si:busm1-163l24.4 (LOC108277007)


Basic Information

Item Value
gene id si:busm1-163l24.4
gene name LOC108277007
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8201765 ~ 8203353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917127.2
CAGCCAATCACACAAAATATAACCAGGAGGCTTCCTTTTGTTGCTCTTTGACACAGACTGGTACTAACGTAAACAGCACATTATGAGCACATTGAATGATGATAAATGTGAAATGGCAGAGGTAGCTCGCAAGAACCAGGACCCTTTCAGCTGTCCTATCTGTTTGGACCCACTTGACAATCCGGTAACAATTCCATGTGGACATAACTACTGCATGGCTTGCATTGAGGATTACTGGAATGAGGACAAGCAATTGGAGTCCTACAGCTGTCCTGAGTGCAGGGAAACCTTCACACCGAGGCCTGCTCTTAACAAGAACACCATGTTTGCTGAGGTGGTAGAGCAATTTAAAAAGGTAAGACTACAGGATGCTTCACCCTGCAACCGTGGACCTGCAAACGTGGAATGTAGCATCTGCACTGAAAGAAAAAGGCAAGCTGTCAAATTCTGCCCAGACTGTGTCGAGTCATACTGCGAGGCTCATACAGTTAGGCATGAGAAAGCAAACTGTGGAGAGAAACACATTGTAGTAGTCATTAGCAGAGAGCCTCGAATGGATATCTGCCTCCGTCATAACGTCCCACTGGAGATATACTGTCGAACCGACCGGCAGTTAATCTGTTCTCTTTGCTTCGCTGAAAGCCATAGAGATCATGATGCGGTTTCAGTCGCGCCAATAAGCGCAGAAAGACGGGACCATAAAAGTTCCCGCATGGATACACAGCATGGGAACAGGCACACATCCCACAAGCATGGAAGGAGGAAACACAAAAGAAACAGGCATGGTAATGGACATGGGAGTAGACACAGAAGCAGCTCCAGAAAGACCTTGCATTTGAAAAACAGTCATGAAGTGAGTCATGAATGTCATGGGAGTAATATGATCAGGCATGGGCATGTTGTAGGAGATGGGCATATGAAGAGCAAACATAGGAGTAGACATGGAAGCTGGCACATGAGCAGCAGGCATGAGAGAAATCAACACTAATGTTAAAAAGCATTAAGATGTGGAGAATGGTGTGGAATATGGCATGATTATAGAAGGCCGTAAGGTCAGATATGAGGAATGGAGGAAGCACTCAATACTGCGATTCTTTATTTGAACCTGAGATACTTAAAACTTTCTTGCAAgtgaaaatgttaaattatttttgaattaatgcatttaaatgttacaagtattatttattaacaagtATTGAGGATTTCAAAATGTGCATCATGGCGAGTATTTCTCAACAAAAAGTTTATATTTCCATCTGATTTTGCATGAATTTGATCTTTTATATAATctacaatttttttatgtttctgtatctttatatttttgtaacattatGGATGCTGGCATCTTCAAATGACTTTCAAATCCTAATGAGTGCTCAATTTCATACTTACAATTATTAAGAAATCTTTCAGACTCTATCCACTCACTAAATCTGTTTAAGCAGTTAATTCTGATTACCTAAAAGTTAATAGTGCTTTGTACATAATTTATATGAAACTATTAGTTATGAAcatagagggaaaaaataatGGTTCCAGACAATGTAGAAtacagtgtgtaaatatataactGAGTGAAAACA

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917127.2 True 1589 mRNA 0.40 1 8201765 8203353

Neighbor

gene id symbol gene type direction distance location
rnd2 rnd2,LOC108273890,LOC108413538,LOC107708553,LOC107552458,LOC107754744,LOC107567027,LOC103142158 coding downstream 46491 8130367 ~ 8155274 (-)
rprml LOC108261071 coding downstream 215943 7984469 ~ 7985822 (-)
LOC113528501 cq072 coding downstream 233775 7961774 ~ 7967990 (-)
phb phb,LOC107661032 coding downstream 721509 7473512 ~ 7480256 (-)
znf652 znf652,LOC108258819,LOC106607259 coding downstream 733930 7446563 ~ 7467835 (-)
si:busm1-163l24.3 LOC108276929 coding upstream 707 8204060 ~ 8209776 (-)
atxn7l3 atxn7l3,LOC108276986,LOC107571925,LOC107660606,LOC107566928 coding upstream 22944 8226297 ~ 8236622 (-)
ubtf ubtf,LOC102797579,LOC107660581 coding upstream 34797 8238150 ~ 8248789 (-)
spop spop,LOC107754841,LOC100710366 coding upstream 363418 8566771 ~ 8660121 (-)
slc35b1 slc35b1,LOC107590797,LOC107684645 coding upstream 512971 8716324 ~ 8728598 (-)
G207650 NA non-coding downstream 987 8176358 ~ 8200778 (-)
G207653 mrc2 non-coding downstream 87191 8110658 ~ 8114574 (-)
G207571 NA non-coding downstream 164917 8033282 ~ 8036848 (-)
G207565 NA non-coding downstream 172316 8029206 ~ 8029449 (-)
G207540 NA non-coding downstream 253594 7943678 ~ 7948171 (-)
G207732 NA non-coding upstream 150357 8353710 ~ 8358074 (-)
G207793 LOC107737118,LOC107558774 non-coding upstream 228645 8431998 ~ 8432261 (-)
G207860 NA non-coding upstream 289462 8492815 ~ 8493041 (-)
G207895 NA non-coding upstream 331150 8534503 ~ 8534712 (-)
G208016 NA non-coding upstream 371282 8574635 ~ 8649363 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 496273 7559767 ~ 7705492 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other downstream 770653 7425717 ~ 7431112 (-)
G207231 spsb3 other downstream 879803 7318603 ~ 7321962 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other downstream 1475600 6646058 ~ 6726165 (-)
G206604 NA other downstream 2006769 6126910 ~ 6194996 (-)
slc4a1a LOC108279353 other upstream 46532 8249885 ~ 8267638 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other upstream 76414 8279767 ~ 8289808 (-)
LOC113528661 NA other upstream 81121 8284474 ~ 8284592 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other upstream 504601 8707954 ~ 8713318 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 909613 9112966 ~ 9142871 (-)

Expression


Co-expression Network