syce2 (LOC108258127)


Basic Information

Item Value
gene id syce2
gene name LOC108258127
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13083066 ~ 13094680 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917087.2
ACAGAGTCGATGCTTTAGCGTGATTCTGCGCGCGTGCGGATTCTGCGAGGCCGTTGGGAAATGTCTATTTAACGGCAACTGTTTGTAAACGCAGTTAAACTACAATTACAAGCAAATATATCGTGGAGGTTTAATCATTTTGGCCATGGCGCACCACTTCTTTGGACATCCTGGTTCTGCTACATTTCACTCAACACCTAAAGCCACTCATCACCGTGTGTCAGCAAAGGTGTTAGAAGAGGGTCATGGGTGTAGTTTAGACCACGACTCAACTGGTGAAACACTGCCATTTGTAACCCTGGATGATAGCCATGAGCAGCAAAGcgAGGATTCAGGCATTAATGTCTCACACAGCAGTTCACCAATAAACGAGGTGGATGAGGGTGTTGTCTCCACCCCTAGTAACACAAGAATAGATGAAATTGGGAAGAAAGCACAAGACCTTATAGAGAGGATCAACCAGAGCCGGGCAATGGACCAGAAACTCATGAACAGCTTTGAGGAGAAGCTAATGAAGAAGgTGAGTGAGATGTGCCAGCAGGTGAAGGAGCAGATGTTTGAGTATTATGAGAAACACAGCCGAGGGATGGAGATAAAGCTCACTGAGCTCACAGAAGTGTTGGAGCGCAGCAGTCAGCTCAGCATGGAGCTCCAGGGAGCCAGCCATACACTGGCAGCCATTAACAAAGGTCTGCAGCAAACCCCGGGCCAGTAgatacaaatcacacacacacaaacattgtaGTGAATACAATACTTCCATAGCACCAGACATGTGACAGCCAAAACAAAGTAGTTGAATTTGTTGATGTAATAGAAATACCTCATTATAAAGGCAGGGTGACTGTTTGTACTTGTTTCATACTTGCATGATTCCCACTCAGTGGTAGCAAGATGCGAATAATTTCCCATCATCCAACTTACAAAGAGTGTAGTATGTGATACTGTTTAAAGAGGGAGGAAGAATAGCAGGAACGTTGAACTGTATTAAAAGAATGAATGTAAAATTGAATTCAAGAGACTCCATCAGTGGAGCAACAGAAagattacatttaaaacaaacatgttCTTCAGACAGTGCTATAAGGAAGACTCAGAAGATGTATTAGTCCACCTTGTGTTTTGA
>XM_034310170.1
AGCACTGAAACGAGCGAATCTTTAACGAATGAACGACTCTTCGCCAAGCGGCCATGGCGCACCACTTCTTTGGACATCCTGGTTCTGCTACATTTCACTCAACACCTAAAGCCACTCATCACCGTGTGTCAGCAAAGGTGTTAGAAGAGGGTCATGGGTGTAGTTTAGACCACGACTCAACTGGTGAAACACTGCCATTTGTAACCCTGGATGATAGCCATGAGCAGCAAAGcgAGGATTCAGGCATTAATGTCTCACACAGCAGTTCACCAATAAACGAGGTGGATGAGGGTGTTGTCTCCACCCCTAGTAACACAAGAATAGATGAAATTGGGAAGAAAGCACAAGACCTTATAGAGAGGATCAACCAGAGCCGGGCAATGGACCAGAAACTCATGAACAGCTTTGAGGAGAAGCTAATGAAGAAGgTGAGTGAGATGTGCCAGCAGGTGAAGGAGCAGATGTTTGAGTATTATGAGAAACACAGCCGAGGGATGGAGATAAAGCTCACTGAGCTCACAGAAGTGTTGGAGCGCAGCAGTCAGCTCAGCATGGAGCTCCAGGGAGCCAGCCATACACTGGCAGCCATTAACAAAGGTCTGCAGCAAACCCCGGGCCAGTAgatacaaatcacacacacacaaacattgtaGTGAATACAATACTTCCATAGCACCAGACATGTGACAGCCAAAACAAAGTAGTTGAATTTGTTGATGTAATAGAAATACCTCATTATAAAGGCAGGGTGACTGTTTGTACTTGTTTCATACTTGCATGATTCCCACTCAGTGGTAGCAAGATGCGAATAATTTCCCATCATCCAACTTACAAAGAGTGTAGTATGTGATACTGTTTAAAGAGGGAGGAAGAATAGCAGGAACGTTGAACTGTATTAAAAGAATGAATGTAAAATTGAATTCAAGAGACTCCATCAGTGGAGCAACAGAAagattacatttaaaacaaacatgttCTTCAGACAGTGCTATAAGGAAGACTCAGAAGATGTATTAGTCCACCTTGTGTTTTGAa
