grin2ca (grin2c,LOC100329743,LOC107658706,LOC107758122,LOC107559244)


Basic Information

Item Value
gene id grin2ca
gene name grin2c,LOC100329743,LOC107658706,LOC107758122,LOC107559244
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11861586 ~ 11919663 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917084.2
CTGACATGTAGTGGAAGAGGGCGCAGGATTACAACCGGACACAGTAATCCGCGGGCCAAGACATCACTCACCACTACAAGGACAAGTATTCTCTACAAACAAACATCAGTTTAGTAGATACTGTAGCGACCTCTAACCTACGCAATTATCCcggtagagagaaaaaaacaagagttTTACcgagagaagaaaagaggaaagcTCACTGCAGCTTAGAAGTTACAACCTGCAACAAGAACACAAATGGTCGCAGCCCTGCCCGCTGGTCTGTGCCATCTGTCTGCCAGCCTCCACACCCCGTCTGCATCTGGAGTAATTTCAGCTTGTCCTTAATGACAAGAGCACAgtggacacacagctggagaACAGGTAATCGAGGTTCAGGATCTTCCAGAGATACTTCAGGGTTCTTTTCTGGTGTTCGCCTGAGGGACTACACATGAGCTCCTTTTTCATTTGGAAGAATTTGCTGTTTCTTCGATCTATATGTTGGACCATTTTTGCACCTCTTTGGACTTCACATGGAGCCAGATGGAAGAACAAGATGATGTGACCTTCTGCCAAACTGCTCGAAACCATGCCACCGACACAGCAGGCTCCTCCATCCACTCTGAAATAGACTCAAACAAGTGCGGGAAGCGGAGAGTGAGCCGTACAGAGGGACAGAGTGGggagcgagagtgagagaaaaagaaaaagaaacggGACATTGGAGTCACAGAGGAGGAATGTGTTGTCAGGAGCCTGGGCTGGATGCAGTTTGTCATTGCAGGCAGTAGGCGAGTGAGATGGGCGTTCGTCTAGGCCTCCTGAGCGATGCTCTGTGGCCGCcactgctgttgttgctgttgctctGTGCCTGGCACTGCTGCTGGGGCCGGCCATTCACGATGCCTGACCCTACTGTGAATGTAGCAGTGGTGTTCAGTGGCTCTGCCTATCAGGTGGAGATTAAAGGGCGCCTGAGCCGGGAGAACTTCCTGGACCTGCCTCTGGAGGTGAACCCCATCACAGTGTTGGTGAATGACAGCAATCCTCGGGCACTGTTGACACGCATCTGTGACACGCTGGCTGCTAATCGCGTGCATGGTGTGGTCTTCGAGGACAACATCGGCTCTGAGGCTGTGGCACAGATCCTGGACTTCATCTCGACGCAGACGTCCGTGCCCATCGTAGGCATCAGTGGGGGGTCTGCTGTCGTCTTGCCATACAAGGATGATGGCTCCAATTTCCTGCAGCTGGGTGCTTCCATTGAGCAGCAGATCAATGGCATGTTTAAAGTGATGGAGGAGTACAACTGGGACAGTTTTGCAGTGGTGACTAGCCAGTACCCTGGTTACGAGGCCTTTGTGGACTACATCCGCTCCTTCACAGATACCTCTTACTTTCTGTGGGAGCTACAGAATGTACTGACATTTGACATGTCAGCTGATAGCATGAACGACCTGCGTGCACGGCGTCTGCTACAGCAGATCGATGCTCAGGTGCTGCTGGTCTACTGCTCATTTGAAGAGGCTCAGTATCTCTTCAGCATGGCCAGAGAGGTGGGTCTGGTTGGACCTGGGTATATTTGGATCATCCCCAGCCTGGCAGTGGGCAACCCCAACCTGCCACCACCTGACAGCTTCCCTGTTGGCCTTATCAGCATCATCACAGACAGGTGGAAGATGAGTCTAAGGAACAGGGTGAGGGACGGCGTGGCAATTGTAGTGAAAGCGGTGGAGAGCTTCCGCAAGCACAGAGGTTTTATTCCTGATGGACATGCTGACTGCCAGTCCAGTCCAGTGCAGTCAGAAaacaatgacacactcttcaGGCACATGTTGAATGTGTCATGGGATCACACAGACTTCTCCTTCAACAGTAATGGATATCTCGTCAACCCTTCCATGATTATCATCACACTGGACCGGGACAGGCAATGGGACAAGGTTGGAAATTATGAGTCTGGTATACTGCAGATGCGATATCCCGTTTGGCCTCGGTATGGAACGTACTTGGAGCCAGTGTCTGATAACCGCCATCTAACAGTGGCCACCCTTGAAGAGAGGCCATTTGTGATAGTGGAGGCAGTAGACCCCATCACTGGCACCTGCCTCAGCAACACTGTGCCCTGCAGACGCCAATCAAACAAGACGGAGGCGATCATTGGAGATACTGAGCCCTACACCAAACTGTGCTGTAAAGGCTTTTGCATCGACATCCTAAAGAAACTTTCCCGTAACATCAAGTTCTCCTATGACCTCTATCTAGTCACCAATGGCAAACATGGCAAGCTCGTCCGAGGCGTTTGGAATGGCATGATTGGAGAGgTGGTCTATAAGAGGGCAGACATGGCCATTGGGTCTCTCACTATAAACGAGGAGCGTTCTGAGATCATTGACTTCTCTGTGCCGTTTGTGGAGACGGGGATCAGTGTGATGGTGGCCAGGAGCAATGGAACTGTGTCTCCATCAGCCTTTTTGGAGCCCTACAGCCCTGCTGTGTGGGTGATGATGTTTGTGATGTGCCTGACAGTGGTGGCcgtgactgtgtttgtgtttgagtacTTCAGCCCTGTAGGGTACAACCGTAGCCTGGTCAGTGCGAAAGATCCTGGTGGGCCAACCTTTACCATTGGGAAGTCGGTGTGGCTGCTTTGGGGGATTGTCTTCAACAATTCTGTGCCGATTGAGAACCCAAAGGGCACCACAAGTAAGATCATGGTGCTGGTATGGGCCTTCTTTGCTGTCATCTTCCTGGCCAGTTACACGGCCAACCTGGCAGCATTCATGATCCAGGAGCAGTACATTGACACTGTTTCTGGACTGAGCGACAAAAAGTTCCAGAAGCCACAGGAGCAGTATCCACCATTTCGCTTCGGTACAGTGCCTAACGGCAGCACAGAGAGGAATATAAGGAGCAACTATCCTGAGATGCACTCCCACATGGTCAAGTACAACCAGAAGGGTGTGGAAGATGCCCTGAACAGCCTCAAAACTGGCAAACTTGATGCCTTTATTTATGATGCCGCCGTGCTGAACTACATGGCTGGTAAAGATGAGGGCTGTAAACTGGTGACCATTGGCAGTGGGAAGGTTTTTGCAACTACAGGCTACGGCATTGCCTTACAGAAGGAGTCCCGCTGGAAACGGCCCATTGACCTTGCCCTCCTCCAGTTCCTCGCTGATGGTGATACTCAGAAGCTGCAGACAGTGTGGCTGACTGGAATCTGCCGCAATGAGAAGAAAGAAGTGATGAGCTCTAAGCTGGACATTGACAACATGGCTGGAGTGTTCTACATGTTGCTGGTGGCCATGGGCCTCAGTCTGCTGGTGTTTGCTTGGGAGCACCTGCTCTACTGGAAACTACGCCACTCTGTGCGCAAGTCTGAACGCCTCGACTTCTTACTGGCAATCAGTAGGGGTATCTACAGCTGCTTCAATGGTGTGGAGGATACAGACCAAAATGGAAGTATACAGAGCCCAGATGTCACTAGCAGTTACACCCAGGCCAACATGCTGAAGATGCTTAAGACAGCCAAGGATATTGTATCCTCTGCCAGAGTGGAGAACTCCTTGGACAATGCCACTAAGACTATTGAGAATTGGAGCCGCCGAGCTCCAGAAGCTTCAAAACCTAGTTTTCAGACCCGTCTGATTAGCACTGATTCCAGTCATGGCCGTTTGCCCTACATCTCCAGtgtcaccaacaaccatacaCCTTACACCCAGAGGGCACTGACTCCCACTTTCCCCCTGCATTATGGAGACAGTGCCACTTTGATAGAGAAACCTCGGGTAGTGACAAGGCCTACCCCATTACGATACACTCTTCCCGCACGGACAAGTCACCATCATATATATGAACGGACCCTACCTATTTCCAGTCTGAGCAGTCCCCATATTGCTATGAGGGACCCCCCACCTcccacagccccaaagccacacCACAGCGCTAGGCTATTTATGGACAGCCAGGGCTGCCATCAAATGGCCTCCTCCTTTCTCCCTTACCGTGAGTTCCATGTCCCTGACATCTATGTGGAACACCAAAAACCTCCTGAGAGCCGGAAACTGTACACTGAAGGACTGGGCCGCAAGAAGAGGTCCCACAGCTATGTGGCGCCATCACCAGAACCTCGGCGCAGGAATGATTATGATGAACCAACCTCTTGCCTGGCTGAGCTTAGAGCTAATCAGCTCCTGGAAAACCATGCCCATACTTCACCCTGCATGGGAAGCCACTACCAAAGGCCCAGTGGCAGCTGCGACTCCTGCATGAAACCATACTTGGAGCCAGATATGGATGATGTCCCTCTGCTGGGAAAGGAGAAACTGAACCGTCGCGCCTCTTTCCTCAGGGCCACATGGGGCGGTGACAGGATGCGGCATCTAGATGAGAAGCCTTCCACCTCTGCAACTTCTACCAGTCGAATCAACATGCCTGACCTCTTCCCTCGTGTAGTGGTAGCTAATCCCAAGCCTTCAAAGATGTATGCCAGTGCTAGTAACAACTTTTGCTACAATATGCCAGCTGAGCCTGCCTATCTTGATCCAGCTCACATGGGATCCTACCCCTACAAGCCACAGAAACTCAAATACTCTCATTCTACCCGCCTTCCCTCGTATCGTGAGGCAATTCTGCAGAATGCAGCAGCTTTGCGGCGGTCCTCTTCAACAGTTGTGCACAGACATTACTCCACCTACCTGAACTCATACACTGACTTGCCAGTATACATGGGTCCACTGGCACAGGGGCCTGCACATTTCTATGATCACTCCAAAGACATGTGTCACATGTTCCCCTGCATCAACCACTGCACGAATGATGCTGCCCTGGTAACCCGGATAGGTGGTAGGCCTGTGATGTATGAAAACACTGCTTTTAGAGGCTACGAGGGTGTTGGATGCTCACGTGAACCTCCTCTACAGCCACTGCACAGTTTACCAGCCTCATCTAAGAACAGGGACCGCAGACAGGTTTTGGTGGCGCGGAGGCATAACAGTCCCTATGTGCCAAAGCCCTGGGGCAGAGTGTCTAGTCTGGAGTCTGAAGTCTAAAAGGCTGTCCCATTATAAACTTAGAGGAAGAAATGTGTGAACTTCCAGAACTTCCAGGCTTTAAATCttgcaaaaataaaagctgtgcTGAAGGTGGAAGTGGACTGGAAATGATATTCCCAGTGCAATAATATGCAAGGCAGCAGAAAGGGGAGTAAGGGCACAATTATGTGATTACTGCTGGGACATCAGTATACTTTAAAATACTAAAAGAAGTAAACATAATATTGAATAATTGAATTCTTATATATTAAAACTGAGcctatacattattattaaaaaaaaaaaaagatttttaaatgcagttgcATAAGTACGGTCATTCTCTACAAACAGATGTAACAGGTTGCAAGGGGTAGTCCACAAGGGTTGAATTAATCTTCCTTTAACTTTGATTTTTGGGCAGATCAGCATTCCACAGTTTTGGAGTCAACTGCAAGGCATTGCAAAATTTTATAAATCAACCACTACAAAAAGGTCTTCCAACAATTTTTTGTAAGTTTGCAGAAAGCCGTCTGTTTGGGGCTTTTTATTTGCTCCAGTGATGTAACTTAGATTTTAAGACTGGTGAACTGCAACTGATTTTTCCGTCTGTATTTCCACAATTGtttcactgtttaataaatgaCTGGTGGCTTTAAGAGCCTTTTGGAA

