gaa (gaa,LOC106601771)


Basic Information

Item Value
gene id gaa
gene name gaa,LOC106601771
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12033886 ~ 12045504 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917101.2
CTCAAGCGGCTGCGATTCGGCCAGAATCTGCCATCATGTGCAAGATGTAACGTCAAAGTAACAGTTCTGCTCAGGCTTTTCGTCATGATTTCTCTCATGCACACTTTGtCATGGTAGATTCCTAGCAGATCACTTGAGTTACACATGTCTGAGAAGCCTGAAGATCCTGTTTGAATGACCATGAATCCGTGTTGGCTTCCACATTCAGCTTATGTTCTTTTAACTCTGGCCCTATCATGCATATTGATTAGCCAGTTGTATCTTCACCAAGCATCAGTTGTAAGAGTGCCATCATCTCCAGAGTTAACAACAATTAAAGTGCCCAAGACCAGAGATCTCTTCAAGAACACCACCAGGAACTtttcaaataatataaattcaAGTGAATTACCAAACCACTCCACTGTTGCTGGAAGGGACTGCGGTCTTCCCGTGGAGAAGCGGTTTGATTGTGCCCGTGATCGAGCCGTCACTCGGGCGGAGTGTGAGGAACGAGGCTGTTGCTACTTGCCCCTACCCCAGTCTGAGTACAGTGGGCCGCCATGGTGCTTCTACCCTGCATCATATCCTGGCTACAGAATGGGACCGCTTTCTCCCACACCTAGGGGTCAGTCAGCCACACTTACTCGCGTCACTCCTTCTTACCTGCCCCGAGACATCTCCACTCTGCAGCTAGAAGTGATGGAGGAGGAAGCGGGCCGCTTACACCTTACTctgAAGGATCCCTCGTCAACTCGATATGAAGTTCCCTTTGTTGCAGTGCCATCCAGTACGTACAGACGTACAGACACGCAAGCTTTCCTCTATGATGTGGAATTTCAGCCAGACCCGTTCGGCTTTGTGGTTCGTCGCAGATCCAATGGCCGAGTGCTACTGAACACCACCGTAGCACCGCTCCTGTTTGCAGACCAGTACCTCCAGCTCTCCACCTCTCTGGCATCTACTTTCATCTCTGGATTTGGcgagcactacacacacctgaCTCTGGATCTCAACTGGACCTCTGTCACTCTGTGGAACAGGGATATGGCACCACATAGCGATGCCAACCTTTACGGCTCCCATCCATTCTGCTTAGTTCAGGAGGGTGATGGTCAGGCTCATGGCATCTTCCTTCTTAACAGCAATGCCATGGAAGTAGCACTGCAGCCCATGCCAGCGCTGACTTGGGTGACCATCGGAGGAATTCTGGACATGTACATCTTCTTAGGCCCTGATCCACAGAGCGTAGTCCGACAGTACCATGAGGTTATTGGTTATCCCATGATGCCACCTTATTGGTCTTTGGGGTTCCACCTCTGCCGATGGGGCTACACCTCCACTAATGTGACCAGAGCTGTGGTGCAGCGGATGCAGCAAGCCCAGTTTCCTCTCGACGTGCAGTGGAATGATCTTGATTATGCTGACAAGAAGCGAGTCTTCACCTTTGACCCACAGAGGTTTGGAGACTTGCCTGAGATGGTGCAAGAGTTCCATGAGCAGGGACTGAAGTATGTGCTCATTTTGGATCCAGGCATCAGTAGTACGAGTCCTCCAGGTTCATACAAACCTTTCGATGATGGAGAGCAGCGGGGTGTTTTCATCAAAAACCTGACAGGACAAACACTCATTGGGAAGgtatGGCCTGGTCCAACAGCATTCCCGGACTTCACTAATCCAGATGCAGTGAGCTGGTGGGAAGAGTGCATCAGAGACTTTCATGCCAATGTGTCACTTGATGGCCTGTGGATAGATATGAATGAACCTGCTAGTTTTGTTCACGGCTCAGTGCATGGATGCCCAGCCACTGAACTAGAGAATCCACCTTATACTccagATGTTATAGGAGGTCAGTTAAACTCAGGCACCCTGTGTATGTCCAGTCAGCAAGCGTTGTCTTCCCATTACAACCTGCACAACCTGTATGGGCTGACTGAAGCTATCGCCACTTACAGCGCGTTGCTGAAAGTGAGAGGCTCTCGGCCGTTCGTGCTGTCCCGCTCCTCTTTCCCAGGACTGGGCCGTTTCTCAGGGCACTGGACAGGAGATGTGCGTAGCGACTGGGAGCAACTGCGATACTCTATCCCCGCTGTGCTGCTGTTTGGGCTGTATGGAGTTCCTCTGGTCGGGGCAGATGTGTGTGGATTTGAAGGCGACACTAATGAGGAGCTGTGTGTGCGCTGGACTCAGCTGGGTGCCTTCTATCCATTCATGAGGAACCATAATGACAGACCTTATGCTCCCCAGGAGCCTTACGTTTTTGGACAGCAGGCCCAGACAGCCATGAGGAATGTGATGATGCTCAGATACTCTCTTCTGCCCTTCCTGTACACACTTTtccaccatgcacacacctcaGCCAGCACTGTAGCAAGACCCCTCTTTATGGAGTTCCCATCTGATCCAAACTGTCCGACGATAGATAGGCAGTTCCTGTGGGGGAGTTCTCTGCTCATTAGTCCAGTCCTAGAACAGGGAGTTGAGGATTTGGCAGCCTATCTCCCCCCTGCGATGTGGTACAGTCTGCACAATGGGCAACTTTACAACAGCAAGGGCCAGTACCTGCTCCTTCCAGCTACACTAGATACCATCAATGTCCATGTGAGAGGGGGCCATATTATTCCACAGCAGGTGCCTGCATTGACGACCTCAGCCTCACGCAGTAACCCCTTCCACCTGACGGTGGCGCTCTGCTCACAGGGCTGGGCCAAAGGAGAGCTGTTCTGGGATGATGGGGACAGCCTAGATACATTTGAGCAAGGAGATTACTCATATATTATCTTCACGGCAGGACAGTCACAGCTGGTGGGTGAGCCATTAAAACTGAATGGAGCTCTGGATGGTTTAGTTGTGGGAGAGGTTCGTGTGTTTGGAGTTCCAACGCCTCCTACAGGAGTGTGGGCTAATGGGAAACGAGTGAGggatttctcttacaccacagacaCCAAGGTTCTTACAGTGTCGAATCTGGCCCTGCTGATCTCAGAGACGTTCACAGTGCAGTGGAGTTTATGAAATTCCTGCTATTCTCTCTTTGCTGGATAATGGAATAACTATCAATGTGTCTTTTTAAATGATGGAAATGCCACATGTCACATGAAAATTGCACTGGGTCTATAGAGATTTTGCAGTCTGAAAAAAGGTTTTTATGTACTCAATAAATTTGACATACATTTTTACGGTGTGTATTCTATTTGACATTTTGAATCTTTCACAAAATACATTACCTTAAACCTGattaaaacagaataaagcTACAGTTCAAATTTG

