tfap4 (tfap4,LOC107695712,LOC107601578,LOC107661646,LOC107553667)


Basic Information

Item Value
gene id tfap4
gene name tfap4,LOC107695712,LOC107601578,LOC107661646,LOC107553667
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17067237 ~ 17085755 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917074.2
TGTTCACTTCACTACTGTACAGCGTTGCAAGCGCGCTCGTGACAATTAAATGTATCCACTTGAAGCGgtttttgtcagattttattttttaaatacaatactCGACAAATATGTTTTCGCAGTTACCACACAGCTAATCTACTACGACATAACGATTGATTCTCTGAATTGTATGGTAAAATATTACTTATAACTCATCTGTAAGTAGCTGAAATGCGAAGCTGTCGTGTAGCTTAAATAATGATTTGTTTACAGTGGCTATTTTTGCCCGGCGGAACGCGGGGTTTTTGTAGTGCTGCGTGATTCCTACCAGCTGTTTCCCGCCTTGAAAGACACCCGATCAgctgcaaatacacacacatacacgtacatgcagaaggagggagggagacgGGGGAGGGAggttgagaaagagaaagagcgcCACACACTACGAGGGAACCCCATCAGCTGGAAGTAGAGTATCATTACAACTCTTCACGCTCCGCAGACGTTGCGTTCGTATGCAAACAACTGCAAATTCAATCGCACAGTCTGAATTGTTCTTATTAAATGCGCAATTGCTCGCGAATACACAGCAGAAAAGAGCGACGATTCATAATAAACGAAGTGTTAGGAAAAATCGCGGACTCAAAGCTGGAGAGGAAAGCATGGAGTATTTCATGGTACCAGCTCAGAAGGTGCCCTCCTTGCAACATTTTAGGAAAACGGAAAAAGAAGTCATAGGGGGCTTGTGTAGTTTAGCAAACATCCCCCTCACACCAGAAACGGCACGGGACCAAGAACGACGCATTCGCAGGGAGATCGCCAACAGCAATGAGCGCAGGCGCATGCAGAGCATCAATGCTGGCTTCCAGTCCCTCAAAACACTCATACCACATAGTGATGGAGAGAAGTTGAGCAAAGCTGCCATCTTACAGCAGACTGCCGAATATATCTTCTCTTTGGAGCAGGAAAAGACACGGCTACTGCAGCAAAACACGCAGCTTAAGCGCTTCATCCAGGAGTTCAGTGGCTCATCCCCAAAGAGAAGGCGTGCAGAGGAGAAGGATGAAGGAATAGGATCTCCGGATATtctggaggaggagaaggtggAGGACCTGCGGCGAGAAATGATTGAACTCCggcaacagctggagaaagaacGCTCAGTGCGCATGATGCTAGAGGAGCAGATTCGCTCTCTGGATGCCCACCTATACCCTGAGAAACTGAAGGTGATCGCCCAGCAGGTGCAGGAGCAGCAGGTGCAGACTCAGACTCTGCTTCGCCTGCAACAGCAGGAAcaactggagagagagagcactccTGCCCGCAGTACACAGGTATATTCTCCAGCCACACCATCTGCCCCTACGCATCACACCACTGTTATTGTTCCTGCCCCAACGTTGCCACCTCCTCCCCATCATGTCACAGTGGTAACTATGGGCCCTGCCTCTGTAATCAACACAGCATCGACATCACGACAGAACTTGGACACCATAGTGCAGGCTATCCAGCACATCGAGGGCACACAGGAGAAGATGGGTGTGCCTGAGGAAGAGCAGCGTCGGGCAGTCATCGTCACCCCGGGCCGTGTCTTAAATGACACTGCGGACTCGGACACTGCCTCTGACAATGAAGGTTCTGAGGACTGTTAACTGCACCAGGCAAACAGGGTGGCCATATGGAGTGGCCTCCTACAGACTCTTTTTCACTCCCTTTCATTATCTCTTTCTCATATAGGCTTACAAACCCATAGGGTAGGAAATGGTTTAGTCAAAGATTcaatgaacaaaaaaacacaactaaaaAGCAAACTTACCATCTCACCCATACTTGGACTTGTACTCGCACTCTCATACAGTGCACTAGACTATTTTATCACTCTGGCCCATTATGTGCATCCATCCATACTTCCAGAACAGGCTTTCagttgctaaataaataaataaatcttttccaTTCATACATGATGTTGAAATGAATCAGGCTCAAACAACTGTCTCACATAACTGTTCTTCTGCATTCTCCCACTATTCACTGCTTTTTTCTGGAATGGACAGTTTCTTGggcctttctgtctctcacccatcccttcctttttttcctgtaaaattCTCTAACTGGAGAAACTCTTACCTACCAACCCATCCCTCTCACACCTATGACTGTCTAAAGAATCTTTTGATTACTCCAAACATCCCTCCGTTCTTCCTTCTGGCCTAGGGAGGCTTTAGAGCACCACTGTGAGCTTACCTAACTTCAGAAGCCAAATGTACTCTTCATTGGCTTTGAATTTTTAGAGGAAATGACATGAGTACAGCCATCATGGGAATCCATTTAAGATGCCTCTGGTCCCAGCAATGCTCCACCTCATGGAGCGCAAAGATCATCACTGCACTTTGTAAAAGTTCTTTTGGAGGGAGGGGACAGAATGTGCACTTGGTGTCATTCACACTCAGCTGGGCTGGGTTCCCAGTACAATAAACTTATGTAGGCAACGCAGCCCTACCACCACATCAAACTCCCAGCTCTTTTATGTTGTTCCTAATGCTGGTCTAAtgttttttgtctattttgtcCATCAAAATTGAATAAGCTAACCAGTAGGTGCTCTGCAGAGAGATGTATTTCCCTTACGTGTGGTTCAGCTAGGAGGATATATGCTGTGCTGGCATCAGCTGGCTGCCTGAGGGTCAGTctctcatcaaaaaaaaaaaaaaaaggtggcaGTAGTATTTGCAGATTTCTCAAAGCCCATAAGCACTCTATGCAGCTCCCTCAACAGCCATCTGCTTGTGTAGCCCCTTTGGGGAATTTAAAGAAGCATGTCTGTCCTCAAGGATGTTTTATTCGATTCTGTGACACTTGCTCTATGCATTCAGTGGTCTCTGCTTGCTggcatgtttgtcttttgtttttacttttcagttcttttctgtctgtgtgtacagCAATGCCTGTGTACATGGCAGATAATCTTCTGGAGCTTTAGCCCATCTAAATGGAGCTGTATGGTTGCATGGGCTCTCTGATACATCCCAATGtatgaagaaggaggagaaaaggAGTGCAGACTGCATGACATCCTACCTAAGTGTGTAGAGAGAGGGCAGTGGTTTGCTTTAACTTCTGTTTTGGAGAAACATTCTGAAGTTGACTTGCAGCTCAGAAGTATTCAGATTACCTGTCTTGTCCCATCCAATTTCTCCCCTCTCATGGCACTATGGCATGAACATGGGTTGTGATTTCAGACATTCCAGAATGTCCTAGCACCAGGTCCATGTTCAGTTTTCTCCTGGCTCTGCAAATCGATTATGATATTTGTTTGATTTAGGAACAGATGTGACGAATCTGTGTATAAATATTACTGAAACAAATTATGCCTGCCCCAGTGTTACACGGAACCACTTGCTGCTTGACATACTGCTTTTCCTTCAGGATTTATCAAATGCTGTCAGCATGTTGGCTTTCTCTGGCCCTCTCAGTCAGGCTTCAGTGTTGACTGCTGAGAAACAGGGCTTCTAAAAGAATGGGCCCGTCAGATAATAGATGGAGTTGagatatatcaatatatatacacatattttttaattcgAGTGATGGTCAGATTGGGTTATGAAgagttttgtttgtcttttcttaAAAGTCaggttttgttttcttattttttcttgctgtatttctgtatgTATAAAAGCTCAGCGGTTCCTCAAAACTCAGCAATTTCTCTATCAAAGCCACAGGGTGTCTCTGCTTTTTTTATTCTACTTTATACTTTCAAATGTCtgtaaaaatactgtaaaaaaagaaGACTGTGTCAGAGGAATGTGTATGTGAGGGTTTAACCAATAGTGTATAAAATTATGGATATAAagcacttaatttttttaagagaTGCCTCCTGAATTGAAGCTCTTGGTGCTGTGAGTCCAAACCACGCAGCTGTTGAACCCTTCTTGACTCTTGGAATGTCTCCGTCTCCGAAGTCTCTAGACTCGTCCCctctctcttccctccctccctcttcaTGTGCCACCTTCCTTTTTTGTTGGACACTCTGTCCCATTTGGATGTTGAGAAGCTGTTATattttgttctcattttttttttaaagaaaaaaaaaactggggaaAAGAGGCATGTGCCTTTGTAAAGACA

