cacng1b (cacng1,cacng1b,LOC108412846,LOC107666105,LOC107724731,LOC107691235)


Basic Information

Item Value
gene id cacng1b
gene name cacng1,cacng1b,LOC108412846,LOC107666105,LOC107724731,LOC107691235
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10345265 ~ 10355473 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917043.2
TCTGTGGACAACGAGCTGCAGTGAGGAATCTGTGGGTTGCTGTGTTGAGTTTTGGATTTAGCCCACAGACCCATAGCATAAGAGTAAGGGGGAAAAGTATACCACCTGCCTGCTACTTGCTGAGCGTAACTGCTGCACAACCATGCTGAAGGACAAGAAGACCAAGGTGAAGATCACCTTCTTGGTCATTGTTGTGGGCATCTCATCCATGCTTGCAGCCGTGGTGACAGATCATTGGGCCGTGCTGAGCCCCAGAGTAGAAAAACTTAACACCACCTGTGAAGCAGCCCACTTCGGGCTTTGGAGGCTCTGCAAGAAGAGTATCTTCATTGTGGAGGAAGACCCTCAGGGCAAAGGCTGTGGCCCCATCAGCCTGCCTGGAGTCAAGAACTGCTCCTACTTCAAACACTTTACGTCAGGGGAGGAGGCCGAAGTTTTCGAAGTCAAGACTCAAAAAGAGTACAACATCTCAGCTGCTGCCATAGCCATCTTCAGCCTGGCCTTCATGACACTGGGCAGTCTGTGTCTCCTAGGGGCCTTTGGAAAGAGCAGAGACTACCTACTAAGACCGGCTGGCATGTTCTTCGCATTTGCAGGTCTCTGCATAGTCATTTCAGTGGAGGTCATGAGACAGTCTGTCAAACGCATGATTGACAGCGATGAAACCATCTGGATCGAGTACTACTACTCGTGGTCCTTTGCATGTGCCTGCGCTGCCTTCATCCTCTTGTTCCTCAGCGGGATCAGCCTGCTGATCATCTCCATGCCTCACATGCCACGGAACCCGTGGGAGACCTGCATGGACGCTGAGCCTGAGCCCATGGACTAGCAGAGCGCCTTTACCAGTCAAATCAGGGTTTGGCACACAGTAAGAATGCATGATAAAGAAATCAACACATACAAGGTGTTGTAAGAGAGTTTTATATTGACTTTGGCATTGTGTTCATTGGAAGCAAATGCATTCATGCTTAGAGGAGGTTAAGTCTGCTGTTTTAGACAACAAAGTAGCATTTCATCCAGTGTCAGAATTTCCATATGTGATGcttttttgattcatttgactTAGGATTTTGCAATTGTGAAATATTCTTTAAGGTTCACTATGCTATGCGAAGTGGAATTGAGGATGCAAGTATGTATTTTTCATTACCCATATAGCCCAGTTCTCTGggtatttctttaaataatttgatGTTTTAGTAAAGGTTTATAATTTAGGATAATTAAGATTGCTCTATATTATGACACCACTATTCATTATTACATAATGAAGAGCAAGAAACATCTACTGCAAAATTAATTCTCTGTGTAATAAAACAACTTAAGAACAACTGAGATCTTGAGATGCATAAAATGACTCATAATCaaatgtgtggtggtctgggaaactTGTCGGATGTCACAgcggctgaattctggaaaacagctgaaaaaaaaggttttttccCAGATCAAAATTTATGGCCTTTTCAAGAAAccatatgtacactatatggccaaaagtatgtggatgccTGATCATTACAGccatgtgggccttccccaaactgctgctgCATTTTTCAAAGGGCTAGACCTCATCAAAATACAGTCATATatatatctagatgtgttaaacaacttagaacaatAATTGTAGAACTTACaataatcaaaaatattggaacatgtgactgacaggtgtgccctgttagactgattgtttaaacaactAATATCTCTGAATGTCTACACTTTGTTTGAGCTCTGGGTTTTGCCTTTAAAGAAGGTGTTGAAAGGATAAATCAACATGAAGCCTAGAgggctgtctatgggagaaaagcaagccattttgaagctaagaaaagaaggaaaactgATCAAAGCtgttgc

