leprotl1 (leprotl1,LOC103152176)


Basic Information

Item Value
gene id leprotl1
gene name leprotl1,LOC103152176
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20430641 ~ 20438868 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917157.2
TCGACAAACTATCTTATACCGGAAGTGCGTTATGGATATGCGTTGTGGATCAACTGTAGCGCCGCTTGTTTCGTTCTCTTGTGTTGACTGTGCGCGACATATACGGAGGAGTCTCTGACGTTCCGACgcttttttaatgtagaaacgaTGGCCGGTATTAAAGCCCTGATCAGCCTCTCCTTCGGTGGAGCCATTGGCCTCATGTTTCTGATGCTTGGCTGTGCCTTGCCTGTGTATAATGAATACTGGcccctctttcttctcttcttctacATCCTGTCTCCTATCCCGTACTGCATCTCTCGGCGTGTGGTGGATGATACAGACTCGGCTAGTAATGCCTGCAAAGAACTGGCCATTTTCCTCACCACAGGGATCGTTGTGTCTGCCTTCGGCCTGCCCATCATATTCGCACGCGCTAGTGTGATTGCCTGGGGGGCCTGCGCTCTCGTCCTGACAGGAAACATTGTCATTTTTGGCACCATTCTGGGCTTTTTCCTCGTCTTTGGGTCGAACGACGACTTCAGCTGGCAGCAGTGGTGAAGCGGAGAACTGTTTTTACCAACATACATTCTTACCACGGCTATTGTCGTGGTTCTTATTGTCgtctttgttattatttatagtgaCTGGCCATCCGTATTAAGAGGAAATCAGTGCAATAAGTTGTCACTGGGATCGGTTTGACCTCAGaaagctgttgttttttctgtttattttgtgcattagcaatgtttctagttttttttttccttcttgcaGGCATGATCGACGCTTCTCTacagaatgtaaaatgtataataccacagaaaaaaatgagctAATATGGATAGATAATTCTCTTTATGAAGTCTGTGGTTAGAGCTAATCACAGACTCTGTGATTTGGAGCGCATCCTTTAGCATTAGTCTTTAGCTTGGTGAATCTgctgtgtaatattttaaaagtgaaTTGCCTTTTCAAGTTACATGGGTTTAGTTATAATTTATTCACGTAAAATGCACTGTCTACTGCCACCATTGCATTATAGGTAGCACAAGTCCATCCCATAACCAAACGCCAGAACCATTGCTGCTGTTTAATGTATAATCTCGCAATTTAGTAGCGATACCCTGTATAATGCTCAGTACACAGCCAGTGTTTGAGATTAAATTGTAATCGAATAAAACTTTGTGTATAGGAGCTACAAAGCTCACTTTGCTAACAAGTAACTGAGCACTGACTAGCATCATGCTAACCGTATTCTGAAATCATCCCACTCGCTTCAAATGGCGTCATTAGCACATAGACTATTTCATGTAGTTGTAAAGTGAGTCcgtatttacaaatataaatatataataataataataataataagtgatcCTGtctcaaaatggctgccactaTAGTTTTCAGCTGTGGTGTCAGCATCCTATAAGCAGGTCTGTTTAAGATTAACACTGAGGTAAAAAAGGGATTATTTCACTACACAGTTGACATGATGCTAATCATTCTAGTCTAAATGTTGTGtgcactggagctgtgagaaaGATTAGCATTATGCTAACTATTATCTGAAATCATCACACTCGCTTCAAACAGCTTCATGTAGTACCATTAGCACAGACTATTTCATATAGTTGTCAAGTGAGtctgtatttacaaatttaaatatataaataagtataaGTGATCCTGtctcaaaatggctgccactaTTGTTTTCAGCTTTAAGGTAATTTTGTCAGCACCCTATAAGCAAGTCTTTAAGACTGAGGTAAAAAACACTGAGGTAAAAAGTGATTATTCTAGTCTAAATGTTTGTACTGGAGGTGTGACGTAGATTAGCGTTATGCTAACTGTGCTCTGAAAACGTCACACACTTCAAATAGCTTTATGTAGTAGCGTTAGCACATACACTATTTCATATAGTTGTAAAGTGAGTCTTTTGTGAGTGAAAGTGAGTAAAGTGAGATTTTAATATATCAATAAGAGTAAGTAATTCTgtttcaaaatggctgccgaTATTGTTTTCAGCTGTGAGATAATTTTGTGTCAGCAACATATAAGCAAGACTGTTTAAGATTAACACTGAGGTAAAAACGCAGTTACGAAGTTAGCATGATGCTGATCATTATAGTCTAAATGTTTtgtgcactggagctatgagaaAGATTAGCATTATGCTAACTGTATCCTGAAATacttacacactcacttcaAACAGCAAGTAACAAGAATTTCAGAAACTTGTCTGTAATTTACCTCAGAGGTAAGCGTGACAGTTTCAGCAGAGTTAGCTGTATGCTAATCTGTATTCATAGGCATTTATTACTTGTTAGCTTTATTAGCTTTGTAGCTCTTTGCGAATACTAAAGAAAATTTGGACGCAACATGGCTTAGcttactgaattactgaagGTGTGGGGAGAAATTTTTCAATTTAGTTTGACTTTTCTCTTCAAAACCATTAATGTgaagtcctgttttttttaggtGACAAAAGTTGAGTCTCAAAACTTTTAGAAGCACTGAATAATTtgttacatgtttatttttttttcatattatttatttcttcctcTGTTACTGTACTGTGTAACTGTAACCATGTAAGAAACTGACTTATTGCAAGttgataaattattttaatgtatttatcaGCCATTTGTCCTACGATAAGGTCGAGTGTCACATTCGCCAAAAGGTACTTTCATTCAGCAATGTCGGccaattctgtgtgtgtatagtcGGAGTCCAAAACcaccaagaactgtttttattcacaCTGGGAAGTGACAAGTCGCTGATGTGTCACTTGCaatttgtctcttgtgggcttGTACTGTCCAGCGTTTTTGGAATAAATTCAGTTtttggtctcagacttttaaaCCCGACTATGAGTCAAAATGAAGGATAAGCCTCTGAAGTCATCTAGAGTTTAGTTTATTAGCtacatgcaaaataataataataaaaaaaaaagaattcacaCATTTCTAGTTAATCCAAAGTGctgtaaatgtttcatttcaaatactTTGCTTGTTTAAACTTGTGTTTCAACTAGACGTCCTAAGCTGCTTATATCTAAAAACATTGTGgtcattgttttcattgttttcatttttt

