slc16a5b (LOC108274816)


Basic Information

Item Value
gene id slc16a5b
gene name LOC108274816
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11520766 ~ 11529442 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917058.2
gtgtgtgtgtgtgtgtgtgtgtgtatgtgcgtgtgtgcgcgcgcgcgtgggTTCAGTGTTGGAGTTCCCTGGTCCAGCACAGGGGGTTACGCAAGGCCACAAAGGAAGGAGACTTCAGGGCCACTTCATGTCAAGCGCATATGTCATCTTCCTGCTAAGGTGACAGTGCTGATGTTGTTGGAGAAAGGCAGCGGGAGAGAGTGAAGTTACCGATTATGCGCCATATTTTGACCACAAGCAGCTGGAAGAGAAGCCCCTCTGGCAAGCAGAAtgacagaaggtgttgatgttCCACAGACCCCGAGGACCACACTAAGCAATGGCTCCATCACCCACCAGGCAAGAGCCAGTGCTGATGCTAGCCAAAGCCCTGAGTCATGGAGCAGGACTTCCTCTTTACATCTTTCAGATACGGGGCCAGGGCAGGGCGAGGAACACAGCTGTGAGCCTGAGGATCAGGATGATCAGGAAGTAGAGTCCTCCAGCCTCCATGAGGGGCTGCAGTGCCACACAGGAGTAGCAGGAGAGCGACACAGTGGACATTTGGCACCTGATGGAGGCTGGGGCTGGGCTGTACTGACAGCTACTATCCTGGTCTTGGCACTCACACTCGCCTTCCCCTCCTGCATTGGCATCTTTTACACAGATTTGCAAAAAGAGTTCGAAGCAAGCAACTCTGAAACATCCTGGGTGCCAGCCATCATGACAGCAGTACTACATGCAGGAGGCCCAATATGCAGCATTCTCGTGGAGTGCTTCGGTTGTCGTGCAACAATAATGGTGGGTGGGATCCTGAGTGGAATTGGGATGGTAGTCAGCTCTTTTGCTCAGACCATGGCTGACCTGTACTTCGCCACCGGAGTCATCACAGGAATGGGATTCTGCTTGTGCTTCCAGCCATCAGTCACCATGGTGGGCCATTACTTTGTTCGCCGCCGTGCCTTTGCCAGTGCCCTCTCTTCCACAGGAACAGCGCTGGGTCTAAGCACTCTGCCTTTGCTGGCCAACTTTCTGCTGGGGCAGTTTGGCTGGCGAGGCAGCTTCCTGGTGCTCGGTGGAGTCGTGCtcaactgctgtgtgtgtggggctgtcATGAGGCCTCTGGGGGCCAAAATGAAAGTGAAGGCAATGCCAATACAGTCAGTAAATCCGGTGCTTAAAACCAATGGTCTTCTTGCAGAGCAGGAGCAAAAGGGGCTGAAGGGGCGTCTACAGAGCTCCCTGTCAACCCTAGTGCCCTTCCTGTGTAGGCATATGGCTGTTGACCTGATACGCACCCACCCACGCTTCCTTGCCTATGCCTTGGGTGTGTCATGGATGATGTTGGGCTTTTTAGTGCCACTGGTCTACCTGGTGCCGTATGCCACTTCACATGGGATAGAGCAGGAGCGTGCTGCTCTGCTTATGGCTGTCCTTGGTCTGGTCAATGTGACAGTAAGACCGACGGCGGCACTACTTTTCGGACTTAAGCGCTTCCGTGGAAGCCGCCACTTTGTCTATGTGTTCGCCTGTGCCCTCTTGGTCAATGGCCTgagcaactgtgtgtgtggtgcagtgaCCAGTTTCCGTGCACTCCTAGCCTGTGTGCTGGTGTTCGCTACTTCCATGAGTATCGTGGGCTCTCTGCTCTACACTGTGTTGATGGAGACAGTGGAGATGAGTCGTTTTCAGTCGGCCCTGGGCCTCATCAGCATCATGGAAAGCGTCATGCTTCTTCTGGGCCCACCTCTAGCAGGAATGTTGGCAGATTTTACTGGGCAGTACAGCTACGCGTTCTTCTTCTGCAGTGTGTCTGTTTCCACCGCTGGCCTCTTTATTATGGTATCTTTCTACTGGCTGGATAGACAGAGtaaaaaggaagagaagaggcCTTTCTCTGAACACACCCACAATTTGAAGCCCAGTATCAGTCCGGCTGCTGATGTTGGAGGCAAACAAGTGCCTTTACAGAGGAGGAGAGTCCAAGACACTGATACTGCCACTAATGTTTAAATGCTACAgtgtaaaatgcatttctgcATACTACCACTAGTATTTCAGACCATACAAGAATGTACAcagattttctcattttttagtCATGGATACTGGGTTTCATTTCCCAGTCAAGTAGCTCAGTGGTGAAGGTTTATATTTGCACATAATGGTATTGACATATTGActgtctaattaaaaaaattgaattgaatttaatttataaaggtTTTCTATGTTCTACCAAACAACAATGGCAACCGAGTGAATGTTGTTCTCTTGCTATagataattttgtatttttgaaaatatgtacaaaatcaTTTCACTTAGATATTATGGAAGAAATGTTTCTATCTGAATAGCCTAGCTGCCTAAGGTCAGTCGTGATATGGTTGTAGGTCATGCCCAGTGAAGGATGTTTACTCTGCTAATATATGGGcataattatagaattattgaCACTGTGAAAAACCATGATAGCCTTGTTCAAActaatttttaattatgaatttatttcagttgttttaattttaaaaacttaaagccttaaacatatttatatatgtgatcttttattcaaataaagaGATATATTTCAA

