hid1a (hid1,LOC107710705,LOC107698779)


Basic Information

Item Value
gene id hid1a
gene name hid1,LOC107710705,LOC107698779
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14878966 ~ 14899732 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917065.2
AACAGGCTCGCGCGCTTGGAAGCCGGAAGTAGGCGCTTGCTCTCTGCCAGTGACACAGGCGCAGGAGGAGGGAGCGACACTAGCCTCTCCGCCGCAGCGGCGCTGTCTTCTACTCCCGAGAAATTATCAAAAAAAGCAGAATGGGAAATACGGATTCGAAGCTGAAATTTCGTAAAGCGGTAATACAGCTGACCACGAAGACTCAGCCAGTGGAAGCCACAGATGATGCATTCTGGGACCAGTTTTGGGCTGACACTGCCACCTCAGTCCAGGATGTATTTGCCCTTGTGCCAGCCGCGGAGATCCGAGCAGTGAGAGAGGAATCGCcctccaatctggcaaccctgtgtTATAAGGCAGTGGAGAAGCTGGTGCAGGCAGCAGAATCAGGATGCCCcagcgagagagagaagcaggttGTGCTGAACTGCACACGCATTCTTAGCCGCATCCTGCCTTACATTTTTGAAGACCAGGACTGGAGGGGCTTCTTTTGGTCCACCGTGCCCGGGGCCGGACGAGCTGGCCAGATGGATGAGAtggacgacgatgatgatggaGCGCGGCCACTGGCAGAGTCTCTGCTTCTGGCCATCTCCGACCTGCTCTTCTGTCCCGAGTTCACCGTGCAGAGCCATAAGAGAGGAGGACCTGATTCACTGGAGGATATGCAGTCACTGGACAGCTGCGAGTACATCTGGGAGGCAGGGGTGGGCTTTGCACAGTCGCCACCACTCAACTACATCCATGATATGAACAGGACTGAGCTGTTGAGGCTGCTGCTGACCTGTTTCTCTGAGGCCATGTACTTGCCTCCATCTTCAGATGGCAACATCATCAATCCCTGGGTCACTTTCTTTTGCTCTACTGAGAATAGGCACGCCCTGCCTCTGTTTACCTCCCTGATTAACGTGGTGTGTGCGTATGACCCGGTGGGCTACGGCATTCCCTACAACCACCTGCTGTTCTCAGACTACAGGGAGCAGCTGGTGGAGCAGGCAGTGCAGATCCTCATCGTCACTCTGGAGCACGAGAATGCTCAGCCTCAGCGCGCTCCCTCCCCCTCCAGCATGGACGAGCAGGATTCTGTAGGCCCACAAAACCTGTTTGTGAACTATCTGTCCAGAATTCACAGGGAGGAGGATTATGACTTTGTGCTGAAAGGCCTGGCTCGCCTGCTCACTAACCCGCTCACTCAGACCTACCTGCCCAACTCCACCAAGAAGATCCAGTTCCACCAAGAGCTTCTGGTCCTCTTCTGGAAATTTTGCGATTTCAACAAGAAATTCTTGTTCTTTGTTCTGAAGAGCAGTGATGTTCTGGATATCCTGGTGCCTATTCTCTACTACCTGAATGATGCCAGGGCTGACCAGTCCCGTGTTGGTCTCATGCACATCGGTGTGTTcattttgctgctgctgagtgGCGAGAGGAATTTCGGAGTGCGTCTGAACAAACCATACTCTCTTCGCGTCCCGATGGATATTCCAGTCTTCACTGGCACACATGCCGACCTCCTCATTGTAGTTTTCCACAAGATCATCACCAGTGGCCATCAGCGTCTGCAGCCACTCTTCGACTGCCTGCTCACCATTATAGTGAATGTGTCTCCTTACCTGAAGAGTCTGTCCATGGTGGCAGCCAATAAGCTCCTGCACCTTCTGGAAGCTTTCTCCACCAACTGGTTCCTGTTCTCTGCTGCTCAGAACCACCACTTGGTCTTCTTTTTGCTGGAGGCCTTTAATAACATCATCCAGTACCAGTTTGATGGCAACTGCAACTTGGTATACGCCATCATCCGCAAGCGTAACGTCTTTCACCAGCTTGCCAACCTGCCCACTGACTCTGCATCCATCCAGAAGGCACTGCAAAAGAAGAGGAAATCTCCCGATGCCATCTCTCGCACCAACTCCCAGGAGACCGTTTCCATGGAGGGCTCTAGGCCAGCTGTACCTGCCGAGCCGGGCACGCTGAAGGCCAGCCTTGTGGCCATGCCAGgTATTGATAAACTAACAGAGAAGTCCCAAGTATCGGAGGATGGTACCATGGTCACAGTGCCAAAGACAGAAACTCCTCACTCACCGGAACATGGTGTCTTGAGTGGGGCCAGTGACACAGAGTCCAACTCTGGAAGAGACAACGAGGACGTCTTCTACACAGAGGCAGAAATGGCGAGGAGACGTCTGTCAAGTGCATCATCGGCCGCCACATACTGGGTCCCAACACCAGAGTGGGTCCTGTCCTGGAAGAGCAAGCTCCCTCTACAAACCATCATGCGCCTGCTGCAGGTCCTGGTGCCCCAAGTGGAGAAGATCTGCATTGACAAgGGCTTGACAGACGAATCAGAGATCCTGAAATTCCTCCAGCACGGTACCCTGGTGGGGCTTTTGCCTGTGCCTCACCCTATTCTGATCAGAAAATACCAGGCCAACGCAGGCACTGCCATGTGGTTCCGCACATACATGTGGGGCGTCATCTATCTCCGCAACGTGGACCCACCAATCTGGTACGACACAGACGTTCGTCTCTTCGAGATCCAGAGAATGTAGAAGGGTGGATCCATGAGCTGCCTGTCACTGACTAAATAGAGGGCTGGTTGGTGACTTCCGTCTCCACTCCTCTCACTCCAACACCCATTTAAAGCTTAGTCTTCAGTTTCAGCGCAGTGCTGTAGCCCTTCTCGTAGGTCTAACAGGTTTATTCCAGTCAAATGGAAAAAGACGCTTTTGTCTAAACCTAAAGGATTCAGTGACTCGGAAAGTCTGTAAGAGTGTTCATGGCTCACTGAGTTGGCATGTGTGGACGCTCGGAATGGCTGGTGTACAAATGATAACGTTTCTACATATAGCTCTGCCTTTTGATAAGACCGTATAATGTCCAGCAGCTTAAACCATTGAGAATCTCTCACTGTGGATGTATGAATGTTTTTCCTACCGTATGAACTGCCGctgtatataaaaacatatatatatatatatatttgatggAAGCATATTTGAAAGTCTAATGAATTTGGTCGCATGTAGTCCAGTAGAGAGTGGCGTTAGTAGGCTAGTGTGACCATCAGCATTGAATGTGACTGTGTTGCCATACACATGCCACTAGAAGGCAGCATAACTACAGCTATCTGTTAAACACGTGCTTTCTTGTTCCGTAGGTCGTCTCATTAATCCTACTCGTGACGTATTCCTCTCACTCTCATTTTCAGGTTAACATTTCACGAAACACTATCAGACTGGCAAATATTTCAGGCAGTAACTATCCACATGTTTCACCAGTATTCAACTGTAAACAAATTATTTGCAATGTGCTGATGAGAATCATTTATGGTGACCTGATATTACTATTTTTGTCTGCATATCAGATTTGCTAATGAGATGATCTAATGTATATACTGTGCTCAATGTTTAAAGTAAAATTTTTGTCgcaatataaagaaaaacatataatgtaTGCTGAGCTCGAAAACAGGACGTCCTGTGAATCACTTTACATGGTTACATGGTCAGGCACACCAATTTGTCTTCACAATTTCCTTGTTTTAAACCTGGGAACAAACATTTGGTGCCTCTTTACAACATACTAATAAGGAGAGTGATAGACAGAAAAAGGAAGTGACCAGTGATTAAGGTGGTTTTGTAATCATTTGAATGTTGTGTCATCTGGTATGGGAAAAACCAGGGATGGGAACTGCATTGGGAATGTTAAGATTGGTGTGGctgtgtgtaatataatataaacacagGAAGTGGTTGTTCATCAATTTCtttaatttgatttcatttttaatttaacagcaTGACATCCCCTCAGATATTGCATTTACTCACGGTAGGGACAGGAAACATAAAACAGGCTATAGTGAGTGTTATctgtttgcttattttttttttttttctttcattccacTCTGCATGAAGACTTCAATAGAAATTATAATTAAGACCCACGCAAGGTTATTTGGTTTTATTGTGTTAGTAAAGTGCAATTTTCATATTGGAAGTACAAATATTTGTACCTCCCATTGTGTATAATGCATAAAGTTTTTATATCAGATATTTCAAGCTATACATAATCAGGACATCCAGACAGGTGATacaggggtaaaaaaaaaaaaaaaaa
