nlk1 (nlk1,nlk,LOC108260705,LOC108410603,LOC103027970,LOC106583944,LOC104935892,LOC107678874)


Basic Information

Item Value
gene id nlk1
gene name nlk1,nlk,LOC108260705,LOC108410603,LOC103027970,LOC106583944,LOC104935892,LOC107678874
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8783399 ~ 8793415 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917148.2
ACACCGGTAGTGCTACCCTCCCCCATTTTTCACTACGTATCCATCCCCcaactcctcctccttctccatcCTGCCACTGTTTCCAACAGCTGATTGCAGATAAAGAGAAAGCCACAGAAAGCTTGGAgtccaccaaaaaaaaacaggagttGAGGGGGAAACAACACAACGATGGAGGACTACAACGACCCACACGCATCCAAAATAATGCTTGTTTTGGTCATTTAAGGTGGGACGCCGCGGCGCTATGAGCCGGCTTTCACAGCAGCGGATTCGCTAAGGCTAACTTTACAAACATCAGTAGATAAGAAGCGTAGTCAGTTTACGTTCTCTTTATTAGCGCCGAGACGTTTTAACATCTAGATATAGCTGTTTATAATGGCGTGAATTTGCACGTATTTATACACAACATAACAACACACTTAAGTCTTGTAACGTAACTGTTTTAATTAGCCGGTTAACCAAGCTGAGCTAAGGTTAGCTAGCAAACAAAGATGATGAGCTAGAATTGCCTTGCCAAACAATTAGGTTACCAGACGTATAGTTCTGTCTCCTAAAGCGCTATCTGAATAAGTATTTATGTGTGCACATTCAGGTGTGTTGACCTAGTAAACCGCAGACAATTTTCGTACAATTAGTTGTGCAAACTAGCGTTAAATTTAGGTTAGTTCGCTGTCCTGTCGCATAGTATGTCGATTAGCTGACTAGCTTAGCTAGCCAGACTACCGTTTATGGTCTGGCCAGACatacagacggacagacagaccgCCGTGTCTCAATGATTATTTGGTTCCCTTGCTTTAGGGACTATGCCATATGCGCCCTCTGTAGTGTCTTATTTAGCTCAGAGTAAACCCGAACTCACCGTAGCTACCTCACCGAGCCTTTAGCTAGCTAAGATAACcaagttgtgtgtgtgcaggagacTATGAGCAACTCCAACAGTATTTAGCTGCGTTTGTTGCTGTCGCGCGCGAGCAGAATAATGGCGTTTTAACGCACGTATATTTTAATTGTTCGcaattttaagtattttaatggGATTGATAAGCGTGGCTGAACGTAGCCAATCCTCCTGGACCGCCGGCTCGCTCTAACAGAAATGGCCTTCCATGGCTCCGCTCGGCCCGCTGTGTGTGGAAACTTGTTCCCAGCCTCGGATTTGGGCCACAAATATTTCTGCGTGAACAATTCAGGAAGTAACGCAGCCTGCAGCGGCTTAAACGGCTCCCAGAACCCAGCCGGGCCCAGTCAGCCGGCCGAGACCCCGCGACACCCGTCGACTATCGGAGGGAGCACAGGCGGAGGAGCAGCGGTGCCTCAGCCTCACAGCAGCCCGGCCAGCGAGGTGCCCTGCCCGGCTGAGATGGAGCCCGACAGGCCGATCGGCTACGGAGCCTTTGGTGTTGTGTGGTCGGTGACGGATCCCCGGGATGGACGGAAAGTTGCTCTCAAGAAAATGCCGAATGTCTTCCAGAACCTGGTCTCCTGCAAGCGCGTCTTCAGGGAGCTCCGCATGCTGTGCTTCTTCAAACATGACAATGTGTTGTCTGCTCTGGATATTCTGCAGCCTCCACAGATTGACTGCTTTGAAGAGATATATGTGATCACAGAGCTGATGCAGAGTGACCTGCACAAAGTCATAGTGTCTCCTCAGCCTCTTACCACCGACCACATAAAAGTGTTTCTCTACCAGATACTCAGGGGCCTGAAATACCTGCACTCTGCTGGAATTCTGCACAGAGACATTAAACCAGGGAACCTGCTGGTCAACAGCAACTGTCTCCTTAAGATTTGTGACTTTGGGCTGGCTCGAGTTGAAGAGCCTGACTCCTCACGTCACATGACCCAGGAAGTGGTGACGCAGTACTACAGGGCCCCTGAGGTTCTGATGGGCTCGCGGCATTACGGGTCAGCCATAGACATCTGGTCTGTGGGCTGCATCTTCGCCGAGTTACTGGGCCGCCGAATCCTCTTTCAGGCTCAGAGCCCCATCCAGCAGtTGGATCTGATAACTGATTTACTGGGAACTCCTCCACTGTCTGCCATGGCATCTGCATGTGAGGGTGCTCGAGCACACATTCTAAGAGGACCTCACAAACCGCCGTCACTGTCTGTCCTGTACATGCTGTCAGACGGAGCCACCCACGAGGCTGTTCATCTTCTGTGCCGCATGCTAGTCTTTGATCCAgctAAGCGGATCTCTGGCAGCGACGCGCTCTCTCACCCATATCTTGACGAGGGCCGCTTGCGGTATCACACATGCATGTGTAAGTGCTGCTACTCAGTACCCAGTGGCAGAGTGTACACCCGGGACTTTGAACCTGCTGCAGAGAGGCCCTTTAGCCACAGCTATGAGGAGAGCATGCTTTCTGTCTGGCAGGGCAAAGAGCTCATCCATCGTTTCATCACTGAGCACCAGCAGGGCAAAAGAGTGCCTTTGTGCATCAACCCCCAGAGTGCAGCCTTCAAGAGCTTCATCAGGTCCACTGCTTGGCATTCCTCTAAAGTATCgaggaaagaagagagatgagatgaggagTTTGTTAAGATAGGAGTCATGGGAGATGTAGTCACCTATAGGAGCATGCTTGTGCTTGAgatgaatgactgtttacatttGGTTTTTGTCAGATTATGTAGGTCTGAATGCCTAGGCTTGGTGCTAAGTTTGGCACAGGATGAACATCCTAACattgtccaaaaaaaaccctacagtACCTAATTCTGTAGACATTCTTTCAATAGTGACAGTCCAATTATGCTGCTGCGAACATTTTATACTGACTGAGCTTGAGGATTATGGATACTGAATTTCAGAAGAAACTCCTTTTCATGGATTGAAGACAGATAAGCGTTGTGGTGGTGAtggcacatgtgtgtgtgttgaagtccAACAATGTTGTGCAATACCAATATGTGGGGGGAGGTTTCAGTATTTGTGGGCTTCAATTGCCATTCAGACTTGTTCCTGTTGTTATGTTTTCTGTCAAAAGTCTTTGTGTTCCTTAACTGTTCTTGCGGTAATTAGTTTTTCTCACAAGTTCTTCCTTTATTTCCTGTAACTCTCTTTTAACCATATTTCCAGTATTGCATAGTGTCATACGAATTTGGGttgctttttatttcattatgttACATTAAACTGAAACACGGTGATTTTATAGTTAGAATGCCACCGGTTTTCCTCTCACGTGACTTAATTGTCACTGGATTGTAGATTAAGATGCTGTGGGGATTATGATCACGTAGTCGTATAGGTgcttttgtatgtgtatgtaccTCCTCTAAGCATTATGTGTAaggatttaaatttttatttactttttgaaAGCTGAACAGCTTTTTTAAGGTTAGGAGGGCGTGTTATTGAACTGACTTTGTGTAACTGAAGCTAGAACATGTACACTAAAGTGATGCAtgaggtgtgtgaatgtgtgtgcgtgtatgtgtgtttgcgttGTCCAGGAGCGGAGAGCGTTTAGGGGACGTGCAGTGTTGTGCTATTTCACATTCATTACCTCACATAAATCCACTGTGCACTGGCTGAGTGCGCTCAGACTAAACCCAACTATTAACCACGTACTGTACAGGGATCTGTGCTAATCACTGAACCACTATCACTACAAATCccctttatctgtctgtctctctccctcctagCTCTGGCTGATGCACATGTCTCAGATTGCTTTTGGAGGAAAATGCTGCTGTTCATTTGATTGACGTTTTCACTTCAGTCATAACTAGCGTTGAGCTCAGGTTTCATATCGCAGActctgctgtaaacacacagggACACGTGTCCGGGCCACAGTGGCCCGTTCCTGGTGCTGTGAACTGAAAAGGACCCGTTTTTGCTCTACAACCTCGAGACTCGTGCCTGTCGACCACCACTAGGTGGTGACGAGCACACAGAGCACTGCTGGACAGACACAGTTCAGGAGTCAGGAGTTCAGGAGTCCAGTGATCTTACAACCCcttgtgctgttatttaatttgGTCATAGGAAGATGTTTtcctaaaataataattctacTTTTATGTCAATGCATTGTGACCAATTTTAAGttgtttcttttaatttttttttctttttctttcttaaggTTTTGTTGTTTGACCACTTTGCTATTGTGTTGGTAGAAGAACTAGAAGTGTAGTGACATGAAGAGAACTTATGTTGGTCTAGGATTTCTTGTACCGACTGCTAACTACAACGTGAGGATGTTTTAATTAATGGTGAGATTTGCATTAGTCTTGAGCTCATAGAAGTTAGAcattttatgatgaaaaaaagaaaacttgatATTTGTGTTGATAACTATTATGGTTAGTAATATCAAACACTTGTTTCAAAAGATggctgtttgttgttttttgttatttattttttgtcattttattgaaaatgtttttggacTTTGTGTTTACAACAGATGCTTGaaatttttaaggaaaaaaagtgGTTTAGAGTGGAACTGTCAATAAAGAATGAACACTGGAGACAAAGTGCCACGTCAACTGAA