>XM_034310171.1
AGCTAATCCGTCTAAATGCGCCTCTGCTTGCCTGTGCGGATGTTCCAAGTGTGTCTACGTGGGTTTCCTTCTCCGGTTTCtatcccacttcccaaaaatatGCAGGCCATGGCGCACCACTTCTTTGGACATCCTGGTTCTGCTACATTTCACTCAACACCTAAAGCCACTCATCACCGTGTGTCAGCAAAGGTGTTAGAAGAGGGTCATGGGTGTAGTTTAGACCACGACTCAACTGGTGAAACACTGCCATTTGTAACCCTGGATGATAGCCATGAGCAGCAAAGcgAGGATTCAGGCATTAATGTCTCACACAGCAGTTCACCAATAAACGAGGTGGATGAGGGTGTTGTCTCCACCCCTAGTAACACAAGAATAGATGAAATTGGGAAGAAAGCACAAGACCTTATAGAGAGGATCAACCAGAGCCGGGCAATGGACCAGAAACTCATGAACAGCTTTGAGGAGAAGCTAATGAAGAAGgTGAGTGAGATGTGCCAGCAGGTGAAGGAGCAGATGTTTGAGTATTATGAGAAACACAGCCGAGGGATGGAGATAAAGCTCACTGAGCTCACAGAAGTGTTGGAGCGCAGCAGTCAGCTCAGCATGGAGCTCCAGGGAGCCAGCCATACACTGGCAGCCATTAACAAAGGTCTGCAGCAAACCCCGGGCCAGTAgatacaaatcacacacacacaaacattgtaGTGAATACAATACTTCCATAGCACCAGACATGTGACAGCCAAAACAAAGTAGTTGAATTTGTTGATGTAATAGAAATACCTCATTATAAAGGCAGGGTGACTGTTTGTACTTGTTTCATACTTGCATGATTCCCACTCAGTGGTAGCAAGATGCGAATAATTTCCCATCATCCAACTTACAAAGAGTGTAGTATGTGATACTGTTTAAAGAGGGAGGAAGAATAGCAGGAACGTTGAACTGTATTAAAAGAATGAATGTAAAATTGAATTCAAGAGACTCCATCAGTGGAGCAACAGAAagattacatttaaaacaaacatgttCTTCAGACAGTGCTATAAGGAAGACTCAGAAGATGTATTAGTCCACCTTGTGTTTTGAac
>XM_034310172.1
GGCTGTGGATTCCACGAGAGGCGTCTCCCTGAACTGGTGCTTCTTTTCACCTAGGCATCTGTTTACTCAGCTAATCCGTCTAAATGCGGTACTTGGTAAAGCTAATCATGACCCATTTTGAAGATACTATGTGAATGATGTGTCAGCTAAATGATTcagCCTCTGCTTGCCTGTGCGGATGTTCCAAGTGTGTCTACGTGGGTTTCCTTCTCCGGTTTCtatcccacttcccaaaaatatGCAGGCCATGGCGCACCACTTCTTTGGACATCCTGGTTCTGCTACATTTCACTCAACACCTAAAGCCACTCATCACCGTGTGTCAGCAAAGGTGTTAGAAGAGGGTCATGGGTGTAGTTTAGACCACGACTCAACTGGTGAAACACTGCCATTTGTAACCCTGGATGATAGCCATGAGCAGCAAAGcgAGGATTCAGGCATTAATGTCTCACACAGCAGTTCACCAATAAACGAGGTGGATGAGGGTGTTGTCTCCACCCCTAGTAACACAAGAATAGATGAAATTGGGAAGAAAGCACAAGACCTTATAGAGAGGATCAACCAGAGCCGGGCAATGGACCAGAAACTCATGAACAGCTTTGAGGAGAAGCTAATGAAGAAGgTGAGTGAGATGTGCCAGCAGGTGAAGGAGCAGATGTTTGAGTATTATGAGAAACACAGCCGAGGGATGGAGATAAAGCTCACTGAGCTCACAGAAGTGTTGGAGCGCAGCAGTCAGCTCAGCATGGAGCTCCAGGGAGCCAGCCATACACTGGCAGCCATTAACAAAGGTCTGCAGCAAACCCCGGGCCAGTAgatacaaatcacacacacacaaacattgtaGTGAATACAATACTTCCATAGCACCAGACATGTGACAGCCAAAACAAAGTAGTTGAATTTGTTGATGTAATAGAAATACCTCATTATAAAGGCAGGGTGACTGTTTGTACTTGTTTCATACTTGCATGATTCCCACTCAGTGGTAGCAAGATGCGAATAATTTCCCATCATCCAACTTACAAAGAGTGTAGTATGTGATACTGTTTAAAGAGGGAGGAAGAATAGCAGGAACGTTGAACTGTATTAAAAGAATGAATGTAAAATTGAATTCAAGAGACTCCATCAGTGGAGCAACAGAAagattacatttaaaacaaacatgttCTTCAGACAGTGCTATAAGGAAGACTCAGAAGATGTATTAGTCCACCTTGTGTTTTGAa
