hcrt (hcrt)


Basic Information

Item Value
gene id hcrt
gene name hcrt
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6550541 ~ 6555884 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917049.2
CGTTCACGTCATCTATATGCACTATACGTAAATAAACACGTACGTGCTATTGTCTGTGAAAGATCATGATTAGAATATGGTGGTAATTCTCAATACAGCGATACATAACAGTCATTAGCATTAACCACTCTCTAACCCAGACAAAAGCTCCCTCCCTGCATCCTCATTACCCTTTACCTTCTTCAGGCCTGTGATGACTCCCgtcttctttcatttctgtcCTGTTAGTGCTAATCACTGACTTAATGGCATGTGTTTACGAAGCACACACAATACTGCCCCAGAAGTCTCCATGAAGCTCTATGGATACCTGAAGCTGTGCATGCCGATTAGCCCGTTAATGATCAAAACCACAAACATTCTGACAGAGTATCACAATCCAGCTCTTAAATGAGCAACATGAGAATAAAGGAGATGGGGCAGAGTAACGGCATCAGGTGGTTGGCTTTGTTAGGATAATTTCATCAGGCTACGTCAGCAGTAAGGAGATGCATAGTATATAAACAATCCTCATTTTCTCACGAAAACAGAGATCATTAGGAGCCTTATTCTAGGATGGCACATGTCCATATCAAGCAAAGAAGAGCAATGAGACCCCTGGGTGCCTCTTCGGCTAAGCTCGTGCTCTTCCTCGCGCTGATGACCCAGCTCACCTGTGACGCAGACGCGATGACGAGCTGCTGCACGCGGAAGCCGCACCCGTGCTCGCTGTATGAGTTACTGTGTCGCGCGGGACACCGGAACCTCACCGACCCGGACGGGAAACTGGGCCGCCTGAGCAGCGACGCCGCCGCCGGGATCCTCACACTCGGCAAGCGGAAAGCGACCGAAAGCCGGTACCAGGACCGACTGCAGCATCTTCTGCACAGCTCGCGCAACCAGGCTGCGGGGATCCTTACTATGGGCAAGAGAGGCGCAGAGAGCGGACTCGGTACCGTTCACACAGCCGTTAAACTGGACCTCGAAAGACCACTGAAATACCTGATGCAGCCTGCAGACAGAGCCTCATACGAACAATGACTCTGATCCTCTGTTCACTGATCCTACTCTAAAACAACATTCTCATTACTAGCCTGATCCATTGAGCTAGAGATAGCTGTTGTGatgaatatttctgtatatGCATTGCGTTACTGCATCTTCCTTACTCTAGTCAGGACTCAGGATTAGTCTGAATCATCTACTGTGTACATTATTTTTCAGACTGATTCATAGTTATTTGTGTGTAATGCCTCAAACGGCCACAAGGTGGCAGAgttgtatcatattgtattttacatataataaaGTAATGAAATGAACATGAATCATTAACAATGTTAACAATGACAAAAAGAAGTG

Function

symbol description
hcrt Predicted to enable neuropeptide hormone activity; type 1 hypocretin receptor binding activity; and type 2 hypocretin receptor binding activity. Acts upstream of or within several processes, including circadian sleep/wake cycle, wakefulness; multicellular organismal response to stress; and sleep. Predicted to be located in endoplasmic reticulum. Predicted to be active in perinuclear region of cytoplasm. Is expressed in brain; female organism; hypocretin-secreting neurons; male organism; and spinal cord. Human ortholog(s) of this gene implicated in narcolepsy. Orthologous to human HCRT (hypocretin neuropeptide precursor).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0042746 circadian sleep/wake cycle, wakefulness biological_process
GO:0042594 response to starvation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917049.2 True 1341 mRNA 0.47 2 6550541 6555884

Neighbor

gene id symbol gene type direction distance location
kcnh4a kcnh4,LOC107568301 coding downstream 2040 6506704 ~ 6548501 (-)
rab5c rab5c,LOC104958098 coding downstream 49071 6483671 ~ 6501470 (-)
kat2a kat2a,LOC107755568,LOC107729177,LOC107690294,LOC107687008 coding downstream 69257 6468354 ~ 6481284 (-)
dhx58 dhx58 coding downstream 82644 6461123 ~ 6467897 (-)
znf385c znf385c coding downstream 107259 6350664 ~ 6443282 (-)
si:ch211-210g13.5 si:ch211-210g13.5,LOC108256246,LOC108441607,LOC107729192,LOC107687011,LOC103359488 coding upstream 1254 6557138 ~ 6632345 (-)
stat3 stat3 coding upstream 178233 6734117 ~ 6764914 (-)
cavin1a ptrf coding upstream 217549 6773433 ~ 6793535 (-)
atp6v0a1a atp6v0a1,LOC107567567,LOC105890791 coding upstream 238470 6794354 ~ 6820369 (-)
stk17al LOC108258001 coding upstream 291011 6846895 ~ 6860907 (-)
G206649 NA non-coding downstream 204178 6273816 ~ 6346363 (-)
G206628 NA non-coding downstream 346345 6203312 ~ 6204196 (-)
LOC113527891 NA non-coding downstream 360615 6187474 ~ 6189926 (-)
LOC113528476 NA non-coding downstream 597037 5952798 ~ 5953504 (-)
G206210 NA non-coding downstream 822861 5721634 ~ 5727680 (-)
G206924 NA non-coding upstream 269012 6824896 ~ 6825760 (-)
G206923 NA non-coding upstream 270484 6826368 ~ 6828146 (-)
G207057 NA non-coding upstream 546364 7102248 ~ 7102389 (-)
G207198 NA non-coding upstream 620648 7176532 ~ 7176755 (-)
G207221 NA non-coding upstream 671501 7227385 ~ 7227664 (-)
G206604 NA other downstream 355545 6126910 ~ 6194996 (-)
LOC113528542 NA other downstream 589491 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 599544 5940862 ~ 5950997 (-)
G206282 NA other downstream 709064 5841137 ~ 5841477 (-)
G206236 NA other downstream 793808 5754767 ~ 5756733 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other upstream 90174 6646058 ~ 6726165 (-)
G207231 spsb3 other upstream 762719 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 869833 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 1003883 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 1694001 8249885 ~ 8267638 (-)

Expression


Co-expression Network