Function

symbol description
nlk1 Predicted to enable MAP kinase activity. Acts upstream of or within negative regulation of Notch signaling pathway; positive regulation of Wnt signaling pathway; and positive regulation of neurogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including eye; immature eye; neural plate; notochord; and otic vesicle. Orthologous to human NLK (nemo like kinase).
nlk Enables ubiquitin protein ligase binding activity. Involved in protein stabilization and transforming growth factor beta receptor signaling pathway. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in cytoplasm and nucleus.

NR:

description
PREDICTED: serine/threonine-protein kinase NLK2-like

GO:

id name namespace
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917148.2 True 4529 mRNA 0.45 11 8783399 8793415

Neighbor

gene id symbol gene type direction distance location
tlcd3ba fam57b,fam57ba,LOC108410608,LOC107678875,LOC107684641,LOC107710888,LOC107754912 coding downstream 4331 8764679 ~ 8779068 (-)
rundc3aa rundc3a,LOC108259691,LOC108413389,LOC107590794,LOC107684642 coding downstream 20812 8747709 ~ 8762587 (-)
fam117aa fam117a,LOC108413398,LOC101073443 coding downstream 38356 8729965 ~ 8745043 (-)
slc35b1 slc35b1,LOC107590797,LOC107684645 coding downstream 54801 8716324 ~ 8728598 (-)
spop spop,LOC107754841,LOC100710366 coding downstream 123278 8566771 ~ 8660121 (-)
LOC113528536 LOC108278430,LOC108410602,LOC100535691,LOC107710886,LOC107678873,LOC107582858 coding upstream 2105 8795520 ~ 8802855 (-)
cdipt cdipt,LOC107710884,LOC107582865,LOC107678876,LOC107684638 coding upstream 11827 8805242 ~ 8808981 (-)
taok2a taok2,LOC108278428,LOC107590788,LOC107710882 coding upstream 17993 8811408 ~ 8834736 (-)
hirip3 hirip3,LOC107689078,LOC107552470,LOC107739380 coding upstream 128094 8921509 ~ 8927911 (-)
kctd13 kctd13,LOC107739382,LOC107567055,LOC107552471,LOC107660789,LOC107755045 coding upstream 136196 8929611 ~ 8936540 (-)
G208016 NA non-coding downstream 134036 8574635 ~ 8649363 (-)
G207895 NA non-coding downstream 248687 8534503 ~ 8534712 (-)
G207860 NA non-coding downstream 290358 8492815 ~ 8493041 (-)
G207793 LOC107737118,LOC107558774 non-coding downstream 351138 8431998 ~ 8432261 (-)
G207732 NA non-coding downstream 425325 8353710 ~ 8358074 (-)
G208062 NA non-coding upstream 67148 8860563 ~ 8873502 (-)
G208063 NA non-coding upstream 78561 8871976 ~ 8914559 (-)
G208097 NA non-coding upstream 162027 8955442 ~ 8955655 (-)
G208098 asphd1 non-coding upstream 162451 8955866 ~ 8956397 (-)
G208099 NA non-coding upstream 163846 8957261 ~ 8958211 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 70081 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 493591 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 498807 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 515761 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1077907 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 319551 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 403081 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 616389 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 670916 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 936436 9729851 ~ 9732566 (-)

Expression


Co-expression Network