LOC113528542


Basic Information

Item Value
gene id LOC113528542
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5953733 ~ 5961050 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917153.2
tgtttaaaaaaaaaaaaaaaagtgctcatgtaaaataacaggatgATGCAACTAGAGAGAAAGGGAAGTGACACGTGTTGTGGCGCTCCTGACTTCAAATGCCTTTATTATCATGTGTTAGAAAACTCTTTGCTGTCTCTTTACTGTGGACCATGAAGAAGAATCAACCCATCTACGACAATGTTACGTCTATGAGAGATGAGAGTCCAGGAAGTGGAAGAAGATGTGGTTATTGTTtagtgatctctctctctgttctcctcttcctctctctgatgGCCAATGGTCTTCTGACCTATTTTTATGTTAAACTCAAATGGCCCTCAGACACTTTGTCTGAGCAGGCCAGGAAGTGCTCAGCTGGAGattGTAAAATCCAGAATGTACCAATCACTTCATCTGAGCAGATCAGAAGATGCTCAGCTAGAGAGCGTCAAATACAGTACAAAGACAGACTCTACATTTTTCCTACAGATGAAATGAGCTGGTTTTCCAGTAGAGAGAACTGTCAGGAATTAGGGGGAGACCTGGTGATCATTAACAGTAAAGAGGAACATAAGTTCCTTGTTGGTGCAATGAACACGTTTAGCAATTCTCTGCACTGGATTGGTCTGAGAAATGTGGAAAAGGAGGGCAGGTGGCTATGGATAGATGAAACACCTCTTATGCAAAATCTTTCgtGGTGGAAGTACACTTCAGAGGGCAGCGCATCAGAGAGAGAAGACTGTGTGGGTTATTACGATGGGCAATGGGTGGATCTGTCCTGTTCAACATTAGAAAGGAGGATCTGCGAGATCATTTGCACTCACTGATCTCCCTGTAAAAGACATATATTTACAGTCTTTTTGATGTAATATGGACTGTAATATGACATGGAGGTCCTTGATTTTTGTTTGAATGGTATAACTATTAAAGGTGTAGTACAGCTTTGTACAGGCAGCTTATGCTATTGTACTaaacttcagtaactgctttatcctggtcagtgcgAATCCGGAGCCTTTCCCAGGAATACTGCGAGGgaaacagagagggagacacCCTGATGGGATAACTTTAGTGTTGTTAACTCAAAATCAGTAAAAAGGTTCACAAATTCAATCTTAATGTTGCCTGAACTGATATGTTTTAATATCAACTgaacaaaaagtgaaaaaaacaaagagagacgACAGTTTGAAGGAAAAACACGGAATGTAATTTGTTCTATACAAATATGTTTCAGTCATTAACAGCCACCTTTAAAGTGAATGAACTTTAAAGACACCAGGATTCAGAATTAAACTGGCAGTGACTTTTTGCTTTTGTTGTAATGATAGAGGAAATCCGAAAAACACAAAACTCATAATGTTTAAGGTgacaaaaaagtgtaaattgCTTCCAAACTGAACCTTATACATAAAGATAACAAGTACCAACACAACAGCTTATTTGTGTACCTAGGAGCTGGCAGATGGTTTAAcaaacatttatcattttacCATTTCAAGCAGTAAATGTTTGCCACTACTCTTTTCCTCTGAATCTGTTTTTACAGACGAGGGGTCAGGAAGTGGCAAGAGACATGGGTGTCTGTTGGTggtttctctcctctctctctctctgattgctAACGTGCTTCTCGCCTATTTCTGtaagtgtttttgtatttgtcatttgttcatttaaaataaaatacattaacaaTCCAT
>XR_004579346.1
