nfatc2ip


Basic Information

Item Value
gene id nfatc2ip
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9045645 ~ 9049091 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917054.2
aaaagaatggCTCGcgcgccgccgccgccgcttCCGGGTTTGTTCTGAACTCCTATTGGCTGAGAATTAACTTCCGCCTCCACACAGCGGTGACGCGCGGAATTTAAACATGGCTGAAGTGGCAtatgacagtgacagtgataTTGAGGTTATGGCACAGAGCCGCCCAAATCCACCTCCCAAACGAAGGCGTGTCCTCGACCCTTCAGCCATCATACCTGTGCCCATTTATTCCAAAAAGGTCACCCGCAGCCTACAACTGAATCCAGCTGTCTTCAAACAACTAGACTGCACAGAGGTAAATGAAGACGAAGACAGACTCTGGCCTCCATTTCCACCCAAAAGTAAGAACAAGCCAATCAGCATAATCCTGAGTGACTCTGAGGAGGAGCCAGAACCAGATAAACCTCAACTGGTGAGCCAGACCCCCTCTTCACCTCCACCTCACTGCATCCCAACTGCTTTGAAAACTAACCgggcaaacaaaaaaataagaCAAATCAACCAGAAACTGGATACATTTAGCTCGCTCATGTGTTTAACATCCAAAAGACCTGAAGATATTCCAGACTTCAGTGACTGTCCCTCCCAAATAAACAAGTGCTATGATGATGACAACGACATTATAATCATTTCCTCTGAGGACAAAAAGAAGAGACGTCCAGCCAAACCTAAGCCCAGAAAACGTGCTCGAGAAATCTCACTGAAATTTCGCTGGAGAATGGACGTGCACAAAATTCCAGTGCTTTCAACAGATCCTCTGAGCAAGGCTGTAGCTCAGTTATCTGTCAAACTTAAAGTCCCACCCTCTAAAATACTGCTAATGCGGAATGATGATGAGCTTCCTGTGCACTCTACAATCACGCAGTTAGATCTGGGCATTGCAGACATCATAGATTGTCTTGTGAAaactgatgatgaagatgaaagcAAATGTGATGTCATCACTGTGCGACTGCAGGGCAAAGAAAAAGGATCTGCACAGGAATATTCCTTGCGTACGGATGCTCCTCTGGATTCCATCCTGTCACAATACACTTCAGGTCTGTCTGCCACTGCTAAGCGCAAGGTCAAATTCCTCTTCGATGGGTTAAAGGTGAAGCACAATCAGACACCTTCACAGCTGGACATGGAGGATGGTGATGTCATTGATGTCTGGGCCTGATTTCTGTAACAATGATGTTTCATATCAACTGcctcctttgcttttttttcttcctgaggTTAAAATTAGagtgtatatttaaattttgtctAATTTAAAAGTGTACATATATTTCTACATCATGTAAAcggttttttaaatatacatattagtGACAATAATAAAAGATTTGCTGTTA
>XM_034309673.1
ACAGCTTACGTGCTGTGATCGCGAGTCTTGGTGTGATTCCTCTGTTAGTGATCTGTGGTTAGCTTGCTAGCATCATAGTAACATCATAGCTACACTATGAGGCAACCCCCAGCTAACTCAGTAACAGTTTCAGAAGAAATCATGAACCACATGGCTCAGTTCAGGCTCACAGTACAGAAAGACCCACCAGTGGTGTTTGTGTACCAGCTATAGATGTGTAGCTAAAGTTACTGGGCAtatgacagtgacagtgataTTGAGGTTATGGCACAGAGCCGCCCAAATCCACCTCCCAAACGAAGGCGTGTCCTCGACCCTTCAGCCATCATACCTGTGCCCATTTATTCCAAAAAGGTCACCCGCAGCCTACAACTGAATCCAGCTGTCTTCAAACAACTAGACTGCACAGAGGTAAATGAAGACGAAGACAGACTCTGGCCTCCATTTCCACCCAAAAGTAAGAACAAGCCAATCAGCATAATCCTGAGTGACTCTGAGGAGGAGCCAGAACCAGATAAACCTCAACTGGTGAGCCAGACCCCCTCTTCACCTCCACCTCACTGCATCCCAACTGCTTTGAAAACTAACCgggcaaacaaaaaaataagaCAAATCAACCAGAAACTGGATACATTTAGCTCGCTCATGTGTTTAACATCCAAAAGACCTGAAGATATTCCAGACTTCAGTGACTGTCCCTCCCAAATAAACAAGTGCTATGATGATGACAACGACATTATAATCATTTCCTCTGAGGACAAAAAGAAGAGACGTCCAGCCAAACCTAAGCCCAGAAAACGTGCTCGAGAAATCTCACTGAAATTTCGCTGGAGAATGGACGTGCACAAAATTCCAGTGCTTTCAACAGATCCTCTGAGCAAGGCTGTAGCTCAGTTATCTGTCAAACTTAAAGTCCCACCCTCTAAAATACTGCTAATGCGGAATGATGATGAGCTTCCTGTGCACTCTACAATCACGCAGTTAGATCTGGGCATTGCAGACATCATAGATTGTCTTGTGAAaactgatgatgaagatgaaagcAAATGTGATGTCATCACTGTGCGACTGCAGGGCAAAGAAAAAGGATCTGCACAGGAATATTCCTTGCGTACGGATGCTCCTCTGGATTCCATCCTGTCACAATACACTTCAGGTCTGTCTGCCACTGCTAAGCGCAAGGTCAAATTCCTCTTCGATGGGTTAAAGGTGAAGCACAATCAGACACCTTCACAGCTGGACATGGAGGATGGTGATGTCATTGATGTCTGGGCCTGATTTCTGTAACAATGATGTTTCATATCAACTGcctcctttgcttttttttcttcctgaggTTAAAATTAGagtgtatatttaaattttgtctAATTTAAAAGTGTACATATATTTCTACATCATGTAAAcggttttttaaatatacatattagtGACAATAATAAAAGATTTGCTGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917054.2 False 1343 mRNA 0.44 9 9045645 9049091
XM_034309673.1 True 1456 mRNA 0.43 9 9045645 9048922