>XM_034310173.1
ACGAGAGGCGTCTCCCTGAACTGGTGCTTCTTTTCACCTAGGCATCTGTTTACTCAGCTAATCCGTCTAAATGCGGTACTTGTAAGCATTGCcaactcacagctccagtgtcacTGGTTTCAGCCTCTGCTTGCCTGTGCGGATGTTCCAAGTGTGTCTACGTGGGTTTCCTTCTCCGGTTTCtatcccacttcccaaaaatatGCAGGCCATGGCGCACCACTTCTTTGGACATCCTGGTTCTGCTACATTTCACTCAACACCTAAAGCCACTCATCACCGTGTGTCAGCAAAGGTGTTAGAAGAGGGTCATGGGTGTAGTTTAGACCACGACTCAACTGGTGAAACACTGCCATTTGTAACCCTGGATGATAGCCATGAGCAGCAAAGcgAGGATTCAGGCATTAATGTCTCACACAGCAGTTCACCAATAAACGAGGTGGATGAGGGTGTTGTCTCCACCCCTAGTAACACAAGAATAGATGAAATTGGGAAGAAAGCACAAGACCTTATAGAGAGGATCAACCAGAGCCGGGCAATGGACCAGAAACTCATGAACAGCTTTGAGGAGAAGCTAATGAAGAAGgTGAGTGAGATGTGCCAGCAGGTGAAGGAGCAGATGTTTGAGTATTATGAGAAACACAGCCGAGGGATGGAGATAAAGCTCACTGAGCTCACAGAAGTGTTGGAGCGCAGCAGTCAGCTCAGCATGGAGCTCCAGGGAGCCAGCCATACACTGGCAGCCATTAACAAAGGTCTGCAGCAAACCCCGGGCCAGTAgatacaaatcacacacacacaaacattgtaGTGAATACAATACTTCCATAGCACCAGACATGTGACAGCCAAAACAAAGTAGTTGAATTTGTTGATGTAATAGAAATACCTCATTATAAAGGCAGGGTGACTGTTTGTACTTGTTTCATACTTGCATGATTCCCACTCAGTGGTAGCAAGATGCGAATAATTTCCCATCATCCAACTTACAAAGAGTGTAGTATGTGATACTGTTTAAAGAGGGAGGAAGAATAGCAGGAACGTTGAACTGTATTAAAAGAATGAATGTAAAATTGAATTCAAGAGACTCCATCAGTGGAGCAACAGAAagattacatttaaaacaaacatgttCTTCAGACAGTGCTATAAGGAAGACTCAGAAGATGTATTAGTCCACCTTGTGTTTTGAa
>XM_034310174.1
GAGAGGCGTCTCCCTGAACTGGTGCTTCTTTTCACCTAGGCATCTGTTTACTCAGCTAATCCGTCTAAATGCGGTACTTGCCTCTGCTTGCCTGTGCGGATGTTCCAAGTGTGTCTACGTGGGTTTCCTTCTCCGGTTTCtatcccacttcccaaaaatatGCAGGCCATGGCGCACCACTTCTTTGGACATCCTGGTTCTGCTACATTTCACTCAACACCTAAAGCCACTCATCACCGTGTGTCAGCAAAGGTGTTAGAAGAGGGTCATGGGTGTAGTTTAGACCACGACTCAACTGGTGAAACACTGCCATTTGTAACCCTGGATGATAGCCATGAGCAGCAAAGcgAGGATTCAGGCATTAATGTCTCACACAGCAGTTCACCAATAAACGAGGTGGATGAGGGTGTTGTCTCCACCCCTAGTAACACAAGAATAGATGAAATTGGGAAGAAAGCACAAGACCTTATAGAGAGGATCAACCAGAGCCGGGCAATGGACCAGAAACTCATGAACAGCTTTGAGGAGAAGCTAATGAAGAAGgTGAGTGAGATGTGCCAGCAGGTGAAGGAGCAGATGTTTGAGTATTATGAGAAACACAGCCGAGGGATGGAGATAAAGCTCACTGAGCTCACAGAAGTGTTGGAGCGCAGCAGTCAGCTCAGCATGGAGCTCCAGGGAGCCAGCCATACACTGGCAGCCATTAACAAAGGTCTGCAGCAAACCCCGGGCCAGTAgatacaaatcacacacacacaaacattgtaGTGAATACAATACTTCCATAGCACCAGACATGTGACAGCCAAAACAAAGTAGTTGAATTTGTTGATGTAATAGAAATACCTCATTATAAAGGCAGGGTGACTGTTTGTACTTGTTTCATACTTGCATGATTCCCACTCAGTGGTAGCAAGATGCGAATAATTTCCCATCATCCAACTTACAAAGAGTGTAGTATGTGATACTGTTTAAAGAGGGAGGAAGAATAGCAGGAACGTTGAACTGTATTAAAAGAATGAATGTAAAATTGAATTCAAGAGACTCCATCAGTGGAGCAACAGAAagattacatttaaaacaaacatgttCTTCAGACAGTGCTATAAGGAAGACTCAGAAGATGTATTAGTCCACCTTGTGTTTTGAa

