mpv17l (LOC108256073)


Basic Information

Item Value
gene id mpv17l
gene name LOC108256073
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3470453 ~ 3477325 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917067.2
CAAGTGAGCAGGTGAGTGGCTCTTTAACCCATGTTTATGATGCACACAGTTTTAATCCAGCCTGGCAACCACAGCAGGATGACAGGAGGTTATCCTCGGTTTCAGACACACCCACACGGGCTTCATTAAGTCGCTCACTCACGCGCTTGACTTGTTCAGCAGAGGTCAAATCCTGCCACACTTACCCAGCTCGCGCGAATAaaactctaactctaactctaatTTTAAGAAGATGAGGAAGGTGTTTCCGTGGCTGACCAACGTGTCTCTGTACGGCTGTCTGTTCGCCGGCGGGGATCTGCTCCATCAGCGCGTGACGCACAGGCACGGCGGCGAGCTGGACTGGAAGCGCACCAGGAACGTGGCGCTCGTGGCGTtctgtttccatggcaactgGAACTACTTTTGGCTGCGCGCGCTGGAGCGCCGGTTCCCGGGAAGGTCCCTGGGCATGGTGCTCACCAAGTTAGCTCTGGATCAGAGCTTCTCCTCGCCCTTAGCCACCAGCGTCTTCTACACAGgagTGAGTGTGTTGGAGGGCAAAGAGGATGTATTTGAGGACTGGAGGGAAAAATTCTTCAACACATATAAGACAGGACTCATGTACTGGCCCTTCATGCagTTCCTGAACTTTGTGTTGATGCCGCTGTACCTGCGCACCGTGTTCATGGGCTGCTCGGCGTTCCTGTGGGCCGCGTTCTTGTGTTTCTCGCAGCAGAGTGGCGACGGCACCATGGCCACGGCTCTCGACTGGTTTACCACCTCCGAGAAACGGATCATGAGCCGCAGCACTAATGAGGAGAAGTGATGAACGTGAAGGCACACAGGAACAGCGACCCTGGTGCCTTCTCTCACACTACAGAGGTGTACAGACACGCTGCACAagcccttatttatttatatgcgTGTAATGTCATGTGTTGTGTTACTTGAAATATTTTTCCACTCAATCCGGATACCTCGTATGTCCAAGtatgtgctgataatcagttaaatgatacacacacaatattgtgAGATCAGCACTACATTTTCGTGCCTTTCACAAGGCTAATTATTTATGTACTGCACTAAATAGCATTCATATTGTTGTTTTTCAATCTCTAGATATTGTTCTCATgttgtttagctagctagcataacaCGACCTCACATGAAGCACAATCAGCTCTCTGCTAAgcactgtggttttttttttgcgattgttatattattattttattttatactgcagcactg

Function

NR:

description
PREDICTED: mpv17-like protein

GO: NA

KEGG:

id description
K13349 MPV17L; Mpv17-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917067.2 True 1239 mRNA 0.49 4 3470453 3477325

Neighbor

gene id symbol gene type direction distance location
LOC113528556 LOC108277488,LOC108437999,LOC107721491,LOC107720004,LOC107590377,LOC107688123,LOC107601225,LOC107654455 coding upstream 117601 3317323 ~ 3352852 (+)
LOC117598751 tlr-5,LOC108275971,LOC108275978 coding upstream 172857 3290562 ~ 3297596 (+)
LOC117598988 tlr-5,LOC108275978,LOC108275971 coding upstream 181012 3276048 ~ 3289441 (+)
mylpfa mylpf,mylpfa,LOC107582990,LOC108249004,LOC108443170 coding upstream 228466 3236039 ~ 3241987 (+)
zgc:153733 LOC108275998 coding upstream 239239 3221273 ~ 3231214 (+)
si:dkeyp-72e1.6 LOC108274424 coding downstream 2913 3480238 ~ 3483748 (+)
rrn3 rrn3,LOC104947155 coding downstream 8419 3485744 ~ 3500428 (+)
ppl ppl,LOC107720077 coding downstream 63785 3541110 ~ 3560678 (+)
dus1l dus1l,LOC107590391,LOC107654489,LOC107688109,LOC107601270 coding downstream 153114 3630439 ~ 3639871 (+)
zgc:86896 LOC108259475,LOC108436955,LOC107590453,LOC105899990,LOC107719989,LOC107601274,LOC107654493 coding downstream 208153 3685478 ~ 3692367 (+)
G204679 NA non-coding upstream 67106 3399769 ~ 3403347 (+)
G204678 NA non-coding upstream 113547 3353298 ~ 3356906 (+)
G204633 cd2bp2,LOC107582988,LOC107729467 non-coding upstream 251569 3215787 ~ 3218884 (+)
G204417 NA non-coding upstream 397727 3064905 ~ 3072726 (+)
G204410 NA non-coding upstream 434290 3034271 ~ 3036163 (+)
G204771 NA non-coding downstream 110577 3587902 ~ 3590031 (+)
G204790 NA non-coding downstream 168438 3645763 ~ 3646675 (+)
G204774 NA non-coding downstream 170864 3648189 ~ 3649538 (+)
G204773 NA non-coding downstream 195659 3672984 ~ 3715580 (+)
G204815 NA non-coding downstream 299279 3776604 ~ 3786578 (+)
LOC113527909 NA other upstream 270320 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 457594 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 562410 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 1284289 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 1482538 1917205 ~ 1987915 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 56964 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 489408 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 493854 3971179 ~ 3971250 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 1142893 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 1215152 4692477 ~ 4711316 (+)

Expression


Co-expression Network