Function

symbol description
cacng1b Predicted to enable calcium channel regulator activity. Predicted to be involved in regulation of calcium ion transmembrane transport via high voltage-gated calcium channel. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of L-type voltage-gated calcium channel complex. Human ortholog(s) of this gene implicated in malignant hyperthermia. Orthologous to human CACNG1 (calcium voltage-gated channel auxiliary subunit gamma 1).
cacng1 Predicted to enable calcium channel regulator activity. Predicted to be involved in regulation of calcium ion transmembrane transport via high voltage-gated calcium channel. Predicted to act upstream of or within calcium ion transmembrane transport and sarcoplasmic reticulum calcium ion transport. Predicted to be located in T-tubule. Predicted to be integral component of plasma membrane. Predicted to be part of L-type voltage-gated calcium channel complex. Implicated in malignant hyperthermia.

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-1 subunit-like

GO: NA

KEGG:

id description
K04866 CACNG1; voltage-dependent calcium channel gamma-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917043.2 True 1872 mRNA 0.43 4 10345265 10355473

Neighbor

gene id symbol gene type direction distance location
pitpnc1a LOC108274028,LOC108412868,LOC107691236,LOC107665814,LOC107752702,LOC106903613,LOC107743029 coding downstream 49142 10230636 ~ 10296123 (-)
dxo dxo,LOC106601672,LOC106606733,LOC107666098,LOC107743041,LOC107691245,LOC107752708 coding downstream 115866 10223395 ~ 10229399 (-)
anks4b anks4b coding downstream 131854 10209348 ~ 10213411 (-)
si:ch211-256e16.3 si:ch211-256e16.3,LOC108260968,LOC108412900,LOC107717492,LOC107552129,LOC107674048,LOC106601741 coding downstream 138051 10197508 ~ 10207214 (-)
mosmoa c17h16orf52,c16orf52.L,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 coding downstream 160164 10146848 ~ 10185101 (-)
cacng4b cacng4b,LOC108259704,LOC107691234,LOC107565862,LOC108412836,LOC107713946,LOC107548710 coding upstream 4713 10360186 ~ 10373055 (-)
aimp2 aimp2,LOC106601790 coding upstream 25720 10381193 ~ 10384307 (-)
trnac-gca_22 NA coding upstream 29576 10385049 ~ 10385120 (-)
pvalb8 prvu,pvalb8,LOC103030409,LOC108412252,LOC107691229,LOC107548708,LOC103141687,LOC103141679,LOC103469263 coding upstream 48307 10403780 ~ 10407080 (-)
pvalb4 LOC100305042,LOC107724737,LOC108412813,LOC107665849,LOC107548706,LOC103030720 coding upstream 57532 10413005 ~ 10414768 (-)
G208951 NA non-coding downstream 3043 10341911 ~ 10342222 (-)
G208771 NA non-coding downstream 54380 10221710 ~ 10290885 (-)
G208758 NA non-coding downstream 158013 10187036 ~ 10187252 (-)
G208649 NA non-coding downstream 278909 10063977 ~ 10066356 (-)
LOC117599011 NA non-coding downstream 417323 9829627 ~ 9927942 (-)
G208964 lmtk2 non-coding upstream 92263 10447736 ~ 10450540 (-)
G208980 NA non-coding upstream 162869 10518342 ~ 10518947 (-)
G208998 NA non-coding upstream 278062 10633535 ~ 10634150 (-)
G209189 NA non-coding upstream 733540 11089013 ~ 11144984 (-)
LOC113528410 NA non-coding upstream 863186 11218659 ~ 11221378 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 612699 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 870787 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 925681 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 1141625 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 1202394 9112966 ~ 9142871 (-)
tecpr1b LOC108276900 other upstream 95251 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1286684 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1344376 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 1942303 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 1978381 12333854 ~ 12339269 (-)

Expression


Co-expression Network