LOC113528505 (LOC108277132)


Basic Information

Item Value
gene id LOC113528505
gene name LOC108277132
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15578454 ~ 15581065 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917092.2
GTAAACATGTGGGCCAGCTGCAGGGATGCTGACAGTCCAGCCCTGTTTATTAGTGAGAGTGTTGAGGAGGCACAGGACTTGGCTCTGTTGATCTGCACGGAAATGAATCATCACAGAAATGAAGTGCCATGTGAACACGAGCACGGGGGCTGCTGGTCTATATAAAGGCTGAATGACGGCGCACAGGAGCACTTTAGAGCTTACTGAAACGTGGTTAGGAGTCGTTGCTCCTCTGTAGACATGGGGAAGTTTGATGAGCGTGCTTTGCTCCTGCTTGCCGTTTGCGTGCTCGCTGTTCACACTCCAGCAGAAGCCTGGTACAAACAAGCAGCCGGACCCACTTACTACTCCGTCGGTAGAGCCTCAGGGCTGCTGGCAGGAATCCGGAGATCAGCCATCAGGAGAGACGAAGCAGACACACGGGACAGCGGAGAAGCCACCGGAAATCACGCAGTCTTACACACCAACTCCCGCAACTTCGCTCTGAAGAACATGCCTATTTGTGTGAAGGACGTTTTGCCGGAGCTGCAAAGTTGTGAGCTGATGCAGGACTCCATGTTCCGGTGCGAGGCGGCAGTCATTATCACCCTGGACTCCAGTAACTGCGTGAACGCATGAGGATCACCTCTGTTTCCGGACTGAACAAAATATAAGCACAAACAAAATACTTTAAGTGTGTGTCCAGTCAGTAGGCTATACAGTTTGTGAGTGCAGTATGAGACCGGGTGCCTTACTGTATTAGTCTGGGAGATCACacaggaaaacaggaaaacCATATGAAACAATATGAAGCCTATAGAGCATATCTAAGAACAGCACTTTCCCCCATTGTGGCAGtcatttattgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917092.2 True 864 mRNA 0.50 2 15578454 15581065

Neighbor

gene id symbol gene type direction distance location
LOC113528654 NA coding downstream 106542 15471777 ~ 15471912 (-)
si:ch73-374l24.1 si:ch73-374l24.1,LOC108259727,LOC108437159,LOC102304961,LOC107556610,LOC102791879 coding downstream 375270 15053544 ~ 15203184 (-)
cacng5b cacng5b,LOC108275568,LOC108437158,LOC107729207,LOC107556612,LOC107664435,LOC107698772 coding downstream 526811 15038370 ~ 15051643 (-)
LOC113528182 LOC108274645,LOC108274429 coding downstream 605870 14955058 ~ 14972584 (-)
LOC113528557 LOC108260380 coding downstream 630920 14941903 ~ 14947534 (-)
LOC113528397 stk31 coding upstream 1539 15582604 ~ 15595204 (-)
LOC113528053 LOC108277091,LOC108277128,LOC108277120,LOC108275034 coding upstream 26379 15607444 ~ 15617384 (-)
LOC113528022 rasd1,LOC108274801,LOC103040487,LOC108437878,LOC103468867,LOC106942351,LOC108241306,LOC103140985,LOC106518663 coding upstream 644586 16225651 ~ 16227442 (-)
sox8a sox8 coding upstream 745820 16326885 ~ 16330539 (-)
LOC113528411 adap1,LOC108276756,LOC106601846,LOC103363436 coding upstream 920056 16501121 ~ 16537254 (-)
G211774 NA non-coding downstream 30392 15547827 ~ 15548062 (-)
G211773 NA non-coding downstream 30695 15547555 ~ 15547759 (-)
G211751 NA non-coding downstream 68171 15509697 ~ 15510283 (-)
G211737 NA non-coding downstream 105111 15471772 ~ 15473343 (-)
LOC113528255 NA non-coding downstream 105637 15471944 ~ 15472817 (-)
G211800 rnf213 non-coding upstream 42642 15623707 ~ 15624357 (-)
G211803 NA non-coding upstream 45511 15626576 ~ 15627023 (-)
G211805 rnf213 non-coding upstream 47668 15628733 ~ 15629969 (-)
G211806 rnf213 non-coding upstream 49707 15630772 ~ 15631372 (-)
G211807 rnf213,LOC101062534,LOC107701915,LOC107556605 non-coding upstream 52615 15633680 ~ 15633897 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 592342 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 888322 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 1057479 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 1548813 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 1571942 14004169 ~ 14006512 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 570010 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 991480 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 1180167 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 1711708 17292773 ~ 17319719 (-)
G212700 NA other upstream 1805146 17386211 ~ 17425901 (-)

Expression


Co-expression Network