rusf1 (c2h16orf58,cunh16orf58,LOC102793205,LOC107577286)


Basic Information

Item Value
gene id rusf1
gene name c2h16orf58,cunh16orf58,LOC102793205,LOC107577286
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3182985 ~ 3191017 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917078.2
CACATCTATTAGCCAATCGGAAAGTAAGCTGCATGCACGACGTGGCGGTGAAGACAAACAAGGAAGTGAATTTTGGTAATCGCGGTGAGTGGATGTGAGGACATGGCGGATGGAGGTGGAGGAGTCATTGCAACCGAGAAGTACGGCTCCCAGGAGGCCTGGAGGTACCGGATAAAGGATGGAGGGATgcggagagagagaatgggacAGGAACAAGTAACTAGGGGGAAATCAATCAGTGATGCATTCAAGAACGTTTTCCTGCCTCAGGGTTACCCCGAGAGTGTCAGCGAGGATTATCTGCAGTATCAGATGTGGGATACGTTGCAGgctttctccagctctctctcgGGCACACTCGCCACTCAGGCCTCACTGAAAGGAGTCGGAGTCGGAAATCAAGAAGCAACGGTTGCTGCAGCTACAGTGACTTGGTTACTCAgagATGGAACAGGGATGTTGGGGAGAATCCTTTTCGCCTGGTTTAAAGGGAGCAAACTGGATTCAGAAGCCAAAAAATGGAGGCTTTTTGCTGACATTCTCAACGACGTCGCGATGTTAATGGAGATCACCGCACCTCACTTCCCTCCTTTCTTCACTCTTATTGTGTGTATTGCCGGAGTGTTTAAGTCGATTGTGGGCGTGGCCGGAGGAGCGACAAGAGCGGCGTTAACTGTTCATCAGGCTCGCAGAAACAACATGGCCGACATCTCTGCTAAAGATGGCAGTCAGGAAACACTGGTCAATCTGGCAGGACTGCTGGTTAGCTTAGTGCTAATCCCACTTGTCACTGATAACCCTGtgCTGACATTtattctcttcttcctcttcactGCACTCCACCTGTTTGCCAACTACAAAGCTGTCAGGTCTGTCGTCATGGAGACGCTGAACGAAGCTCGTCTGGCAATCGTCCTCCGTAGGTATTTGCTTGACGGACAGATCCTGAGTCCAGCAGAAGCCAATCAGAGAGAGCCGGTGTTTCTGGAGTTTAAAACGGAAGTGCGCGTCAGACTCGGGGTCAGACTGGGAGAAGTCATTAAACAGCCTCAGGAGCTCCAACTGGCTTTGAGGAACAACACCAGGTCCTACATCATAGCAATACAAAATGggagcgtgtgtgtgtgtttgagtgctgATGCGTCAGTGCGTGATGAGATCATGGCAGCGTGTCAGGCTGTGTGTATCAGCACTGTGTTACACTCGTCACCGCAGCATGGAGCTCTTACACACCTCTCCGAGATCAGAGACTCGTGGGAACTGGTTTCTGAAAGTCACAAGCTGATGGACCAAATTTTCCAGCCCTTTTTCACAGGTCTAGAAAAAGCCGGGTGGCAGACGGACCGGACGCTGCTGGACTGGGACGAGTGGAGAGCGGAGTGGAGGAAGAAAGGCAGCTAAGACAACGAGCCAAGACGTTTTAATTCTGTGTTTCAGGGCTGTTTCAGTTGTGAGGGACCAGCGAAGATGAACAAGCCTGTTctttcagtttgttttattaaattttagaaTAGA
>XM_026917079.2
CACTTCCGCCATGGTGCTATTCTATTGGCTAAGTCCCTCTCCTACGTCACATCTATTAGCCAATCGGAAAGTAAGCTGCATGCACGACGTGGCGGTGAAGACAAACAAGGAAGTGAATTTTGGTAATCGCGGACATGGCGGATGGAGGTGGAGGAGTCATTGCAACCGAGAAGTACGGCTCCCAGGAGGCCTGGAGGTACCGGATAAAGGATGGAGGGATgcggagagagagaatgggacAGGAACAAGTAACTAGGGGGAAATCAATCAGTGATGCATTCAAGAACGTTTTCCTGCCTCAGGGTTACCCCGAGAGTGTCAGCGAGGATTATCTGCAGTATCAGATGTGGGATACGTTGCAGgctttctccagctctctctcgGGCACACTCGCCACTCAGGCCTCACTGAAAGGAGTCGGAGTCGGAAATCAAGAAGCAACGGTTGCTGCAGCTACAGTGACTTGGTTACTCAgagATGGAACAGGGATGTTGGGGAGAATCCTTTTCGCCTGGTTTAAAGGGAGCAAACTGGATTCAGAAGCCAAAAAATGGAGGCTTTTTGCTGACATTCTCAACGACGTCGCGATGTTAATGGAGATCACCGCACCTCACTTCCCTCCTTTCTTCACTCTTATTGTGTGTATTGCCGGAGTGTTTAAGTCGATTGTGGGCGTGGCCGGAGGAGCGACAAGAGCGGCGTTAACTGTTCATCAGGCTCGCAGAAACAACATGGCCGACATCTCTGCTAAAGATGGCAGTCAGGAAACACTGGTCAATCTGGCAGGACTGCTGGTTAGCTTAGTGCTAATCCCACTTGTCACTGATAACCCTGtgCTGACATTtattctcttcttcctcttcactGCACTCCACCTGTTTGCCAACTACAAAGCTGTCAGGTCTGTCGTCATGGAGACGCTGAACGAAGCTCGTCTGGCAATCGTCCTCCGTAGGTATTTGCTTGACGGACAGATCCTGAGTCCAGCAGAAGCCAATCAGAGAGAGCCGGTGTTTCTGGAGTTTAAAACGGAAGTGCGCGTCAGACTCGGGGTCAGACTGGGAGAAGTCATTAAACAGCCTCAGGAGCTCCAACTGGCTTTGAGGAACAACACCAGGTCCTACATCATAGCAATACAAAATGggagcgtgtgtgtgtgtttgagtgctgATGCGTCAGTGCGTGATGAGATCATGGCAGCGTGTCAGGCTGTGTGTATCAGCACTGTGTTACACTCGTCACCGCAGCATGGAGCTCTTACACACCTCTCCGAGATCAGAGACTCGTGGGAACTGGTTTCTGAAAGTCACAAGCTGATGGACCAAATTTTCCAGCCCTTTTTCACAGGTCTAGAAAAAGCCGGGTGGCAGACGGACCGGACGCTGCTGGACTGGGACGAGTGGAGAGCGGAGTGGAGGAAGAAAGGCAGCTAAGACAACGAGCCAAGACGTTTTAATTCTGTGTTTCAGGGCTGTTTCAGTTGTGAGGGACCAGCGAAGATGAACAAGCCTGTTctttcagtttgttttattaaattttagaaTAGA

