LOC113528481 (zgc:112320,LOC108275843,LOC101168622)


Basic Information

Item Value
gene id LOC113528481
gene name zgc:112320,LOC108275843,LOC101168622
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14463405 ~ 14465291 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917053.2
ATGCAGACAGTCCACTCTGTATCCATCACTTTCATCCATGAGCCTACAAACAAAGCCTGAATTCATGAATGTGGAAATGTCCAAGTCTGAACACAAAGCTGGCAGCAAGATGGCAACCCGAGCCACAGGGTCTGGATCTCCACACAAGGGCCCACCGCGGTTCAAACAGAGATCCACCCGGCAGTTCAAAAGCAAACCACCCAAGAGAGGCGTCATCggatttggTGATGAAATTCCTGGAATGGAAGGCTTGGGAACTGATATCACTGTGATCTGCCCCTGGGAAGCATTCAGTCATCTGGAGCTGCATGAATTATCTCAGTATGGCatcatctgagaaaaaaaaatatctgtactACATAGAGTTCTGTTCCTCTATCTAGCAGTAAGCAGTGGATTTCTACATTCATAGTTTAGAGGATGAAAAGGGGAACAAAGggaaaaacataacataaaaaacaATCATCATATATTAGGAGATATAGATTTCTAGTATATAATGGTGAAATTACTCAGGGTGGATAGCCATATAGTACATGTGCACactctaaaaaaataaaccctAAAGATTTGTCCATCTAAGGAAACCCTTAAAGCTTGTTTGTAGAATCGTAGAACacagtgtttccctatcaggtAGGGTTCCATGTAGAACATGCCAAGGATGCTTCATTTTTCCAAAGATCACCTGAGATATCATTTTAAAGATCAAGTGAGCgctgtatttaaatatttattcatagtATGTTTACTAGAGTGACTGATTCTAAACTTTAACactacagtatttatttagctcttatttttactttatgtacaaaaaataattcagtttttctTGTGGTGCAGTTTCTTTCAACAATACACCAAAATATTTCTGCATGTATTCAAGTTTTCTTTGAGTAATTCTTGAGATTCTGAacacaacaaaatatttggGATGGAAATATGTATCTGGTCCTGttctacattttaaacacagtatttctttgaatttcagctttattatCATAGTGTGACTCTCATGTGCCACTCTTGCTTTTAAGAGCAGCTCTCTCAGTAGTggaaattgttcatttttttaatgttacggTCCTGATTGAATTTGATTAagcaaaaatcatttaaaagtaaatgtttattttcatgtcttcAAGCAGCCATATGGGTCTTGTCTAAAATCAGTTGAGTGCTGTGGTTGTGTTTGTTTACTGGCCTTATGGTGCTTCTGCACTGGAGGACAAGCAAGACCCACAATCAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0030553 cGMP binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917053.2 True 1261 mRNA 0.37 3 14463405 14465291

Neighbor

gene id symbol gene type direction distance location
si:dkey-282h22.5 LOC108261121 coding downstream 11810 14447240 ~ 14451595 (-)
LOC113528545 LOC108255936,LOC103153053 coding downstream 30685 14414913 ~ 14432720 (-)
LOC113527937 LOC108255917 coding downstream 52728 14394229 ~ 14410677 (-)
prpsap1 LOC105013149,LOC108255900,LOC106606986,LOC103375364,LOC101163819,LOC100700674,LOC108435871,LOC107731682 coding downstream 72311 14379035 ~ 14391094 (-)
LOC113528592 LOC108256535,LOC108435873 coding downstream 260847 14183537 ~ 14202558 (-)
LOC117599009 NA coding upstream 22530 14487821 ~ 14490775 (-)
LOC113528386 LOC108274059,LOC105908958,LOC108437141 coding upstream 226902 14692193 ~ 14709079 (-)
fscn2a LOC108274411,LOC108437142 coding upstream 267612 14732903 ~ 14738583 (-)
LOC113528036 LOC108255868 coding upstream 303316 14768607 ~ 14840369 (-)
LOC113527964 LOC108260935 coding upstream 410044 14875335 ~ 14878123 (-)
G211054 LOC108275544 non-coding downstream 996 14461792 ~ 14462409 (-)
G211003 NA non-coding downstream 133485 14329586 ~ 14329920 (-)
G210997 mgat5b,LOC108274344,LOC108435872 non-coding downstream 165207 14294307 ~ 14298198 (-)
G210973 NA non-coding downstream 246533 14216673 ~ 14216872 (-)
G210952 NA non-coding downstream 328101 14135094 ~ 14135304 (-)
G211187 NA non-coding upstream 123529 14588820 ~ 14594664 (-)
G211195 socs3 non-coding upstream 153941 14619232 ~ 14621782 (-)
G211269 NA non-coding upstream 361944 14827235 ~ 14844312 (-)
G211274 NA non-coding upstream 381961 14847252 ~ 14847456 (-)
G211346 NA non-coding upstream 469378 14934669 ~ 14935121 (-)
pecam1 LOC108279165 other downstream 433764 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 456893 14004169 ~ 14006512 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other downstream 462368 13993876 ~ 14001037 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other downstream 592274 13841166 ~ 13871131 (-)
LOC117598755 NA other downstream 1064180 13395466 ~ 13399225 (-)
G211151 usp36 other upstream 54986 14520277 ~ 14520975 (-)
LOC113528445 LOC108274755 other upstream 213459 14678750 ~ 14690132 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other upstream 513328 14978619 ~ 14986112 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 1685784 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 2107254 16572545 ~ 16598688 (-)

Expression


Co-expression Network