LOC113528532 (tbc1d10b,LOC107737756,LOC107554125,LOC107582992)


Basic Information

Item Value
gene id LOC113528532
gene name tbc1d10b,LOC107737756,LOC107554125,LOC107582992
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3247701 ~ 3271970 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917135.2
CTCGCGCAGGAGGAGTCGAGTTAGCGCAACAACCTGTGCGCGGCTAGCTCCACACCAAACGGATTTATTCATTCTGGGAGTGGAACTGatcaaatatatattaatataaacataaataaaagcGGAGTCCACTTTCCTATCAACGGAGACTTCTATGCgacatttagttatttattttttattgtctaAAGCAAGTGGAACTAGAGAATTTACACCGATGCTAGCCGGAACCCATACAACATTAACCGCTTGCgaaagctaagctaagctaagctaacacGAAATTTACAACCTGACCGGTCAACGGAGTGAAGTTTTCCTCTTTTAATTCTGCACgacattagtttttttttgccGTGCCGTATTGTCACAGATTCTCACCGAAATCGGAAAAAAGGGCGCCTCCGCAAACGAAGCTGTGGAGGGGGAAAAGCGGATAACATCCTCACCGGGCGGACGTCGCGCATCCTGCCGGCTTGCGGaGAGGAGCGATGGCCGAGGTCTCAGCCCTCACCCCTTCTCCTCCGGCGATGGCGGATCAGTCAgtagctcctcctcctccctcctctgctccctccctccctgcAGAGTCACCTAAACCCGTCGCTGTCCCAAAATCCGCTTTGTATGGAGACCGAGCTGTAATGGCTGCCGCTGCATCAGCACCGCCACTTAAAGAGACCTCTGTCCCTTTCTCGCACTCCGGGAATGCACTGTCTGAGAATCCTCCTCCTATTACAGCTGCTTCTGAAAGCGATTGTCCTCCCAACCGAGGAACAGAAGGTTTCCCCACAATGTCTGAGCCTTTAACGCAGCAAAACATCTCCCCAGAACCACCGGGAGGAGCGGCAGATCCTGAAGCGCTGCCGTTTCCAGCACAAAATCCCTCAACGCAACTCAATCTGACCTCAAACTCCACATCCTCGTCACACACGCCTCCTCGGTCTCCTCCGTCTCTCGTCCCCTACGTCTCAGATCCGTTGTCAGACCTGAAATCCGATCTTCCCTCTCTCATGGTTCACGATTCGTCATTGCCGTATGTAGTACCACCCCCTGCTCAATCAGGACCCGCCCTAGACACACTGAGCTATCTGGAGTCAGCGAGCATGATGTCAGGAACGCTGGAGTCTCTGTCGGGCATCGGCGACGATGGAAGCTCGCTCGGGTCGGACTCGGAGCTCAACGGCCCGGTTCTGAGACGCACAGATAAATACGGCTTCCTCGGAGGAGCGCAGTACAGCGAGAGCAATGTGGTGGAGGTCAGTGTGGAGGTGGCACGGCACCGAGAGATGAAGTGGTTGGACATGTTCAAAAACTGGGACAAGTGGATCTCTCGCCGCTTCCCCAAGgtaaagCTGCGCTGTAGGAAGGGAATCCCGTCGTCTCTGAGAGCTCGAGCCTGGCAGCTTCTCTCCAACAGCGAGGAGCTTCTGATGGCAAACGCCGGCAAGTTCGAGGAACTGGAGAGAGAGCCGGGAGATCCGAAGTGGCTGGATATCATCGAGAAGGACTTACACAGGCAGTTTCCCTTCCACGAGATGTTCGCTGCTCGAGGAGGCCACGGtcagcAGGATCTGTACCGTATACTGAAGGCTTATACCATCTATCGGCCTGATGAAGGCTACTGTCAAGCTCAGGCTCCTGTGGCTGCGGTCCTGCTGATGCACATGCCTGCAGAGcaaGCGTTTTGGTGTCTGGTGCAGATTTGTGAGAAATACCTGCCTGGCTACTACAGCGCTGGACTGGAAGCAATCCAGCTTGACGGGGAGattttcttctctctgctgAGGCGTGTGTGCCCCATGGCCTACCGCCATCTGAAGAAGTTTAAGATTGACCCCATCCTGTACATGACCGAGTGGTTCATGTGCATCTTCTCCCGCACGCTACCGTGGTCCTGCGTCCTCCGCGTCTGGGACATGTTCTTCTGCGAAGGGGTGAAGATCGTGTTCCGTGTGGGTTTGGTCTTACTGAAGCAGATGCTGGGTTCTGTGGATAAACTGCGGGAGCTGCAGGGAATGTACGAGACCATGGAGCGCCTGAGGAACATCTCACCAGACAGCATCAGAGAGGAAATACTGGTTCACGAGGTTACTGTTCTCCCTGTGACTGAGGCTTTGATCGAGAGGGAGTGCGCTGTCCAGGTGAAGAAGTGGCGTGAGTCTCGTGGTGCCCTAACGCACCAGCCGGGCCGCAGGCTTCACGGCACACGAGACATCCACGAGCAGAAGCGCCGCGCCGCCGCCATCAGCTCTGGGGGAAGTCTGTCCTTCCTGGGCAGCTCCATGTCCCCTCCGCCACCCGGCCCCCTGCGCTCCTCTTCCAGCCTCCTCTCTCTTCCCGGCTTCCGGAAATCCAAAAATCCATTCTCTCACGGTAAAAAGAGCTCTTTTTCTGGGCCTTTCGACCCGGAAACCCAGGTGTTTGGGGGCGGGACTCCTATAATGATAACAGCCTCATCCGGGCCACCACGCCCTCCCATTTCTTCAGCGGCCCCGCCCCCTGGAGGCGCAGGAGGGCACAGGCCTAGTCCTTTAGCAACAAAACCCCCAACTGTACCAAAATCTCCAGTGTCAAATTCTGAATCAACACCAGAACCAACATCAGCGCCAAAATCCAAACCAGAACCAATATCGGTGCCGAAATCTGAACCAGAACCAACATCAGCGCAGAAAACAGAACCAGAACCTGCACCAGTATCAAACTCTGAGCCAGAATCTGGACCACAACCCCCATCAGAGCCAGCATCAGAGCCAAAATCCAGCAAGGAATCTGCACATCCTCCAATCCCAAACCAGCTCCAGCCCCCTAGAGTAGTCTCGGAGCAAGTTACACCAACAATCCCGTCTCCCACGGCCAACAACATGCCTCTGCCTCCCTGCGAGGACGAgggcaagaagaagaaaaagagcaaggaggagaagaagaaagggaaggaggaggagaagcagaaggcACGAGAGAAGAAGGAACGCGAAAAGGCGGAGAAGGAGAAAgcgaagaaggagaaggagagggccgagaagaagaaggagaaagggGGCAAAAAGAAGGACAAAGCCGCAAGCGCTGAGGCGGAGGAGAAGAACGGAGCCGCGGCGGCGAAAAACGTGGCCTAGTTTTCGGGACAAAAGAGGCGAATAGAGCACAAAGGAAGGGATGTTTTTCGTCTTAAAGAGAACTGAATTATGTTTTGTGGCTCTGAATCCTTTCTCATTTACAGTCACATCCATTAGAAGagatattaaacacacacacacacagtcagtctGTAAATAGATCAGTAAGTCATTATTTAGTAAGTCATCCAACCATAAAACAGTCATCCGATCCCTCTACATCAGGCAGTGACCCTTAATAGAGATTGTCCTTGTCGTAGACTAAACAAGGAGCCCGTATTTATTAACATGTTGTCTGTTAGCGTGTGCTTGTGCGTGTTTACATGtttgtgtagtagtgtagtgtcGCTGTCCGGTGTTTCTGACTTGACCTGTAGGAGGCGTGCTTTCTTTCATCCTTCAcgatgaaatgaaaagaaaaaaaagtgaatgatGTCTGGTTTAGCCGCTAGAGGGACCGGAAGCGCATACTGAACTGAAACTCTGAGGTTTGTTTGGTACTGTGGTCAGAATAGCATGACTTCCTACCTGACTAACACTCTTTGGCCATCTTCTTAATCTTAATATCTTAGGAGTCATGTTTTCTCGCTCTATTTCAACTATCTGATGGTCTTTGTATGTCTCTCTAAGCTTTGTAGATGGGACTaaggctgggcgatatgacaaaaagtTTCATATCACAATATACAAACTACCAGCAAAAATCTGTGGAAAAAGCCTTTTGGTGATACTTTTATCGAAtgtctacaaaataaaaataataatacaaaaataaattgcttAAAACTGATAAAGAGGAGGGTGACATGATggttgctgcttcacagctccagttCCAGTGTCTCACTTTCACTCCTGAGCTCGGATGTAGAGTTTTACGTGTTCTTGACATGTGCGTTTCCTCcgacctcctaaaaacatgctgatGCACAAAAATTGACCTTAGGTTTGAGTGTGTGCTCGCGTGGTGCCctgagtgtattcctgcctcacgtccagtgttcctgggataggatcCTGATCCACTGTGACttggaccaggataaagtgcttacttaAGATAAacgagaaaggaaaaaaaaaaatcagtaatagtattttacaattttaaagactaagtacaaaatgttaacaggaaaaaaatttgCTTCCATTTAGagtaaatattgtttaaaaaaattttgaaaacaaaatcaCCATCACAATgttatctcagaaaagtgtattgtgaaataatttatCAGAATATTGACATTATATTGTCACATCACTCAGCCCTAGACTCTGTTATATTTGTAGTCTCTcggtcacacttttttttttaaatctcttgctcgtttttatatatatttctattgtCCCTGtgcttcctttctctctctctctctagctctcgaTTGCTCTCTCCTCTCCATGACCCTCTTGTCTGTTTGGCTCTAATTAACCCTGATGATATTTTCCACCCTGTTTAAGCGTGAACTGGAATCTCGGTATTACCCGGCAGTCGGCAGAGTAAACTGAAAAAGCATAATGGTGCAACATGACTGCAATATCTTAACGTATAGGGGAGAATTAAATGTCTGGACTTAACTCGATGTTGGTTAAACCTGCTTGGACTTTGACCTCAGACTCCTATTTATTTGCTTGTCGATGAAGGAATTAGTCTGTTTGCACTGAAccctctttatttttattttgtttttgttttttttgtccttaaaAGCACCACTAATATTTGATTTGCGTTGTTGCGTCTTTCTGATGTTAATGAATAATGATGTTCAGTAGCATTAACATCTGAGCTCATAACCTTTAGGGCTCGATTGCATTTGTCGATGTACAGTTTGTTAATTTAACCAGATGAAcaattatattatgtattattccTGTTCTTTATCGTATTTTAGattgtattattgttattttttctatGCAAGAAACCAGAGGCCTGCGTGACTGGAAGTGTAGCGGCTTTTAGAGGAAATTGAGGATGTATTTTAAAGTCATCATTTCTTAGTTTTTTGgttgttgtgggttttttttttttt