Function

NR:

description
synaptonemal complex central element protein 2-like

GO: NA

KEGG:

id description
K19535 SYCE2; synaptonemal complex central element protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917087.2 False 1126 mRNA 0.44 5 13088853 13094678
XM_034310170.1 False 1035 mRNA 0.44 5 13088718 13094679
XM_034310171.1 False 1091 mRNA 0.44 6 13083134 13094680
XM_034310172.1 True 1229 mRNA 0.44 6 13083066 13094679
XM_034310173.1 False 1193 mRNA 0.45 6 13083079 13094679
XM_034310174.1 False 1150 mRNA 0.45 6 13083081 13094679

Neighbor

gene id symbol gene type direction distance location
farsa farsa,LOC106601350 coding upstream 4393 13065751 ~ 13078673 (+)
ptger1b LOC108257984 coding upstream 40760 13028820 ~ 13042306 (+)
si:ch211-194b1.1 LOC108256185,LOC108236112,LOC103393718,LOC105929962 coding upstream 119292 12939770 ~ 12963774 (+)
pglyrp6 pglyrp2 coding upstream 148044 12930220 ~ 12935022 (+)
ddx5 ddx5,LOC108257112,LOC108432077,LOC107583258,LOC103024726,LOC107723600,LOC107602339,LOC105013158,LOC107748799,LOC107672127 coding upstream 154314 12922324 ~ 12928752 (+)
LOC113528074 LOC108256459 coding downstream 15353 13110033 ~ 13142377 (+)
LOC113528311 rgl3,LOC108432062,LOC107653475,LOC107718589,LOC107563227 coding downstream 52623 13147303 ~ 13169715 (+)
plppr2a plppr2a,LOC108274416,LOC108440982,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668 coding downstream 179944 13274624 ~ 13313578 (+)
tlcd4b tmem56b,LOC108258030,LOC108440983,LOC102303032,LOC107376175,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 coding downstream 250314 13344994 ~ 13363702 (+)
cnn1b cnn1,cnn1b,LOC107715638,LOC107718633 coding downstream 278556 13373236 ~ 13390147 (+)
G210384 NA non-coding upstream 37233 13044990 ~ 13045833 (+)
G210209 NA non-coding upstream 261782 12821076 ~ 12821284 (+)
G210160 NA non-coding upstream 302930 12779249 ~ 12780136 (+)
G210086 NA non-coding upstream 534563 12546433 ~ 12548503 (+)
G209945 NA non-coding upstream 702080 12378946 ~ 12380986 (+)
G210532 NA non-coding downstream 271004 13365684 ~ 13365893 (+)
G210655 NA non-coding downstream 365299 13459979 ~ 13460490 (+)
G210698 NA non-coding downstream 567494 13662174 ~ 13663501 (+)
G210694 LOC108276282 non-coding downstream 570836 13665516 ~ 13669551 (+)
G210719 NA non-coding downstream 600810 13695490 ~ 13695799 (+)
ndufb10 ndufb10 other upstream 708694 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 892996 12158703 ~ 12190070 (+)
LOC113528416 LOC108275780 other upstream 942695 12135269 ~ 12140371 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other upstream 997008 12049407 ~ 12086058 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 1505243 11567119 ~ 11577823 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 340701 13435381 ~ 13445686 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other downstream 369405 13464085 ~ 13493942 (+)
socs3a socs3 other downstream 1524524 14619204 ~ 14621788 (+)
LOC117598752 NA other downstream 1893406 14988086 ~ 14991450 (+)
G211913 NA other downstream 2823537 15918217 ~ 15968759 (+)

Expression


Co-expression Network