gna13b (LOC108278714,LOC108438014,LOC107721501,LOC107719992,LOC107654495,LOC107590387,LOC107688114,LOC107601276)


Basic Information

Item Value
gene id gna13b
gene name LOC108278714,LOC108438014,LOC107721501,LOC107719992,LOC107654495,LOC107590387,LOC107688114,LOC107601276
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18851456 ~ 18872146 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917128.2
gtgtgtgcgcgtgcgtagcgcgcgcgcgcgcgggAGCTTGGCTTAGCTCAGCTCGGCTTAACCCCTCCCTATTTGTATCGATGAAAGTTTGTGTTACAAAGATGGCGGATTTCCTGCCGTCCCGGTCCTTACTATCCGTCTGTTTCCCTAAATGTCTCCTGAACACCAGCGAGGCAGAGCAGCTGAGGATATCTAAAGAGATCGACAGATGTATTTCGAAAGACAAAACGTACGTGAAGCGGCTAGTGAAGATACTTTTGCTCGGCGCCGGCGAGAGCGGCAAGTCCACTTTCCTCAAGCAGATGCGCATCATACACGGGCAGGATTTCGACCAGCTCGCCAGAGAGGAGTTCAGAGCAACCATCTACAGTAACGTTATTAAAGGCATTCGTGTCCTGGTGGACGCACGGGAAAAGCTGCACATCCCATGGGGCGACGCATCAAATCAGAGACACGGCGAGGCACTGATGAGCTTCGACACGCGCTCGGCTCAGGGAATGGTGGAGCCCAAAGTGTTCCAGCAGTATCTGCCTGCAGTGCGTGCGCTCTGGGTTGACACCGGCATCCAGCACGCCTACGACCGCCGCCGCGAGTTCCAGCTgGGTGAATCGGTGAAATATTTCTTGGATAACTTGGAAAAACTTGCAATGCCGGACTATCTGCCGAGTCAGCAGGATATCTTACTTGCACGCAGACCCACCAAAGGCATCCACGAGTACGACTTTGAGATCAAGAATGTCCCGTTCAAGATGGTGGACGTGGGCGGCCAGCGCTCCGAGCGCCGCCGCTGGTTCGAGTGCTTCGAGAGCGTCACCTCCATCCTGTTCCTGGTATCGTCGAGCGAGTTCGACCAGGTGCTGATGGAGGACCGTCAGACCAACCGGCTCACAGAGTCTCTCAACATTTTCGGCACCATCGTCAACAACCGCGTGTTCAGCAACGTCTCCATCATCCTGTTCCTGAACAAGACCGACCTGCTGGAGGAGAAAGTCAAGACCGTGGCCATCAAGGACTTCTTCCCCGAGTATGAAGGCGATCCGCACAGCTTGGAGGACGTGCAGAAGTTCCTTGTGACGTGCTTCCGCAACCAGCGCCGCGAGCAGCAGAACAAGCCGCTCTACCACCACTTCACCACGGCCATCAACACTGAGAACATTCGCCTTGTCTTCCGGGACGTCAAGGACACCATCTTACACGACAATCTCAAGCAGCTCATGCTGCAGTGATCTGAACTCTTCCCTCAGCTTCCACTGCTCGTGTCCAAGCCTGGACCACTAAACCTGActttgggggtgggggggagG

Function

NR:

description
PREDICTED: guanine nucleotide-binding protein subunit alpha-13

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
K04639 GNA13; guanine nucleotide-binding protein subunit alpha-13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917128.2 True 1304 mRNA 0.56 4 18851456 18872146

Neighbor

gene id symbol gene type direction distance location
aldh3b1 aldh3b1,LOC108258475,LOC108444046,LOC107698763 coding downstream 7723 18836193 ~ 18843733 (-)
carm1 carm1,LOC107689626 coding downstream 33147 18802031 ~ 18818309 (-)
timm29 c2h19orf52 coding downstream 58497 18790181 ~ 18792959 (-)
slc25a23b slc25a23b,LOC108274688,LOC107601238,LOC107698653,LOC108444036,LOC107724434,LOC107689624 coding downstream 94780 18735653 ~ 18756676 (-)
znf207a znf207,LOC108278632,LOC108444040 coding downstream 131115 18711080 ~ 18720341 (-)
cog1 cog1 coding upstream 30517 18902663 ~ 18915773 (-)
rogdi rogdi,LOC107719995,LOC105899978,LOC107688116 coding upstream 49990 18922136 ~ 18936509 (-)
scpep1 scpep1,LOC107654482,LOC107601266,LOC107720074 coding upstream 84903 18957049 ~ 18968781 (-)
trnat-cgu_6 NA coding upstream 204123 19076269 ~ 19076340 (-)
crlf3 crlf3,LOC107688102,LOC107654479 coding upstream 235040 19107186 ~ 19126331 (-)
G213407 NA non-coding downstream 2309 18792435 ~ 18849147 (-)
LOC117599003 NA non-coding downstream 775069 18070785 ~ 18076387 (-)
G213028 NA non-coding downstream 808177 18041404 ~ 18043279 (-)
G212891 NA non-coding downstream 951186 17900070 ~ 17900270 (-)
G212871 NA non-coding downstream 965214 17886012 ~ 17886242 (-)
G213549 NA non-coding upstream 151612 19023758 ~ 19072985 (-)
G213716 tnrc6a non-coding upstream 545038 19417184 ~ 19422415 (-)
G213879 NA non-coding upstream 791191 19663337 ~ 19663762 (-)
G214159 NA non-coding upstream 1148406 20020552 ~ 20056144 (-)
G214325 NA non-coding upstream 1563906 20436052 ~ 20438834 (-)
si:dkey-204f11.64 LOC108274053 other downstream 23722 18823471 ~ 18827734 (-)
LOC117598999 NA other downstream 474093 18375684 ~ 18377363 (-)
mettl23 mettl23 other downstream 797240 18050735 ~ 18054216 (-)
tsen54 tsen54 other downstream 978875 17811613 ~ 17872581 (-)
G212750 LOC100136012,LOC107575789 other downstream 1176172 17674827 ~ 17675284 (-)
rbbp6 rbbp6 other upstream 557071 19429217 ~ 19448559 (-)
lyar lyar other upstream 1068208 19940354 ~ 19984149 (-)
slc2a9l2 slc2a9 other upstream 1167641 20039787 ~ 20138213 (-)
hs3st1 hs3st1 other upstream 1333193 20205339 ~ 20213629 (-)
spry1 spry1 other upstream 2027911 20900057 ~ 20905271 (-)

Expression


Co-expression Network