAAGACGAGAAACTTATTGCCAACCTTCTACAGTTCTAACAGCCGTAGTTTTTCTCCAACTAATCCATTATGTGGAAAGCCACAGTGCTGGCTGTGTGTCTGCTACTGGCTGGAGTGAGGGCGTATGATGGACCCTCATATGGGGTGAAACTGTGTGGTCGTGAATTTATCCGCGCAGTCATCTTCACCTGCGGAGGCTCACGCTGGAGACGCTCCATCACAAGCACAGATGACCTGAGTGTAGACCCGTTTGGCTCAGACATCAGAGATGCTGCAGAAGGCTTGGTGCTGCCCTCTCACCCAAAGTTCTCCCTCCAGCATGACACTGAGCCCATCTCTTTCGAAATGGTGCAAGGAGGGCAGGAGGCCTCTGAGTTCAGTCGGCCTGCCCGCTCCATCATCTCAGATGAAGTACTGGAAGCCCTGCGCACCTCCAGCCGGAAGGGCCGGGATGTGGTAGTAGGACTGTCCAACGCCTGCTGCAAATGGGGCTGCAGCAAGAGCGAGATCAGCTCCCTCTGCTGAGTCCAGTCAAGCTAGCTCCTGTGtgtacgtgtttgtgtgtgtgtatgtgtttgggCGTTCCTTCCTCTTTTGGGAATTTGATTGTCCGTTGTCTTGATCCCCCCTAGATTAACATTGTTCCACAAAATGTTTATCTTTCTCAGTTTAACAGTGAGCTTATGCTTGTCACCAAACAGGTTACAATTCATAT

Function

NR:

description
relaxin-3-like isoform X1

GO: NA

KEGG:

id description
K22000 RLN3; relaxin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917039.2 True 1287 mRNA 0.44 2 11826285 11828107

Neighbor

gene id symbol gene type direction distance location
il12rb2l NA coding downstream 506 11810207 ~ 11825779 (-)
smarca4a smarca4,smarca4a,LOC108278850,LOC107658703,LOC107758124 coding downstream 17269 11790575 ~ 11809016 (-)
ldlra ldlr coding downstream 41238 11773079 ~ 11785047 (-)
kri1 kri1 coding downstream 62462 11753043 ~ 11763823 (-)
LOC113528652 NA coding downstream 70362 11755825 ~ 11755923 (-)
tmem104 tmem104,LOC107568246 coding upstream 135588 11963695 ~ 12012976 (-)
tnpo2 tnpo2,LOC108432206 coding upstream 187094 12015201 ~ 12032758 (-)
LOC113528656 NA coding upstream 197395 12025502 ~ 12025572 (-)
LOC113528185 LOC108275528,LOC103031371 coding upstream 319389 12147496 ~ 12153883 (-)
slc5a11 slc5a11,LOC107670676 coding upstream 361965 12190072 ~ 12200474 (-)
G209646 hmgxb4 non-coding downstream 161156 11664485 ~ 11665129 (-)
LOC113527962 NA non-coding downstream 200217 11619540 ~ 11626068 (-)
G209624 NA non-coding downstream 209097 11610634 ~ 11617188 (-)
G209618 NA non-coding downstream 225041 11600472 ~ 11601244 (-)
G209553 atp5h,LOC103042933,LOC101487002,LOC107599347 non-coding downstream 290588 11531576 ~ 11535697 (-)
LOC117598828 NA non-coding upstream 17466 11845573 ~ 11879417 (-)
G209829 NA non-coding upstream 240147 12068254 ~ 12068622 (-)
G209830 NA non-coding upstream 240706 12068813 ~ 12069180 (-)
G209832 NA non-coding upstream 242189 12070296 ~ 12070602 (-)
G209839 NA non-coding upstream 248565 12076672 ~ 12077073 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 125113 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 178288 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1355767 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 2093719 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2351807 9464331 ~ 9474478 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 469669 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 505747 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 718226 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 1562509 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 1567359 13395466 ~ 13399225 (-)

Expression


Co-expression Network