Function

symbol description
grin2c Enables NMDA glutamate receptor activity and glutamate-gated calcium ion channel activity. Involved in calcium ion transmembrane import into cytosol. Is integral component of plasma membrane. Part of NMDA selective glutamate receptor complex.

NR:

description
PREDICTED: glutamate receptor ionotropic, NMDA 2C-like isoform X2

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG:

id description
K05211 GRIN2C; glutamate receptor ionotropic, NMDA 2C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917084.2 True 5696 mRNA 0.50 14 11861586 11919663

Neighbor

gene id symbol gene type direction distance location
rfx1a LOC108260824,LOC108432209 coding upstream 11250 11830043 ~ 11850336 (+)
s1pr5a s1pr5a,LOC108260797,LOC108432217 coding upstream 118513 11739620 ~ 11743073 (+)
si:dkeyp-69e1.8 LOC108278349 coding upstream 184125 11671706 ~ 11677461 (+)
hmgxb4a hmgxb4 coding upstream 189985 11662221 ~ 11671601 (+)
ankrd54 ankrd54,LOC107728844,LOC107563363 coding upstream 199466 11657529 ~ 11662120 (+)
gaa gaa,LOC106601771 coding downstream 114223 12033886 ~ 12045504 (+)
cbx4 cbx4,LOC108260285 coding downstream 196776 12116439 ~ 12122136 (+)
cbx8a cbx8,LOC108261002,LOC107085518 coding downstream 209928 12129591 ~ 12132297 (+)
narfl narfl,LOC106606697 coding downstream 345042 12264705 ~ 12272091 (+)
fahd1 fahd1 coding downstream 367557 12287220 ~ 12288452 (+)
LOC113528367 NA non-coding upstream 38676 11808261 ~ 11822910 (+)
G209410 NA non-coding upstream 152650 11708728 ~ 11708936 (+)
G209392 NA non-coding upstream 227105 11633912 ~ 11634481 (+)
G209390 NA non-coding upstream 243352 11618035 ~ 11618234 (+)
LOC117598771 NA non-coding upstream 879293 10971721 ~ 10982293 (+)
G209775 NA non-coding downstream 100200 12019863 ~ 12021132 (+)
G209798 NA non-coding downstream 141906 12061569 ~ 12061782 (+)
G209863 NA non-coding downstream 213597 12133260 ~ 12133471 (+)
G209884 NA non-coding downstream 281575 12201238 ~ 12202277 (+)
G209886 NA non-coding downstream 288573 12208236 ~ 12208486 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 283763 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 473566 11280080 ~ 11388020 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other upstream 1080127 10349402 ~ 10781459 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 1873813 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 2798173 9061563 ~ 9063413 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 129744 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 215606 12135269 ~ 12140371 (+)
arhgap17b LOC108279379,LOC108432202 other downstream 239040 12158703 ~ 12190070 (+)
ndufb10 ndufb10 other downstream 447903 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1515718 13435381 ~ 13445686 (+)

Expression


Co-expression Network