cdr2l (cdr2l,LOC107743016,LOC107665638)


Basic Information

Item Value
gene id cdr2l
gene name cdr2l,LOC107743016,LOC107665638
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13945365 ~ 13960351 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917057.2
agcgaGGACCGGAGCCAGCCACCTCACCATCTGCACGAGCCGAACGGGATGTCGGGAAGTCGACAAAGAGGACGGGGAGCTTCATCCTGATCAGTGCAGAAGAAGCTGGTGAAGATCATCTGCTGCTGTAGGAGAAGTGCCTGATGCTCAGATCCAGcaggatggaggagtttgtGACTGAAGAGGACGAGCCATGGTACGACCAGAGAGACCTGGAGCAGGATCTGCACTTGGCAGCAGAGCTAGGGAAGACCCTTCTGGAACGCAATAAGGAGCTGGAGGACTCGCTGCAGCAGATGTACATCACCAATGAAGAGCAGGTGCAGGAGATTGAGTACTTGTCCAAGCAAGTGGAGATGTTACGGGAGATGAATGAGCAGCATGCAAAAGTCTATGAGCAGTTGGACGTGACAGCTCGAGAGCTTGAGATCACCAATGAGAAGCTGGTGTTGGAAAGCAAGGCTTCACATCAGAAAATAGACAGGTTGACGAGCACCATGGAGATGCTGCAGGGCCAGGTGGACACACTGACTGCCCGTGTAGAGGAACTGCGCACACTTGAAGAACTCAGGGTTCGCagggagaagaaagagagacgaAAAACTGTGCACTCTTTCCCTTGCCTCAAGGAGCTCTGCACCGCACCCAGGTATGAGGATGGATTCAGGGTGTCTGACCCAGGTAGTGGTGACCTGCAAGAGCGGCGGCCGGCAGATGAAGAAAATGAGCACCTGCGTGCACTGGTTGCGTCTCTCCGTGCAGCTGTATCAGCCGAACGTGGGCGACGGGAGAATGCAGAGCGTGAGTGCACCGCCGTGCTGCAGGAGTTTGAGCGCTTGGAGCAGCGACTTCTGGGTGCCGAGGGTTGCCAACAACGTGTCCATGAGCTGGAGGCAGAGCTGCAGGAGCTACAGCAGCTACGCAAGTCGCGTGCCTGCTTACTGGTTGCTGAGGATGGCCTGGAGCAGACGCTGCTCAGCAGTGCCCCGGAAACAGATACGGTGGAGGATGTTGCAGGTGCAACACAAGAGAGCTCTGGTGAACCCCCAGTACGCAAGAGCTGTAGTGACACAGCACTGGACGTCATCTCAGCGGTAGATGCCTCTGGACGACGCAAGGGCAGCTACGCACTCCATGCCAATGGTGTGCGCAAGCGTGGCATGTCCATCTTGCGTGAAGTGGACGAGCAGTACCATGCATTGCTCGAGAGGTATGAGGAGCTGCTGGGCAAGTGCCGGCGCCATGAAGAGAGTCTGCGCCATGCCGAGGTACAAACTTCACGGCCTGTCTCCAGAGACCCGTCCATGAAGGAGTGTCGTGCAACGGAGGCCGCAACACAGCCAGGCACGCCACCGCAAACACCCTCAACACCTGAGGCCATGGAGGGCATCAGCCGGCAGGTGGAGGCTGTGGACAAGCGGCTGAGCCAGAACACACCTGAGTACAAGGCTCTGTTCAAAGAGATCTTCTCACGCCTGCAGAAGACCAAGACCGACATCAACTCCACCAAAGGGAGGAAAAGTGGGAAATAGCTCTTGGCTTTTTTTGCTCAGAGGAATGCATGGTAGGATCTATTGTTCTACCTCAATTAAGACCACAGTCTTAATTGTTTAATTGGCCAGATCAGATTCAGTAAGCTGGCGTCTGAAAAGGATTCATGCTAGTGCAGAGCTAATGGGTAGAGTAGAATATCGGGGCTTACTTGCCACGTTAGTGCACCTCAGATGAGGACGAGCATTGACAAAGCAGGTCATGTCTGATGGATCTTTCTttggttgtttgtgttttaaggAAGATTTAAGATTGTTTCTCACTGTTGGTTTTCCTGGAACTTAACCTACTACCAGGGtacctgtatttaaaaaaaaaaaaaaaaaaaggcacaccACTGCTTATTCTTCCTATTTCCGTAACTGTATGTAACAACCTCTATTCTGTAATCATCTCTTTCCAATATTAAAGACGCTTTGCTTATAA

