jmjd6 (jmjd6,LOC107748872,LOC107565873)


Basic Information

Item Value
gene id jmjd6
gene name jmjd6,LOC107748872,LOC107565873
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 17981013 ~ 17985888 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917086.2
ACCCAAGTACccccccccccctcccccctcccGAGAAGTTTCCCGTCTCCGATAATCGTTACAGaaagaaacaattttttttgttcttgttaatCCGGAGGTGGTTTCAAGACAGAAACTTGAATAAGTTAGCTCCTGATTTCGCTTTACTGCTTGTTTGCTAGTCAGTTTTATCGCTCCGTTCACTGGTACCTTGTGGAGAGCTAGCCTCGCCGGCTAACCACTTTTTCTGGAGACTCCGCTTGAAACACACCTAGAAGGAATGAACCACAAAAGTAAGAAACGAATCAAAGAAGCGAAACGGAGTGCTAGACCTGAACTAAAGGATTCACTTGACTGGACAAAACATAACTACTTCGAGACTTTTGATCTTTCGCACCGGACAGTGAAGGACAATGTGGAGCGGGTGGATGCCTTGCACCTGAGCCCAGAAGAGTTCATTCAGCGCTTCGAGAAACCGTACAAGCCTGTAGTTCTTCTTAATTGCCAGGAGTCATGGCCTGCCCGGGAGAAATGGACCCTGGAACGCCTGAAGCGCAAGTACCGTAACCAGAAATTCAAGTGTGGGGAGGACAATGATGGCTACTCtgtgaagatgaagatgaagtaCTATGTTGAATATATGGAGTCCACGCGAGATGACAGTCCGCTCTATATCTTCGACAGCAGTTTCGGTGAGCATGCCAAACGCCGCAAGCTGCTTGAAGACTATCAGGTGCCACTCTTCTTTAGAGATGATCTCTTTCAATTTGCTGGAGAGAAGCGCCGACCACCTTACAGGTGGTTTGTGATGGGCCCTGCACGCTCTGGCACAGGCATTCACATCGACCCACTGGGCACGAGTGCATGGAATGCCCTGGTGCAGGGTCATAAGCGCTGGTGCctgttccccacacacacaccacgtgAGCTTATCAAGGTGACACGAGAAGTGGGCGGCAACCAGCAGGATGAGGCCATCACCTGGTTCCGTGTGATTTACCCACGCACACAATTACCTTCCTGGCCTGCTGAATTCAGGCCACTGGAGGTTCTGCAGCGCCCTGGAGAAACTGTCTTTGTTCCTGGTGGCTGGTGGCATGTTGTCCTCAACTTGGAGACTACCATTGCAGTCACTCAGAACTTCGCAAGTACCACAAACTTTCCCATTGTTTGGCACAAGACTGTTCGTGGGCGGCCTAAACTCTCCAGGAAGTGGTACAGAATTCTAAAACAGGAGCGGCCAGATTTAGCGGCGCTGGCAGACAAAGTGGACCTGCAGGAGTCCACAGGCATTGCTTCAGACAGCTCTAGTgactcctcatcctcctcttcctctagttcctctgattctgattcagagGCTGAATCAGGCTCTGAGGGTGATGCCATGACCCATCGCAGGAAGAAGCGAAGAACCTGTGTCATGATGGAAAATGGTGATAGCACAAGCCAAGATGACTGTGTGAGCAAAGAGCGTAGCTCCTCTCGATGACCTTCTCCCTTGCTCCACCAGAGGgatctctcactttctctcactctggtTTGCTTCCCAGATAAATCACTAATGACTTAATTGGCACACGAACAAAGGAATGTCCATATGTACATGGTATTTGTTTGACAGAGTGAACACGAAATACTGGCGTAAGGATTATGTCTGTGGTCTTTGCATAATGGCAGGCTGTACAGTACATCCTTTTTCTTGCCCTATTGATAAATTCTTATATTGGGATGAGTGTTGGTAGTGATGTGTTCATCTTCCACACTCTATCTCACTTAATATACTGGAGATGGCTTATTTGTAAGTGTAATTTTGCCTTCTTTGGCTTCCTCCTTACTGATCTGTTACTGTTGTTCAGTATTGTTATGCCCAAGCTTTACACTTATGGATCCTGATGCAGTATAAACTAAAGTAACTATATGAACATTGTTGCTTGATAACATGTATCAGCCCATATGGCTGCATTACTGCAGGGGTTTTATGAATACTGAATTCACGtttgattttatatttctgaAGTTCACTTTTTAGTAGAGTAATACTCCAGTTTTTAATCTATGTACTGCATCTCTAGTGTATATGCACACAATTACAATACACTTCTCTGTACTGAGAATCGAACGCTCCCTCCTCCTGGAAATCTAAAGGTGGTattaaaatgtcaataaatgtttgtgATACATATTTGTA

