otop1 (otop1)


Basic Information

Item Value
gene id otop1
gene name otop1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 19953573 ~ 19961168 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917068.2
AATTAGTGCTGTTGGATTGCAGAGCAAAATGGTGGAGCACAGCGGGCCCGATGTGAAGTTTGTGAACAAGTACTGTCCCAGTTCGTCCTCTTCGtcttccacctcctcctccacttcttcctcctcttcctctgcgCGCGAGATGAAGGTTTTGGCCACGCTGCGCGGCAGCCTGAGCCGGAAGTACCCGCAGAAGAACGGCGAGGTGCTGAGCGCGCAGTACGGCATCAACCTGTTGCTCGTGGGCCTCGCGCTCATGCTGGCGCTCGCGTACCAGGGACCGACCGTGACCGAGGAGACGGTGCTGGCTTTCCTCTCCACGCTCATGCTCATGCAGCTGCTGTGGATGATCTGCTACGTGGCGCGACTGGAGCGCAAGCGCGATGCGCCGCCGGAGAGAGACGCGAACGCCGCCACCAGCTGGATCAGAGGTGGTCTGACTCTGCTCGCTCTGCTCTCACTCATCACAGATGCCTTCCGTGTCGGGAACTTTGTCGGTtatcaggagtgtgtgtctccGGTGCTTGGCGTCTACCCGGTTGTACACGCACTTCACACAGTGTCgcagGTTCATTTTCTCTGGTTTCACGTTAAAGATGTCATCAAGCGTTATGAAACGTTTGAGAGGTTTGGCGTGATTCATGCTGTATTCACTAACCTGCTGGTTTGGAGTAATGGAGTGATGACTGAAGCCGAACATGCTCTCAATGACCACAAGAGACGATTATCAGCAGTCGGATACTTCAACTTTACTGTCGGGGagGCCACTCAGCCTGACTGTAACTGTACAACCAGTGCGTGTTCGATGTTCAGCAGCAGTCTGTACTATCTCTGTCCTTTCAACATCGAGTACCACATCTTAGTCTCTGTGCTGCTCTTCgtcatgtggaaaaatgttGGCCGCACTCTCGACCAACGCACCAATCAGAAGCCTGCATCATCTTCACCATTGCTAAAAAGCTCAGGAGACGGACCTTTCCTGCTGCTCGGCCCGGCCCTCGGGCTCTTGGCACTTGCCAGTGCCATCACGGTGCTCGTTATCTACATCATCCACGTGGAGGAGTCACTGGAGGCACGCCATGCAGCCATCTCCATGTTCTACTGGTTTGGAATCGTCATTTTGGCATGCATGAGTGTCGCCGGTGCTGTCGGATTGGTCATCTATCGCCTCGAGGATTGGCCCATGGACACTGCGCCAAATCCAGCCAGGACACTCGATTCTAAGCTGCTGCTCGGCTCTTCCATTGGCTCCTGGCTTGTCTGCTGGTGCAGTGTCATCGCAGTGGGTGGGGCCACAAATTCACCCATCTACCGATGGGCCAATTTAGGATACGCCATACTTTTAGTTTTGGAGAAGTGCGTGCAAAATCTGTTCGTTGTCGAGTCGCTTTACAGGAGACGACGTGAGCCTGAAGAGCGGCCCGCCCTTTGCGCCAACCATAACTCCATCCTAAGCCCAAGTCAAGGAAATGAGAAAATCTTTGCCGTGTATGATGGTATCATTAACCATGCGTACGAGTCACCAGATAAACACTGTGAGAACGAAAAGCAAACTTACGGCAGGAACAACGGGAATGTTTCGCATTCTCGTGGACAAGGAATTTCAGAGACTCCCAACAGAAAGCGACAGGTCCTGAAAAATATCGCCATCTTCCTGTTCATGTGCAACATTTCGCTCTGGATCCTGCCTGCATTTGGATGCCGGCCACAGTTTGATAACGGTTTGGAGGAAGCATCATTCGGATTCCCCATCTGGAGCACGGTGCTGAATTTCGCCCTTCCCATGAGCCTCTTCTACCGCATGCACTCTGTTGCCGTTCTCTTCGAAGTTTTCCGGAAAATTTAGGCCCCACTTCCGTACCTGTGTGGTGTTTCTTTTGCACGCAGTAATGATGATTCCCTCCATTGAGTTCTCTGAACCAGGGTTACcttctttttaacattttttgtttcctcaaaaaaggagaaaaaatgcCTTTATCTCTTTCATTTTGATTGCACAAAAGAAAGAGCGATTGGAGTTTATTGCTACAAGACAGAAATAAGTTGTCTTTTGCCTTTCCTCCTCTGTGATTAGACAAAAGCAAGAGATTTCAGCCACTAGGGGTTGCAAGAGATTTCTCTCCACTAGAGGTTGCACAACTCTTCATTTTTACTAATCAACCAGGAATTCAAAAAAAACTAGTCGACTAGTCGTCTTTTCCCTAGTTAAAGCAGCAACTGATTCAGATCATCGCTACTTCATTAGTGAACTtaaatgctgattaaaaaaaaaatagccaagcACCATTAAACTGCACTTCATTTAACAGCCATGTACAGgctaaatattacatttatagctTCAATGTTTATTTAGGCTATGCTGTTAcctaaaaaagtaaacaaatcagtgcaataaatgtgccaaataataaatctgtgtatcatattacaatattttacaaCCGTTAGAGACTTCAACATAAAACACATAgaactagaggtgtgcatcgtGAATTCGTGACACGCGAGCAGGGGTCAGAAAAGAAGTTCGTGGAATATAGAAAAGACACGTTGATTGAGGTGTGTAGTCGTGGCGCGGTGCTTGTGCAGTGCTGAGCTATGTGTTAACCATGGCTGGTGTAAACTGGAGCAGAGTTGTGCATCGGGACTGGGATCCTACCAGACCCAGCTAAAAAAAGTCGCAGGAGTGGGCGGTTTCTACTTTCTTGCAAGTGGGAAGTGGGTGGACAGATATGAACCTTGTGAGACAAAGAAAGGGCTTcatccttcatcttcagtaactgctttatcctataaaataaaatatttatattttgacaAGTAGCCTAATAGAACCAACTTTTGTTTAGTTTGACAATAATATTTGCAGAAGTGGGCGGAATTGGTCAGCATTCCTTCGAGAACAGGCAGgaatggaatttttaaaaaaaacaagtcccACATACACCTCTAAACTGGGttttactcattcatttattcgtttaccttttacattatatttttggaaatatgaAGTTCGTTAGAAAATATCTAATGTGGGTacgtacaaataaaaataactgcaggATCGGGAGGGagtggtcagaattccttcgggAGTGGGCgggatttaaaaaacagtcctgcacaCTGCTCTACGTTTAACCATAAAAGTGAATTGAAAGTAATAA