Function

symbol description
cdr2l Is expressed in several structures, including nervous system; neural plate; otic vesicle; presumptive diencephalon; and presumptive telencephalon. Orthologous to human CDR2L (cerebellar degeneration related protein 2 like).

NR:

description
PREDICTED: cerebellar degeneration-related protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917057.2 True 1977 mRNA 0.53 6 13945365 13960351

Neighbor

gene id symbol gene type direction distance location
si:ch211-120g10.1 si:ch211-120g10.1,si:ch73-364h19.2,LOC108279991,LOC108435881,LOC107558873,LOC107548722,LOC107748865,LOC107665693,LOC107654584 coding upstream 42254 13893471 ~ 13903111 (+)
si:ch73-364h19.1 LOC108258115 coding upstream 56038 13877160 ~ 13889327 (+)
dhps dhps,LOC107563249,LOC107661880 coding upstream 211149 13721234 ~ 13734216 (+)
fbxw9 fbxw9 coding upstream 231481 13702684 ~ 13713884 (+)
nfixb nfix,nfixb,LOC107553634,LOC107661654,LOC107715650,LOC106601192,LOC107718575 coding upstream 285126 13517596 ~ 13660239 (+)
nptx1l nptx1l,LOC108274797,LOC108435874,LOC107569544,LOC107665615,LOC107684232 coding downstream 157602 14117953 ~ 14122314 (+)
LOC113528345 mgat5b,LOC108274344,LOC108435872,LOC107743022,LOC107562046 coding downstream 269471 14229822 ~ 14311551 (+)
rasd4 zgc:153845,LOC108435855,LOC103035404,LOC106601411,LOC106606999 coding downstream 414744 14375095 ~ 14376449 (+)
LOC113527900 LOC108275579 coding downstream 472373 14432724 ~ 14442332 (+)
im:6904045 NA coding downstream 483283 14443634 ~ 14447163 (+)
LOC113528277 NA non-coding upstream 17376 13922873 ~ 13927989 (+)
G210792 NA non-coding upstream 74273 13870370 ~ 13871092 (+)
G210789 xylt2 non-coding upstream 82486 13862372 ~ 13862879 (+)
G210782 NA non-coding upstream 84135 13861008 ~ 13861230 (+)
G210779 xylt2,LOC107665700,LOC107548721 non-coding upstream 89570 13855143 ~ 13855795 (+)
G210784 NA non-coding downstream 27524 13987875 ~ 13989893 (+)
G211006 NA non-coding downstream 418192 14378543 ~ 14379897 (+)
G211031 NA non-coding downstream 472019 14432370 ~ 14433295 (+)
G211032 NA non-coding downstream 473476 14433827 ~ 14434055 (+)
G211058 NA non-coding downstream 506087 14466438 ~ 14466674 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 451423 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 499679 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 1570993 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 1755295 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 1804994 12135269 ~ 12140371 (+)
socs3a socs3 other downstream 658853 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 1027735 14988086 ~ 14991450 (+)
G211913 NA other downstream 1957866 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 2179979 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 3126933 17087284 ~ 17113156 (+)

Expression


Co-expression Network