tgtttaaaaaaaaaaaaaaaagtgctcatgtaaaataacaggatgATGCAACTAGAGAGAAAGGGAAGTGACACGTGTTGTGGCGCTCCTGACTTCAAATGCCTTTATTATCATGTGTTAGAAAACTCTTTGCTGTCTCTTTACTGTGGACCATGAAGAAGAATCAACCCATCTACGACAATGTTACGTCTATGAGAGATGAGAGTCCAGGAAGTGGAAGAAGATGTGGTTATTGTTtagtgatctctctctctgttctcctcttcctctctctgatgGCCAATGGTCTTCTGACCTATTTTTATGTTAAACTCAAATGGCCCTCAGACACTTTGTCTGAGCAGGCCAGGAAGTGCTCAGCTGGAGattGTAAAATCCAGAATGTACCAATCACTTCATCTGAGCAGATCAGAAGATGCTCAGCTAGAGAGCGTCAAATACAGTACAAAGACAGACTCTACATTTTTCCTACAGATGAAATGAGCTGGTTTTCCAGTAGAGAGAACTGTCAGGAATTAGGGGGAGACCTGGTGATCATTAACAGTAAAGAGGAACATAAGTTCCTTGTTGGTGCAATGAACACGTTTAGCAATTCTCTGCACTGGATTGGTCTGAGAAATGTGGAAAAGGAGGGCAGGTGGCTATGGATAGATGAAACACCTCTTATGCAAAATCTTTCgtGGTGGAAGTACACTTCAGAGGGCAGCGCATCAGAGAGAGAAGACTGTGTGGGTTATTACGATGGGCAATGGGTGGATCTGTCCTGTTCAACATTAGAAAGGAGGATCTGCGAGATCATTTGCACTCACTGATCTCCCTGTAAAAGACATATATTTACAGTCTTTTTGATGTAATATGGACTGTAATATGACATGGAGGTCCTTGATTTTTGTTTGAATGGTATAACTATTAAAGGTGTAGTACAGCTTTGTACAGGCAGCTTATGCTATTGTACTaaacttcagtaactgctttatcctggtcagtgcgAATCCGGAGCCTTTCCCAGGAATACTGCGAGGgaaacagagagggagacacCCTGATGGGATAACTTTAGTGTTGTTAACTCAAAATCAGTAAAAAGGTTCACAAATTCAATCTTAATGTTGCCTGAACTGATATGTTTTAATATCAACTgaacaaaaagtgaaaaaaacaaagagagacgACAGTTTGAAGGAAAAACACGGAATGTAATTTGTTCTATACAAATATGTTTCAGTCATTAACAGCCACCTTTAAAGTGAATGAACTTTAAAGACACCAGGATTCAGAATTAAACTGGCAGTGACTTTTTGCTTTTGTTGTAATGATAGAGGAAATCCGAAAAACACAAAACTCATAATGTTTAAGGTgacaaaaaagtgtaaattgCTTCCAAACTGAACCTTATACATAAAGATAACAAGTACCAACACAACAGCTTATTTGTGTACCTAGGAGCTGGCAGATGGTTTAAcaaacatttatcattttacCATTTCAAGCAGTAAATGTTTGCCACTACTCTTTTCCTCTGAATCTGTTTTTACAGACGAGGGGTCAGGAAGTGGCAAGAGACATGGGTGTCTGTTGGTggtttctctcctctctctctctctgattgctAACGTGCTTCTCGCCTATTTCTattttaaacataaatgggCCCCAGTCACTTTGTCTGATCAGATTGGGAACTGCTCAACTAGAGATACAGGCGATCAACACACGCCTTACAAGGACAGACTCTACATTTTTTCCAGTGACAaaatgaactggaacgccaGCAGAAAGAGCTGTCAGGAACTGGGGGGAGACCTAGTGATCATCAACAGTAAAGAGGAACATGTATACTCAAATATTAATCCATGCCActtacagttgtatgcaaaggtTTGGGCACCTCTGGCCAAATCACatattttgttgaaaaaaatgttgtacatatatttatatttagaaaaatatattttgtttgttaaaaaaaacgaCAACAAGAAGTAAACAAGACTTCTGGAtcaactattttaaaaatatttcttctgcaaatattaataaacagtttatatttaattcacTTAAAAATAGAGAAAGTAAGTAACTATGGCATGTGCAAAGGTTTGGACACTCTTCCAgttgttaattaatttgttaGGCCTTAATTGACTTGTGAGGACTCTTACTCAAGTCAAGAATTGTCATTACGAATTGTCAGCTGATGACAATTCCAGAGTATAAAAGATTCTCTGACTCTTCTAACCTTGTGCTAACACTCAACAATCATGGTCTCCTCTAAGCACCTGACTGATGATCTGAAAATCAAGCTAATTCATGTCTACAAAGCAGATGAAGGctataaaaagaaacaaaacgtTTACAAACCCACAACTGCCACTGTACCAAATGTCATTGAAAATGGCAAGGGAAGTCAAGGTAAGACCTGGAAGACCAACAAAACTCTCAAAACTGCCCGTATCCTGGccagaaaggcaaagcaaaaccGCCATAAGGACCTGCAGGAAAGTTTAGCTGACACAGGAGTAGTGGTGCACTGTTCTATTCTGCAGTGctgtttacacaaacatgatctgcatggaagagtcatcagaggAAACCTTACCTGCAACCTCATCACAAAAGGAAATGTCTGATGTATGCAAAACAACATCTAGATAAGCCAGAGAGCATTTTGAAAACAACTGCTGTGGACTGGTGAAGTAAAAATGGAACACTTTGGCCACAATCAAAGTGGGGGGGGAGGGATTGGCTTCTACAACAGGAAAATGATCCAAAACAAACCTCAAAATCCACCATCTACTACTTCACGAAATGCAAGCTGAAGCTTTTTGAGTGGCCATCACAGTCCTCTGACTTGAACACCATTGAAAATCAGTGGGTAGATCTTAAACATGCTGTGGATGCAAAACGGTCATAGAATCTCTCAGGATTAGAAACATTTAGCAAGGAAACGTGGGTGAAAATTCATTAAACAGGAATAGACAGACGATTAGCTGGCtacaaaaaaaggtttgaagCTTTTAAAAGCTGTAAAAT
>XR_004579347.1
tgtttaaaaaaaaaaaaaaaagtgctcatgtaaaataacaggatgATGCAACTAGAGAGAAAGGGAAGTGACACGTGTTGTGGCGCTCCTGACTTCAAATGCCTTTATTATCATGTGTTAGAAAACTCTTTGCTGTCTCTTTACTGTGGACCATGAAGAAGAATCAACCCATCTACGACAATGTTACGTCTATGAGAGATGAGAGTCCAGGAAGTGGAAGAAGATGTGGTTATTGTTtagtgatctctctctctgttctcctcttcctctctctgatgGCCAATGGTCTTCTGACCTATTTTTATGTTAAACTCAAATGGCCCTCAGACACTTTGTCTGAGCAGGCCAGGAAGTGCTCAGCTGGAGattGTAAAATCCAGAATGTACCAATCACTTCATCTGAGCAGATCAGAAGATGCTCAGCTAGAGAGCGTCAAATACAGTACAAAGACAGACTCTACATTTTTCCTACAGATGAAATGAGCTGGTTTTCCAGTAGAGAGAACTGTCAGGAATTAGGGGGAGACCTGGTGATCATTAACAGTAAAGAGGAACATAAGTTCCTTGTTGGTGCAATGAACACGTTTAGCAATTCTCTGCACTGGATTGGTCTGAGAAATGTGGAAAAGGAGGGCAGGTGGCTATGGATAGATGAAACACCTCTTATGCAAAATCTTTCgtGGTGGAAGTACACTTCAGAGGGCAGCGCATCAGAGAGAGAAGACTGTGTGGGTTATTACGATGGGCAATGGGTGGATCTGTCCTGTTCAACATTAGAAAGGAGGATCTGCGAGATCATTTGCACTCACTGATCTCCCTGTAAAAGACATATATTTACAGTCTTTTTGATGTAATATGGACTGTAATATGACATGGAGGTCCTTGATTTTTGTTTGAATGGTATAACTATTAAAGGTGTAGTACAGCTTTGTACAGGCAGCTTATGCTATTGTACTaaacttcagtaactgctttatcctggtcagtgcgAATCCGGAGCCTTTCCCAGGAATACTGCGAGGgaaacagagagggagacacCCTGATGGGATAACTTTAGTGTTGTTAACTCAAAATCAGTAAAAAGGTTCACAAATTCAATCTTAATGTTGCCTGAACTGATATGTTTTAATATCAACTgaacaaaaagtgaaaaaaacaaagagagacgACAGTTTGAAGGAAAAACACGGAATGTAATTTGTTCTATACAAATATGTTTCAGTCATTAACAGCCACCTTTAAAGTGAATGAACTTTAAAGACACCAGGATTCAGAATTAAACTGGCAGTGACTTTTTGCTTTTGTTGTAATGATAGAGGAAATCCGAAAAACACAAAACTCATAATGTTTAAGGTgacaaaaaagtgtaaattgCTTCCAAACTGAACCTTATACATAAAGATAACAAGTACCAACACAACAGCTTATTTGTGTACCTAGGAGCTGGCAGATGGTTTAAcaaacatttatcattttacCATTTCAAGCAGTAAATGTTTGCCACTACTCTTTTCCTCTGAATCTGTTTTTACAGACGAGGGGTCAGGAAGTGGCAAGAGACATGGGTGTCTGTTGGTggtttctctcctctctctctctctgattgctAACGTGCTTCTCGCCTATTTCTattttaaacataaatgggCCCCAGTCACTTTGTCTGATCAGATTGGGAACTGCTCAACTAGAGGCGATCAACACACGCCTTACAAGGACAGACTCTACATTTTTTCCAGTGACAaaatgaactggaacgccaGCAGAAAGAGCTGTCAGGAACTGGGGGGAGACCTAGTGATCATCAACAGTAAAGAGGAACATGTATACTCAAATATTAATCCATGCCActtacagttgtatgcaaaggtTTGGGCACCTCTGGCCAAATCACatattttgttgaaaaaaatgttgtacatatatttatatttagaaaaatatattttgtttgttaaaaaaaacgaCAACAAGAAGTAAACAAGACTTCTGGAtcaactattttaaaaatatttcttctgcaaatattaataaacagtttatatttaattcacTTAAAAATAGAGAAAGTAAGTAACTATGGCATGTGCAAAGGTTTGGACACTCTTCCAgttgttaattaatttgttaGGCCTTAATTGACTTGTGAGGACTCTTACTCAAGTCAAGAATTGTCATTACGAATTGTCAGCTGATGACAATTCCAGAGTATAAAAGATTCTCTGACTCTTCTAACCTTGTGCTAACACTCAACAATCATGGTCTCCTCTAAGCACCTGACTGATGATCTGAAAATCAAGCTAATTCATGTCTACAAAGCAGATGAAGGctataaaaagaaacaaaacgtTTACAAACCCACAACTGCCACTGTACCAAATGTCATTGAAAATGGCAAGGGAAGTCAAGGTAAGACCTGGAAGACCAACAAAACTCTCAAAACTGCCCGTATCCTGGccagaaaggcaaagcaaaaccGCCATAAGGACCTGCAGGAAAGTTTAGCTGACACAGGAGTAGTGGTGCACTGTTCTATTCTGCAGTGctgtttacacaaacatgatctgcatggaagagtcatcagaggAAACCTTACCTGCAACCTCATCACAAAAGGAAATGTCTGATGTATGCAAAACAACATCTAGATAAGCCAGAGAGCATTTTGAAAACAACTGCTGTGGACTGGTGAAGTAAAAATGGAACACTTTGGCCACAATCAAAGTGGGGGGGGAGGGATTGGCTTCTACAACAGGAAAATGATCCAAAACAAACCTCAAAATCCACCATCTACTACTTCACGAAATGCAAGCTGAAGCTTTTTGAGTGGCCATCACAGTCCTCTGACTTGAACACCATTGAAAATCAGTGGGTAGATCTTAAACATGCTGTGGATGCAAAACGGTCATAGAATCTCTCAGGATTAGAAACATTTAGCAAGGAAACGTGGGTGAAAATTCATTAAACAGGAATAGACAGACGATTAGCTGGCtacaaaaaaaggtttgaagCTTTTAAAAGCTGTAAAAT

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917153.2 False 1691 mRNA 0.39 7 5955746 5961050
XR_004579346.1 True 3039 misc_RNA 0.39 9 5953733 5961050
XR_004579347.1 False 3033 misc_RNA 0.39 9 5953733 5961050

Neighbor

gene id symbol gene type direction distance location
cdk21 LOC108274791 coding downstream 15302 5934040 ~ 5938431 (-)