Function

NR:

description
RUS1 family protein C16orf58 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917078.2 False 1515 mRNA 0.50 15 3182985 3190970
XM_026917079.2 True 1547 mRNA 0.50 15 3182985 3191017

Neighbor

gene id symbol gene type direction distance location
rpl3 LOC100304518,LOC103392522,LOC108434904,LOC103374755 coding downstream 23722 3154981 ~ 3159263 (-)
LOC113528657 NA coding downstream 26276 3156617 ~ 3156709 (-)
LOC113528655 NA coding downstream 27555 3155296 ~ 3155430 (-)
rpl23 RPL23,rpl23,rl23 coding downstream 110158 3066745 ~ 3072827 (-)
ccdc103 ccdc103 coding downstream 119174 3059168 ~ 3063811 (-)
prr14 NA coding upstream 9130 3200147 ~ 3213935 (-)
cd2bp2 cd2bp2,LOC107554127 coding upstream 23469 3214486 ~ 3218927 (-)
LOC113528532 tbc1d10b,LOC107737756,LOC107554125,LOC107582992 coding upstream 56684 3247701 ~ 3271970 (-)
abcc1 abcc1,LOC107654509 coding upstream 162148 3353165 ~ 3396356 (-)
gspt1l gspt1l,LOC100304847,LOC108438004,LOC107721494,LOC107654506,LOC106529451,LOC104930119 coding upstream 225382 3416399 ~ 3435123 (-)
G204664 NA non-coding downstream 8708 3171262 ~ 3174277 (-)
G204524 NA non-coding downstream 149757 3028815 ~ 3033228 (-)
G204518 NA non-coding downstream 212116 2965883 ~ 2970869 (-)
LOC117598767 NA non-coding downstream 582633 2599709 ~ 2600352 (-)
G204317 NA non-coding downstream 641460 2541126 ~ 2541525 (-)
G205038 NA non-coding upstream 409985 3601002 ~ 3602239 (-)
G205030 NA non-coding upstream 426154 3617171 ~ 3620119 (-)
G205040 dus1l,LOC102781131 non-coding upstream 439677 3630694 ~ 3631383 (-)
G205063 NA non-coding upstream 513266 3704283 ~ 3738959 (-)
G205145 NA non-coding upstream 757832 3948849 ~ 3957710 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other downstream 104967 3073977 ~ 3078018 (-)
si:dkey-283b1.6 NA other downstream 143333 3034246 ~ 3039652 (-)
LOC113528062 LOC108276032,LOC108276106 other downstream 644874 2433149 ~ 2538111 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other downstream 838073 2331676 ~ 2344912 (-)
ifi35 ifi35 other downstream 987445 2112445 ~ 2195540 (-)
nde1 nde1 other upstream 191814 3382831 ~ 3413767 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other upstream 577838 3768855 ~ 3865849 (-)
G205173 gfap,LOC103392664 other upstream 849464 4040481 ~ 4044575 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other upstream 901896 4092913 ~ 4117643 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 1531400 4722417 ~ 4734902 (-)

Expression


Co-expression Network