zgc:112148 (tvp23b,LOC105899270,LOC108437154)


Basic Information

Item Value
gene id zgc:112148
gene name tvp23b,LOC105899270,LOC108437154
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14935237 ~ 14941094 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917170.2
gacaatttttctgtatatataatCTGGTTTAGCTATTTTACAAAGCTGTTTTTAAACTCTTCCGTTCCTTGAAACtagtttttagtgttttagcTATACGCTAACTATACGCTAACATTAACTACGCGTAGACATAGGCGAAATCCCAAATAGCACATTAACAAACATGATATGTGCACTACTTAGTGCACTACGGTGTAGAAATCATAACAATGCCTTATACCCTATATGGAGGAAGTAgtgaagccatttgggattcagccttcTTGCTAGAGAAGCGCTGGGGTCCTTCGGGCAGATCCTCGGCTACCTTTGTTTACATACACGTCACCAGGAAGTGGACCAACCAAACTTCGAAATGTTAAGACAGGATTCACAGGGTGATGTTCCACTTTTTGACGAGGATGAGGATGcagccagcagcagcaagtcAAAAATCCAgcatCCTTTGGCCACTTTCTTCCACCTTTTCTTCCGTGTGAGTGCTATCCTGGTCTATCTGTTGTGTGAACACATCAGCAGCAGCTACATTGCCAGCATGGTCACCATCATTCTCCTCCTGTCATGTGACTTTTGGACAGTGAAGAATGTGACTGGGCGGCTACTGGTAGGCCTGAGGTGGTGGAATCAGGTGGATGAGAATGGGAAGAGCCATTGGGTGTTCGAGTCTCGAAAGGAAACCAGCAGAAAAATTGTCTCGAGTTCAGAATCACGGATTTTCTGGCTCGGCCTTATTGTGTGTCCCATCTTATGGGtgctctttgtgttttcttctctcttttccttcaacataaagtggctgGCGGTGGTGATTATGGGAGTCGTGTTACAGTGGGCTAACCTCTATGGGTACGTCCAATGCAAAGTTGGGGGTGGAACCAATCTGAAGAACATGGCAACCAGCTATGTTGGCCTTCAGTTTTTTAAGCAGgcAATGAACAAATCACAAGGACCCTAATGTGCCTTCAAGGATTTAACAACATGGCGCTGCTAAAgttctaatttattttcttgtacTGACATTCAGTGGGAAACTCTTGCAAGTGTTGGAATTTCTTTTCTCTGACATATGTGCATAAGTGCATATgggcctttttatttttttgtaaacagtTCGGTTCATTCTCCCCTAGAATTCTCCTCTAGAATGTCACCCATATCGGAAATAGCAATATGTTGTCAATGTGTGCCAAGAGCTAAATAGAATATATTGTTGTATACTGTGAGTGGGGTGTTTCTATTGTAAGTCCGTTAATGGTGATACTTTTTGACTATTTAGGAGGTTTCTTAATTCACCACAATTTCCATGATAATTGCATATAAATTACTGAAATGTGGATGTGATGGTATGGCCAAAGCCCAATGACGAGAGTAAAATGCATACTGGAAATATCAGTATCAGCACTTCCAGAATCTGCCATCTGGTGTAAAATAAGTTAACtatgctataaaataaatgttgatcAGGTGGCCAAATCCTATGGCATTTCatcacatctttctttctttctttctttctttctatctttctttctttctttttacatttcattattaaccAGCGTGGAAAGATAGCAAAATTGACTTATGTTATGTTATCACCGCTTTTCACCTATCAAATAATCCATCAGGGCAAAATTGCATTTAAACCtctaatgaaaatgtaatatgaaaTACATTGTCATTTTACATATTCAGGTTTGACTTAAATTTTGAGGGTGATGTGCATCCACAGAAACGGGCTTTATTATATGATGTTTAAGTTGATATTTCGGTGTTAATCTACTAGTTGAAGTGTTGGAGAGCCTACTAAACTTAAGGTGACAGTTAGTGAAAATATAATTGTGTCAAATTTTAGAGAAGGTATGCTATAGTTATATAATTACCAAATAACAATTTTCAACaatgtaaaacatttatgattttatgattgcATAATATgcttcat

Function

symbol description
tvp23b Predicted to be involved in protein secretion and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in lens and solid lens vesicle. Orthologous to human TVP23B (trans-golgi network vesicle protein 23 homolog B).

NR:

description
PREDICTED: Golgi apparatus membrane protein TVP23 homolog B-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917170.2 True 1948 mRNA 0.39 7 14935237 14941094

Neighbor

gene id symbol gene type direction distance location
LOC113528525 LOC108260868 coding upstream 3231 14927553 ~ 14932006 (+)
ush1ga ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596,LOC107664446 coding upstream 14560 14912189 ~ 14920677 (+)
hid1a hid1,LOC107710705,LOC107698779 coding upstream 35505 14878966 ~ 14899732 (+)
cyth1a cyth1,cyth1a,LOC106920077,LOC108277039,LOC107552117,LOC103392816,LOC104925066 coding upstream 334230 14534573 ~ 14601007 (+)
usp36 usp36,LOC107717487,LOC104948677 coding upstream 407708 14501308 ~ 14527529 (+)
stk19 stk19 coding downstream 33482 14974576 ~ 14979006 (+)
cyth3b cyth3,LOC108258062,LOC108437157,LOC107556600,LOC101486233,LOC103143117,LOC107664323,LOC107571178 coding downstream 59776 15000870 ~ 15037047 (+)
cep112 cep112 coding downstream 267012 15208106 ~ 15342947 (+)
axin2 LOC108255292,LOC108437161 coding downstream 402163 15343257 ~ 15372183 (+)
tex2 LOC108278257,LOC108437163 coding downstream 496297 15437391 ~ 15469406 (+)
G211287 NA non-coding upstream 34931 14899776 ~ 14900306 (+)
G211247 NA non-coding upstream 90675 14844422 ~ 14844562 (+)
LOC113527943 NA non-coding upstream 90865 14838290 ~ 14844372 (+)
G211208 NA non-coding upstream 220362 14714671 ~ 14714875 (+)
LOC113528421 NA non-coding upstream 290994 14643716 ~ 14644243 (+)
G211338 NA non-coding downstream 69048 15010142 ~ 15010651 (+)
LOC117598819 NA non-coding downstream 262428 15203522 ~ 15204658 (+)
G211540 NA non-coding downstream 528455 15469549 ~ 15471704 (+)
G211543 NA non-coding downstream 545443 15486537 ~ 15488982 (+)
G211838 NA non-coding downstream 764655 15705749 ~ 15706001 (+)
socs3a socs3 other upstream 313449 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 1441295 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 1489551 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 2560865 12367566 ~ 12374372 (+)
arhgap17b LOC108279379,LOC108432202 other upstream 2745167 12158703 ~ 12190070 (+)
LOC117598752 NA other downstream 46992 14988086 ~ 14991450 (+)
G211913 NA other downstream 977123 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 1199236 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 2146190 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 2757579 17698673 ~ 17733006 (+)

Expression


Co-expression Network