Function

NR:

description
PREDICTED: monocarboxylate transporter 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917058.2 True 2576 mRNA 0.48 5 11520766 11529442

Neighbor

gene id symbol gene type direction distance location
LOC113528402 LOC108258929 coding downstream 2679 11509731 ~ 11518087 (-)
LOC113528102 rnf222 coding downstream 25279 11493275 ~ 11495487 (-)
hs3st3b1a si:ch211-216b21.2,hs3st3a1,LOC108260710,LOC107704231,LOC107684140,LOC107753271 coding downstream 82431 11426285 ~ 11438335 (-)
LOC113528663 NA coding downstream 88138 11432510 ~ 11432628 (-)
ttyh2l LOC108277373,LOC108432236 coding downstream 329251 11154915 ~ 11191515 (-)
LOC113528647 NA coding upstream 7118 11536560 ~ 11536678 (-)
LOC113528658 NA coding upstream 36568 11566010 ~ 11566128 (-)
spc24 spc24 coding upstream 216049 11745491 ~ 11751424 (-)
kri1 kri1 coding upstream 223601 11753043 ~ 11763823 (-)
LOC113528652 NA coding upstream 226383 11755825 ~ 11755923 (-)
G209541 LOC108256081 non-coding downstream 43970 11403078 ~ 11476796 (-)
G209538 NA non-coding downstream 119343 11400722 ~ 11401423 (-)
G209529 NA non-coding downstream 131535 11388960 ~ 11389231 (-)
LOC113528410 NA non-coding downstream 299388 11218659 ~ 11221378 (-)
G209189 NA non-coding downstream 375782 11089013 ~ 11144984 (-)
G209553 atp5h,LOC103042933,LOC101487002,LOC107599347 non-coding upstream 2134 11531576 ~ 11535697 (-)
G209618 NA non-coding upstream 71030 11600472 ~ 11601244 (-)
G209624 NA non-coding upstream 81192 11610634 ~ 11617188 (-)
LOC113527962 NA non-coding upstream 90098 11619540 ~ 11626068 (-)
G209646 hmgxb4 non-coding upstream 135043 11664485 ~ 11665129 (-)
tecpr1b LOC108276900 other downstream 1050248 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 1788200 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2046288 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 2101182 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 2317126 9196496 ~ 9203640 (-)
hmox1a hmox1,LOC108432221 other upstream 112715 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 170407 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 768334 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 804412 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 1016891 12546333 ~ 12559213 (-)

Expression


Co-expression Network