svilc LOC108281065 coding downstream 21857 5897560 ~ 5931876 (-)
znf281a LOC108260862 coding downstream 176508 5757144 ~ 5777225 (-)
si:ch211-198m17.1 NA coding downstream 223710 5698087 ~ 5730023 (-)
mpp3a mpp3,LOC107720025 coding downstream 262461 5657837 ~ 5691272 (-)
nmt1a nmt1,LOC108432052,LOC102778525 coding upstream 1638 5962688 ~ 5978373 (-)
plcd3a plcd3,plcd3a,LOC108432051,LOC107581738,LOC107654535,LOC107591554 coding upstream 20150 5981200 ~ 6017987 (-)
arhgap23a LOC108276663 coding upstream 65229 6026279 ~ 6105884 (-)
nudt9 nudt9,LOC107590571 coding upstream 188305 6149355 ~ 6160172 (-)
atp2a1 atp2a1,LOC108411044,LOC107755578,LOC107567734,LOC107690283,LOC107590562 coding upstream 262420 6223470 ~ 6238688 (-)
LOC113528476 NA non-coding downstream 229 5952798 ~ 5953504 (-)
G206210 NA non-coding downstream 226053 5721634 ~ 5727680 (-)
G206164 NA non-coding downstream 321814 5631715 ~ 5631919 (-)
LOC113528378 NA non-coding downstream 668828 5280730 ~ 5284905 (-)
G205628 NA non-coding downstream 896617 5056910 ~ 5057116 (-)
LOC113527891 NA non-coding upstream 226424 6187474 ~ 6189926 (-)
G206628 NA non-coding upstream 242262 6203312 ~ 6204196 (-)
G206649 NA non-coding upstream 312766 6273816 ~ 6346363 (-)
G206924 NA non-coding upstream 863846 6824896 ~ 6825760 (-)
G206923 NA non-coding upstream 865318 6826368 ~ 6828146 (-)
retsat LOC108257121,LOC108432054 other downstream 2736 5940862 ~ 5950997 (-)
G206282 NA other downstream 112256 5841137 ~ 5841477 (-)
G206236 NA other downstream 197000 5754767 ~ 5756733 (-)
G205633 rps11,LOC102786880,LOC107674708 other downstream 861811 5089336 ~ 5091922 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other downstream 1218831 4722417 ~ 4734902 (-)
G206604 NA other upstream 165860 6126910 ~ 6194996 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other upstream 685008 6646058 ~ 6726165 (-)
G207231 spsb3 other upstream 1357553 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 1464667 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 1598717 7559767 ~ 7705492 (-)

Expression


Co-expression Network