Function

symbol description
gaa Enables alpha-glucosidase activity. Predicted to be involved in glycogen catabolic process and lysosome organization. Predicted to act upstream of or within carbohydrate metabolic process. Is expressed in several structures, including eye; heart; liver; muscle; and pleuroperitoneal region. Used to study glycogen storage disease II. Human ortholog(s) of this gene implicated in glycogen storage disease II. Orthologous to human GAA (alpha glucosidase).

NR:

description
PREDICTED: lysosomal alpha-glucosidase

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K12316 GAA; lysosomal alpha-glucosidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917101.2 True 3249 mRNA 0.49 20 12033886 12045504

Neighbor

gene id symbol gene type direction distance location
grin2ca grin2c,LOC100329743,LOC107658706,LOC107758122,LOC107559244 coding upstream 114223 11861586 ~ 11919663 (+)
rfx1a LOC108260824,LOC108432209 coding upstream 183550 11830043 ~ 11850336 (+)
s1pr5a s1pr5a,LOC108260797,LOC108432217 coding upstream 290813 11739620 ~ 11743073 (+)
si:dkeyp-69e1.8 LOC108278349 coding upstream 356425 11671706 ~ 11677461 (+)
hmgxb4a hmgxb4 coding upstream 362285 11662221 ~ 11671601 (+)
cbx4 cbx4,LOC108260285 coding downstream 70935 12116439 ~ 12122136 (+)
cbx8a cbx8,LOC108261002,LOC107085518 coding downstream 84087 12129591 ~ 12132297 (+)
narfl narfl,LOC106606697 coding downstream 219201 12264705 ~ 12272091 (+)
fahd1 fahd1 coding downstream 241716 12287220 ~ 12288452 (+)
LOC113528323 LOC108258986 coding downstream 295446 12340950 ~ 12356527 (+)
G209775 NA non-coding upstream 12754 12019863 ~ 12021132 (+)
LOC113528367 NA non-coding upstream 210976 11808261 ~ 11822910 (+)
G209410 NA non-coding upstream 324950 11708728 ~ 11708936 (+)
G209392 NA non-coding upstream 399405 11633912 ~ 11634481 (+)
G209390 NA non-coding upstream 415652 11618035 ~ 11618234 (+)
G209798 NA non-coding downstream 16065 12061569 ~ 12061782 (+)
G209863 NA non-coding downstream 87756 12133260 ~ 12133471 (+)
G209884 NA non-coding downstream 155734 12201238 ~ 12202277 (+)
G209886 NA non-coding downstream 162732 12208236 ~ 12208486 (+)
G209887 NA non-coding downstream 163382 12208886 ~ 12209124 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 456063 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 645866 11280080 ~ 11388020 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other upstream 1252427 10349402 ~ 10781459 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 2046113 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 2970473 9061563 ~ 9063413 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 3903 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 89765 12135269 ~ 12140371 (+)
arhgap17b LOC108279379,LOC108432202 other downstream 113199 12158703 ~ 12190070 (+)
ndufb10 ndufb10 other downstream 322062 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1389877 13435381 ~ 13445686 (+)

Expression


Co-expression Network