Function

symbol description
tfap4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TFAP4 (transcription factor AP-4).

NR:

description
PREDICTED: transcription factor AP-4

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09108 TFAP4; transcription factor AP-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917074.2 True 4146 mRNA 0.44 7 17067237 17085755

Neighbor

gene id symbol gene type direction distance location
LOC117595691 NA coding upstream 68543 16997366 ~ 16998694 (+)
LOC113528633 NA coding upstream 69585 16995855 ~ 16997652 (+)
LOC113528175 pam16,LOC108276516,LOC108431934,LOC107601580,LOC107553663,LOC107715621,LOC107718618,LOC106601835,LOC107695711,LOC105924796 coding upstream 95470 16832403 ~ 16971767 (+)
hmox2b hmox2,LOC108431933,LOC106518701,LOC108247647 coding upstream 247969 16808875 ~ 16819268 (+)
cfap70 cfap70 coding upstream 258587 16779776 ~ 16808650 (+)
trap1 trap1 coding downstream 233987 17319742 ~ 17342075 (+)
ccdc137 NA coding downstream 663419 17749174 ~ 17767669 (+)
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding downstream 722517 17808272 ~ 17810490 (+)
mfsd11 mfsd11,mfs11 coding downstream 935330 18021085 ~ 18043102 (+)
LOC113527984 LOC108258094,LOC103035820,LOC108438916 coding downstream 976282 18062037 ~ 18063661 (+)
G212541 NA non-coding upstream 11430 17052378 ~ 17055807 (+)
G212446 NA non-coding upstream 139255 16869758 ~ 16927982 (+)
G212449 NA non-coding upstream 139868 16923805 ~ 16927369 (+)
G212445 LOC108276517 non-coding upstream 152664 16842948 ~ 16914573 (+)
G212441 NA non-coding upstream 256487 16810311 ~ 16810750 (+)
G212571 NA non-coding downstream 94039 17179794 ~ 17180253 (+)
LOC117598773 NA non-coding downstream 190899 17276654 ~ 17285842 (+)
G212582 NA non-coding downstream 198528 17284283 ~ 17284486 (+)
G212589 NA non-coding downstream 210653 17296408 ~ 17296874 (+)
G212662 NA non-coding downstream 299209 17384964 ~ 17385177 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 920911 16140330 ~ 16146326 (+)
G211913 NA other upstream 1098478 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 2075787 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 2445449 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 3573295 13464085 ~ 13493942 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 1529 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 612918 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 1097938 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 1324086 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 1339424 18425179 ~ 18434528 (+)

Expression


Co-expression Network