Function

symbol description
leprotl1 Enables identical protein binding activity. Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway and negative regulation of growth hormone receptor signaling pathway. Predicted to be integral component of membrane. Predicted to be active in endosome.

NR:

description
PREDICTED: leptin receptor overlapping transcript-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917157.2 True 3117 mRNA 0.38 4 20430641 20438868

Neighbor

gene id symbol gene type direction distance location
drd5a drd5,LOC107701828 coding upstream 427961 20000958 ~ 20002680 (+)
zbtb49 zbtb49 coding upstream 433708 19963720 ~ 19996933 (+)
mcm7 mcm7,LOC107716516,LOC107744067,LOC107665623 coding upstream 529657 19888315 ~ 19900984 (+)
LOC113527852 stag3 coding upstream 545086 19860406 ~ 19885555 (+)
LOC113528548 stk32b coding upstream 587959 19826650 ~ 19842682 (+)
LOC113528524 LOC108258618 coding downstream 573 20439441 ~ 20444946 (+)
ankrd50 ankrd50 coding downstream 307840 20746708 ~ 20779232 (+)
dele1 kiaa0141 coding downstream 596392 21035260 ~ 21044307 (+)
LOC113528291 LOC108261075,LOC108434533 coding downstream 608393 21047261 ~ 21082014 (+)
tlr1 LOC108258270 coding downstream 742545 21181413 ~ 21184850 (+)
LOC113528473 NA non-coding upstream 37421 20264198 ~ 20393220 (+)
G214144 NA non-coding upstream 216214 20213406 ~ 20214427 (+)
G214098 wdr1 non-coding upstream 248763 20071695 ~ 20181878 (+)
G214012 NA non-coding upstream 460485 19968008 ~ 19970156 (+)
G213984 NA non-coding upstream 518266 19912139 ~ 19912375 (+)
G214369 NA non-coding downstream 32661 20471529 ~ 20471764 (+)
LOC117598998 NA non-coding downstream 406273 20845141 ~ 20852594 (+)
G214548 NA non-coding downstream 469960 20908828 ~ 20926678 (+)
G214694 NA non-coding downstream 705952 21144820 ~ 21158088 (+)
G214723 NA non-coding downstream 724032 21162900 ~ 21163304 (+)
LOC113528520 znf518b other upstream 257289 20022509 ~ 20173352 (+)
G214015 lyar other upstream 449261 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 477355 19933824 ~ 19953286 (+)
LOC113528458 LOC108275785 other upstream 518909 19873076 ~ 19911732 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other upstream 975607 19373236 ~ 19455034 (+)
nudt6 nudt6 other downstream 572906 21011774 ~ 21024087 (+)
hopx hopx other downstream 901548 21340416 ~ 21349086 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 1043154 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 1075705 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 1207212 21646080 ~ 21649152 (+)

Expression


Co-expression Network