>XM_026917066.2
AACAGGCTCGCGCGCTTGGAAGCCGGAAGTAGGCGCTTGCTCTCTGCCAGTGACACAGGCGCAGGAGGAGGGAGCGACACTAGCCTCTCCGCCGCAGCGGCGCTGTCTTCTACTCCCGAGAAATTATCAAAAAAAGCAGAATGGGAAATACGGATTCGAAGCTGAAATTTCGTAAAGCGGTAATACAGCTGACCACGAAGACTCAGCCAGTGGAAGCCACAGATGATGCATTCTGGGACCAGTTTTGGGCTGACACTGCCACCTCAGTCCAGGATGTATTTGCCCTTGTGCCAGCCGCGGAGATCCGAGCAGTGAGAGAGGAATCGCcctccaatctggcaaccctgtgtTATAAGGCAGTGGAGAAGCTGGTGCAGGCAGCAGAATCAGGATGCCCcagcgagagagagaagcaggttGTGCTGAACTGCACACGCATTCTTAGCCGCATCCTGCCTTACATTTTTGAAGACCAGGACTGGAGGGGCTTCTTTTGGTCCACCGTGCCCGGGGCCGGACGAGCTGGCATGGATGAGAtggacgacgatgatgatggaGCGCGGCCACTGGCAGAGTCTCTGCTTCTGGCCATCTCCGACCTGCTCTTCTGTCCCGAGTTCACCGTGCAGAGCCATAAGAGAGGAGGACCTGATTCACTGGAGGATATGCAGTCACTGGACAGCTGCGAGTACATCTGGGAGGCAGGGGTGGGCTTTGCACAGTCGCCACCACTCAACTACATCCATGATATGAACAGGACTGAGCTGTTGAGGCTGCTGCTGACCTGTTTCTCTGAGGCCATGTACTTGCCTCCATCTTCAGATGGCAACATCATCAATCCCTGGGTCACTTTCTTTTGCTCTACTGAGAATAGGCACGCCCTGCCTCTGTTTACCTCCCTGATTAACGTGGTGTGTGCGTATGACCCGGTGGGCTACGGCATTCCCTACAACCACCTGCTGTTCTCAGACTACAGGGAGCAGCTGGTGGAGCAGGCAGTGCAGATCCTCATCGTCACTCTGGAGCACGAGAATGCTCAGCCTCAGCGCGCTCCCTCCCCCTCCAGCATGGACGAGCAGGATTCTGTAGGCCCACAAAACCTGTTTGTGAACTATCTGTCCAGAATTCACAGGGAGGAGGATTATGACTTTGTGCTGAAAGGCCTGGCTCGCCTGCTCACTAACCCGCTCACTCAGACCTACCTGCCCAACTCCACCAAGAAGATCCAGTTCCACCAAGAGCTTCTGGTCCTCTTCTGGAAATTTTGCGATTTCAACAAGAAATTCTTGTTCTTTGTTCTGAAGAGCAGTGATGTTCTGGATATCCTGGTGCCTATTCTCTACTACCTGAATGATGCCAGGGCTGACCAGTCCCGTGTTGGTCTCATGCACATCGGTGTGTTcattttgctgctgctgagtgGCGAGAGGAATTTCGGAGTGCGTCTGAACAAACCATACTCTCTTCGCGTCCCGATGGATATTCCAGTCTTCACTGGCACACATGCCGACCTCCTCATTGTAGTTTTCCACAAGATCATCACCAGTGGCCATCAGCGTCTGCAGCCACTCTTCGACTGCCTGCTCACCATTATAGTGAATGTGTCTCCTTACCTGAAGAGTCTGTCCATGGTGGCAGCCAATAAGCTCCTGCACCTTCTGGAAGCTTTCTCCACCAACTGGTTCCTGTTCTCTGCTGCTCAGAACCACCACTTGGTCTTCTTTTTGCTGGAGGCCTTTAATAACATCATCCAGTACCAGTTTGATGGCAACTGCAACTTGGTATACGCCATCATCCGCAAGCGTAACGTCTTTCACCAGCTTGCCAACCTGCCCACTGACTCTGCATCCATCCAGAAGGCACTGCAAAAGAAGAGGAAATCTCCCGATGCCATCTCTCGCACCAACTCCCAGGAGACCGTTTCCATGGAGGGCTCTAGGCCAGCTGTACCTGCCGAGCCGGGCACGCTGAAGGCCAGCCTTGTGGCCATGCCAGgTATTGATAAACTAACAGAGAAGTCCCAAGTATCGGAGGATGGTACCATGGTCACAGTGCCAAAGACAGAAACTCCTCACTCACCGGAACATGGTGTCTTGAGTGGGGCCAGTGACACAGAGTCCAACTCTGGAAGAGACAACGAGGACGTCTTCTACACAGAGGCAGAAATGGCGAGGAGACGTCTGTCAAGTGCATCATCGGCCGCCACATACTGGGTCCCAACACCAGAGTGGGTCCTGTCCTGGAAGAGCAAGCTCCCTCTACAAACCATCATGCGCCTGCTGCAGGTCCTGGTGCCCCAAGTGGAGAAGATCTGCATTGACAAgGGCTTGACAGACGAATCAGAGATCCTGAAATTCCTCCAGCACGGTACCCTGGTGGGGCTTTTGCCTGTGCCTCACCCTATTCTGATCAGAAAATACCAGGCCAACGCAGGCACTGCCATGTGGTTCCGCACATACATGTGGGGCGTCATCTATCTCCGCAACGTGGACCCACCAATCTGGTACGACACAGACGTTCGTCTCTTCGAGATCCAGAGAATGTAGAAGGGTGGATCCATGAGCTGCCTGTCACTGACTAAATAGAGGGCTGGTTGGTGACTTCCGTCTCCACTCCTCTCACTCCAACACCCATTTAAAGCTTAGTCTTCAGTTTCAGCGCAGTGCTGTAGCCCTTCTCGTAGGTCTAACAGGTTTATTCCAGTCAAATGGAAAAAGACGCTTTTGTCTAAACCTAAAGGATTCAGTGACTCGGAAAGTCTGTAAGAGTGTTCATGGCTCACTGAGTTGGCATGTGTGGACGCTCGGAATGGCTGGTGTACAAATGATAACGTTTCTACATATAGCTCTGCCTTTTGATAAGACCGTATAATGTCCAGCAGCTTAAACCATTGAGAATCTCTCACTGTGGATGTATGAATGTTTTTCCTACCGTATGAACTGCCGctgtatataaaaacatatatatatatatatatttgatggAAGCATATTTGAAAGTCTAATGAATTTGGTCGCATGTAGTCCAGTAGAGAGTGGCGTTAGTAGGCTAGTGTGACCATCAGCATTGAATGTGACTGTGTTGCCATACACATGCCACTAGAAGGCAGCATAACTACAGCTATCTGTTAAACACGTGCTTTCTTGTTCCGTAGGTCGTCTCATTAATCCTACTCGTGACGTATTCCTCTCACTCTCATTTTCAGGTTAACATTTCACGAAACACTATCAGACTGGCAAATATTTCAGGCAGTAACTATCCACATGTTTCACCAGTATTCAACTGTAAACAAATTATTTGCAATGTGCTGATGAGAATCATTTATGGTGACCTGATATTACTATTTTTGTCTGCATATCAGATTTGCTAATGAGATGATCTAATGTATATACTGTGCTCAATGTTTAAAGTAAAATTTTTGTCgcaatataaagaaaaacatataatgtaTGCTGAGCTCGAAAACAGGACGTCCTGTGAATCACTTTACATGGTTACATGGTCAGGCACACCAATTTGTCTTCACAATTTCCTTGTTTTAAACCTGGGAACAAACATTTGGTGCCTCTTTACAACATACTAATAAGGAGAGTGATAGACAGAAAAAGGAAGTGACCAGTGATTAAGGTGGTTTTGTAATCATTTGAATGTTGTGTCATCTGGTATGGGAAAAACCAGGGATGGGAACTGCATTGGGAATGTTAAGATTGGTGTGGctgtgtgtaatataatataaacacagGAAGTGGTTGTTCATCAATTTCtttaatttgatttcatttttaatttaacagcaTGACATCCCCTCAGATATTGCATTTACTCACGGTAGGGACAGGAAACATAAAACAGGCTATAGTGAGTGTTATctgtttgcttattttttttttttttctttcattccacTCTGCATGAAGACTTCAATAGAAATTATAATTAAGACCCACGCAAGGTTATTTGGTTTTATTGTGTTAGTAAAGTGCAATTTTCATATTGGAAGTACAAATATTTGTACCTCCCATTGTGTATAATGCATAAAGTTTTTATATCAGATATTTCAAGCTATACATAATCAGGACATCCAGACAGGTGATacaggggtaaaaaaaaaaaaaaaaa