Function

symbol description
jmjd6 Predicted to enable 2-oxoglutarate-dependent dioxygenase activity and single-stranded RNA binding activity. Acts upstream of or within phagocytosis. Predicted to be located in cytoplasm; nucleolus; and nucleoplasm. Is expressed in brain; hatching gland; heart; pronephros; and somite. Orthologous to human JMJD6 (jumonji domain containing 6, arginine demethylase and lysine hydroxylase).

NR:

description
PREDICTED: bifunctional arginine demethylase and lysyl-hydroxylase JMJD6

GO: NA

KEGG:

id description
K11323 JMJD6; histone arginine demethylase JMJD6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917086.2 True 2173 mRNA 0.46 6 17981013 17985888

Neighbor

gene id symbol gene type direction distance location
foxj1a LOC108274501,LOC108274674,LOC108263299 coding downstream 46597 17930709 ~ 17934416 (-)
crebbpb LOC108279275,LOC107661648,LOC107553628 coding downstream 703657 17180996 ~ 17277356 (-)
glis2b LOC108276531 coding downstream 942069 16974721 ~ 17038944 (-)
vasnb LOC108276517 coding downstream 1049385 16909913 ~ 16931628 (-)
dnaja3a dnaja3,LOC108431932 coding downstream 1151929 16820240 ~ 16829084 (-)
LOC113528252 dnaaf5 coding upstream 115553 18101441 ~ 18161879 (-)
LOC117598994 LOC101884462,LOC107081104,LOC101885893 coding upstream 403994 18389882 ~ 18394978 (-)
LOC117598995 LOC108191637 coding upstream 590716 18576604 ~ 18577377 (-)
znf207a znf207,LOC108278632,LOC108444040 coding upstream 725192 18711080 ~ 18720341 (-)
slc25a23b slc25a23b,LOC108274688,LOC107601238,LOC107698653,LOC108444036,LOC107724434,LOC107689624 coding upstream 749765 18735653 ~ 18756676 (-)
G212891 NA non-coding downstream 80743 17900070 ~ 17900270 (-)
G212871 NA non-coding downstream 94771 17886012 ~ 17886242 (-)
G212856 NA non-coding downstream 101167 17879629 ~ 17879846 (-)
G212818 NA non-coding downstream 110361 17869886 ~ 17870652 (-)
G212843 NA non-coding downstream 184585 17796226 ~ 17796428 (-)
G213028 NA non-coding upstream 55516 18041404 ~ 18043279 (-)
LOC117599003 NA non-coding upstream 84897 18070785 ~ 18076387 (-)
G213407 NA non-coding upstream 806547 18792435 ~ 18849147 (-)
G213549 NA non-coding upstream 1037870 19023758 ~ 19072985 (-)
G213716 tnrc6a non-coding upstream 1431296 19417184 ~ 19422415 (-)
tsen54 tsen54 other downstream 108432 17811613 ~ 17872581 (-)
G212750 LOC100136012,LOC107575789 other downstream 305729 17674827 ~ 17675284 (-)
LOC113528038 caskin2 other downstream 462486 17390186 ~ 17518527 (-)
G212700 NA other downstream 555112 17386211 ~ 17425901 (-)
LOC113528519 NA other downstream 661294 17292773 ~ 17319719 (-)
mettl23 mettl23 other upstream 64847 18050735 ~ 18054216 (-)
LOC117598999 NA other upstream 389796 18375684 ~ 18377363 (-)
si:dkey-204f11.64 LOC108274053 other upstream 837583 18823471 ~ 18827734 (-)
rbbp6 rbbp6 other upstream 1443329 19429217 ~ 19448559 (-)
lyar lyar other upstream 1954466 19940354 ~ 19984149 (-)

Expression


Co-expression Network