Function

symbol description
tbc1d10b Orthologous to human TBC1D10B (TBC1 domain family member 10B).

GO: NA

KEGG:

id description
K19944 TBC1D10; TBC1 domain family member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917135.2 True 5167 mRNA 0.48 10 3247701 3271970

Neighbor

gene id symbol gene type direction distance location
cd2bp2 cd2bp2,LOC107554127 coding downstream 28774 3214486 ~ 3218927 (-)
prr14 NA coding downstream 33766 3200147 ~ 3213935 (-)
rusf1 c2h16orf58,cunh16orf58,LOC102793205,LOC107577286 coding downstream 56684 3182985 ~ 3191017 (-)
rpl3 LOC100304518,LOC103392522,LOC108434904,LOC103374755 coding downstream 88438 3154981 ~ 3159263 (-)
abcc1 abcc1,LOC107654509 coding upstream 81195 3353165 ~ 3396356 (-)
gspt1l gspt1l,LOC100304847,LOC108438004,LOC107721494,LOC107654506,LOC106529451,LOC104930119 coding upstream 144429 3416399 ~ 3435123 (-)
pdxdc1 pdxdc1 coding upstream 165589 3437559 ~ 3467406 (-)
si:dkeyp-72e1.9 LOC108255663 coding upstream 230065 3502035 ~ 3525105 (-)
csnk1da csnk1d,LOC108259482,LOC103024472,LOC107601268,LOC107590392,LOC107688108,LOC107654491,LOC108435268,LOC107566590 coding upstream 315980 3587950 ~ 3623087 (-)
G204664 NA non-coding downstream 73424 3171262 ~ 3174277 (-)
G204524 NA non-coding downstream 214473 3028815 ~ 3033228 (-)
G204518 NA non-coding downstream 276832 2965883 ~ 2970869 (-)
LOC117598767 NA non-coding downstream 647349 2599709 ~ 2600352 (-)
G204317 NA non-coding downstream 706176 2541126 ~ 2541525 (-)
G205038 NA non-coding upstream 329032 3601002 ~ 3602239 (-)
G205030 NA non-coding upstream 345201 3617171 ~ 3620119 (-)
G205040 dus1l,LOC102781131 non-coding upstream 358724 3630694 ~ 3631383 (-)
G205063 NA non-coding upstream 432313 3704283 ~ 3738959 (-)
G205145 NA non-coding upstream 676879 3948849 ~ 3957710 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other downstream 169683 3073977 ~ 3078018 (-)
si:dkey-283b1.6 NA other downstream 208049 3034246 ~ 3039652 (-)
LOC113528062 LOC108276032,LOC108276106 other downstream 709590 2433149 ~ 2538111 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other downstream 902789 2331676 ~ 2344912 (-)
ifi35 ifi35 other downstream 1052161 2112445 ~ 2195540 (-)
nde1 nde1 other upstream 110861 3382831 ~ 3413767 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other upstream 496885 3768855 ~ 3865849 (-)
G205173 gfap,LOC103392664 other upstream 768511 4040481 ~ 4044575 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other upstream 820943 4092913 ~ 4117643 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 1450447 4722417 ~ 4734902 (-)

Expression


Co-expression Network