Function

symbol description
otop1 Enables cholesterol binding activity; identical protein binding activity; and proton channel activity. Involved in proton transmembrane transport. Acts upstream of or within otolith formation and otolith mineralization. Is integral component of membrane. Is expressed in lateral line system; otic vesicle; vestibuloauditory system; and yolk syncytial layer. Orthologous to human OTOP1 (otopetrin 1).

NR:

description
PREDICTED: otopetrin-1

GO:

id name namespace
GO:0032475 otolith formation biological_process
GO:0045299 otolith mineralization biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917068.2 True 3176 mRNA 0.47 6 19953573 19961168

Neighbor

gene id symbol gene type direction distance location
LOC113528305 evc coding downstream 19853 19920704 ~ 19933720 (-)
cops6 cops6 coding downstream 35474 19913076 ~ 19918099 (-)
gpc2 gpc2 coding downstream 97370 19843001 ~ 19856203 (-)
LOC113528549 cytl1 coding downstream 128790 19816903 ~ 19824783 (-)
stx18 stx18 coding downstream 169178 19769988 ~ 19784395 (-)
tmem128 tmem128 coding upstream 6872 19968040 ~ 19974643 (-)
wdr1 wdr1,LOC107717326,LOC106565198 coding upstream 181709 20142877 ~ 20158387 (-)
LOC113527919 clnk coding upstream 216097 20177265 ~ 20195513 (-)
rab28 rab28,LOC102780097,LOC106600633,LOC107712918 coding upstream 381305 20342473 ~ 20374576 (-)
nkx3-2 nkx3-2 coding upstream 422589 20383757 ~ 20386625 (-)
G213879 NA non-coding downstream 289811 19663337 ~ 19663762 (-)
G213716 tnrc6a non-coding downstream 531158 19417184 ~ 19422415 (-)
G213549 NA non-coding downstream 880588 19023758 ~ 19072985 (-)
G213407 NA non-coding downstream 1104426 18792435 ~ 18849147 (-)
LOC117599003 NA non-coding downstream 1877186 18070785 ~ 18076387 (-)
G214159 NA non-coding upstream 59384 20020552 ~ 20056144 (-)
G214325 NA non-coding upstream 474884 20436052 ~ 20438834 (-)
G214331 NA non-coding upstream 484355 20445523 ~ 20445748 (-)
G214493 NA non-coding upstream 817597 20778765 ~ 20781702 (-)
G214526 NA non-coding upstream 880263 20841431 ~ 20841634 (-)
rbbp6 rbbp6 other downstream 505014 19429217 ~ 19448559 (-)
si:dkey-204f11.64 LOC108274053 other downstream 1125839 18823471 ~ 18827734 (-)
LOC117598999 NA other downstream 1576210 18375684 ~ 18377363 (-)
mettl23 mettl23 other downstream 1899357 18050735 ~ 18054216 (-)
tsen54 tsen54 other downstream 2080992 17811613 ~ 17872581 (-)
slc2a9l2 slc2a9 other upstream 78619 20039787 ~ 20138213 (-)
hs3st1 hs3st1 other upstream 244171 20205339 ~ 20213629 (-)
spry1 spry1 other upstream 938889 20900057 ~ 20905271 (-)
fgf2 fgf2,LOC107717315 other upstream 1053271 21014439 ~ 21028081 (-)
slc16a2 LOC108279893,LOC107596364 other upstream 1275634 21236802 ~ 21272507 (-)

Expression


Co-expression Network