Neighbor

gene id symbol gene type direction distance location
spns1 spns1,LOC107754623,LOC107567150,LOC107660866,LOC107552478,LOC107739389,LOC107689070 coding downstream 1509 9032844 ~ 9044136 (-)
lat LOC108257259 coding downstream 13613 9022546 ~ 9032032 (-)
pitpnbl pipnb,LOC108410611,LOC103031125,LOC107552474,LOC107739385,LOC105028335,LOC106600642,LOC107754658 coding downstream 62268 8973287 ~ 8983377 (-)
sez6l2 sez6l2,LOC107660756 coding downstream 92326 8937563 ~ 8953319 (-)
kctd13 kctd13,LOC107739382,LOC107567055,LOC107552471,LOC107660789,LOC107755045 coding downstream 109105 8929611 ~ 8936540 (-)
sgf29 sgf29 coding upstream 682 9049773 ~ 9056443 (-)
si:dkey-93n13.2 LOC108274046 coding upstream 55210 9104301 ~ 9120154 (-)
zgc:66443 LOC108261131 coding upstream 95483 9144574 ~ 9152008 (-)
LOC113527879 LOC108274494,LOC107552447 coding upstream 109285 9158376 ~ 9166233 (-)
mvp mvp,LOC107739398 coding upstream 119291 9168382 ~ 9184513 (-)
G208153 NA non-coding downstream 14667 9030525 ~ 9030978 (-)
G208151 NA non-coding downstream 20662 9024761 ~ 9024983 (-)
G208145 NA non-coding downstream 38386 9007000 ~ 9007259 (-)
G208099 NA non-coding downstream 87434 8957261 ~ 8958211 (-)
G208098 asphd1 non-coding downstream 89248 8955866 ~ 8956397 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding upstream 12489 9061580 ~ 9063507 (-)
G208189 NA non-coding upstream 53820 9102911 ~ 9103126 (-)
LOC117598997 NA non-coding upstream 392895 9441986 ~ 9446104 (-)
G208391 NA non-coding upstream 445532 9494623 ~ 9505750 (-)
G208473 NA non-coding upstream 697405 9746496 ~ 9748039 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 332327 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 755837 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 761053 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 778007 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1340153 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 63875 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 147405 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 360713 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 415240 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 680760 9729851 ~ 9732566 (-)

Expression


Co-expression Network