Function

symbol description
hid1 Located in Golgi cisterna; cytoplasmic microtubule; and cytosol. Is extrinsic component of Golgi membrane.

NR:

description
protein HID1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917065.2 True 4122 mRNA 0.47 19 14878966 14899732
XM_026917066.2 False 4119 mRNA 0.47 19 14878966 14899732

Neighbor

gene id symbol gene type direction distance location
cyth1a cyth1,cyth1a,LOC106920077,LOC108277039,LOC107552117,LOC103392816,LOC104925066 coding upstream 277959 14534573 ~ 14601007 (+)
usp36 usp36,LOC107717487,LOC104948677 coding upstream 351437 14501308 ~ 14527529 (+)
timp2b LOC108277022 coding upstream 379397 14491388 ~ 14499569 (+)
LOC113527904 lgals3bp coding upstream 400000 14476246 ~ 14478966 (+)
LOC113528183 LOC108275544 coding upstream 415484 14461356 ~ 14463482 (+)
ush1ga ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596,LOC107664446 coding downstream 12457 14912189 ~ 14920677 (+)
LOC113528525 LOC108260868 coding downstream 27821 14927553 ~ 14932006 (+)
zgc:112148 tvp23b,LOC105899270,LOC108437154 coding downstream 35505 14935237 ~ 14941094 (+)
stk19 stk19 coding downstream 74844 14974576 ~ 14979006 (+)
cyth3b cyth3,LOC108258062,LOC108437157,LOC107556600,LOC101486233,LOC103143117,LOC107664323,LOC107571178 coding downstream 101138 15000870 ~ 15037047 (+)
G211247 NA non-coding upstream 34404 14844422 ~ 14844562 (+)
LOC113527943 NA non-coding upstream 34594 14838290 ~ 14844372 (+)
G211208 NA non-coding upstream 164091 14714671 ~ 14714875 (+)
G211117 NA non-coding upstream 186207 14604717 ~ 14692759 (+)
LOC113528421 NA non-coding upstream 234723 14643716 ~ 14644243 (+)
G211287 NA non-coding downstream 44 14899776 ~ 14900306 (+)
G211338 NA non-coding downstream 110410 15010142 ~ 15010651 (+)
LOC117598819 NA non-coding downstream 303790 15203522 ~ 15204658 (+)
G211540 NA non-coding downstream 569817 15469549 ~ 15471704 (+)
G211543 NA non-coding downstream 586805 15486537 ~ 15488982 (+)
socs3a socs3 other upstream 257178 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 1385024 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 1433280 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 2504594 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 2688896 12158703 ~ 12190070 (+)
LOC117598752 NA other downstream 88354 14988086 ~ 14991450 (+)
G211913 NA other downstream 1018485 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 1240598 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 2187552 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 2798941 17698673 ~ 17733006 (+)

Expression


Co-expression Network