s1pr5a (s1pr5a,LOC108260797,LOC108432217)


Basic Information

Item Value
gene id s1pr5a
gene name s1pr5a,LOC108260797,LOC108432217
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11739620 ~ 11743073 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917171.2
agagagagagacgagcgGGAAGAAAGGAGGAGCAGTTCCATTACAAGTCTAATCCTGTCTCGTGCGCTGCTCCTTTCACTTCACTGCTCAGTTGGTAAGGTGAGAGCACAGAGGCTCACATCTGCCTGCTGAAAACTCCCAGGGTTCTTCCAAAAACAAACAGCCCTCCAGACATATGGATTCCTGACAGAACTGATTTAAGCAAGAGGTGAAGAATAAAGTTGCACTCCCACCGCAGAGCTGACTAAACCTCAACACTTTTTGGATTAGTTATCATTTTCATAGTGGAATCATGAACTCCCGAAGGACTAGATGGTGACAAGAGAATTCTAATAAAGGGATTTTTACAGGAGCAATGGAAGCATCGCATGTTGTTTCTGTAGATGCAGGTCCAACAGTGATCACGAAGACCTCCGCTACAACATACCTGATCAGAATGTTCAAGGAGTACCAAAGCAATGCGGTCATTGTAGACCACTACAACTACACAGGAAAGCTGAATGGGAACAGGTACACGGAAGGCATGAAACCTGTAAATATTGCCTTCCTTATTATCTGTCTGCTAATTGTGCTGGAGAATGCAGTGGTTCTTGTTGCGATTTGGAAGAATAAAAAGTTCCACCTGCCCATGTACTACCTTCTGGGCAACCTGACTTTCTCTGACTTGTTGGCAGGATTTACCTACATGGTGAATATCATAACATCAGGGGCCAACACGCTCAAAATGACACCTGTCCAGTGGTTCATTAGAGAAGGTGGAGTTTTCATCACATTAGCTGCTTCCATCATTAGCCTCCTGGCCATTGCTATCGAACGGCATGTTACTATGGTGCGGATGAAGCCATACCAGGGGGCCAAGCGTGGGCGCATGTTTGCACTGATTGGCATAAGTTGGGTGCTCTCAATCATTCTGGGTCTGCTACCCATTATGGGCTGGAACTGCATGGGCATCCTGAACCAGTGCTCAACCGTCCTGCCACTGTACTCCAAGAGCTTCATTCTCTTCTGCATTACGGTCTTCTCTGTTGTATTACTGGCTATTGTGGTCCTCTACGTCCGCATCTTCCGTGTTGTAAAGTCCAACACACAGCGGCTGGCTGGTGCGCCACAACGTAAAGGTATCGCAAAGAAGTCCCAGAAATACATGGCCCTGTTGAAGACAGTCACCATAGTGCTGGGTGTTTTTATCGCCTGCTGGCTTCCACTCTTTCTTCTCCTTGTGTTGGACTTTTTTTGTGCAGCCCGAAGCTGTCCAGTACTCTTTAAGGCAGAGTACTTTCTGGGACTTGCTATGATTAACTCATTACTTAATCCCATAATCTACACATTAACCAGTAAGGACATGCGTAAGGCCATACTGAGACTGCTCTGCAGCTACTGCTTGATCGCAAAAGATGGACAGGTGAGGAAGTTCGGAATAACATTCCTGGACGGCAGCACGAGCAAACCAGAGATGCCATCACACAGGCTAGAGGGCCTGGAGACGGTCTCCACCGGGAATTTTACACCATCTACTATCAAAGCTATTTTTCCCAAAATAACAAAGAGTGTAGTTTTGGGACAATAATGTTCAGGCTGACTTTTACTGTGGTCTGGTATAATGAAGGGAATCTTGAGAGAATGAGCCAGTTGTTCAGAGTGTACCGAAAAGAGCTTCCTTATTAAAGAAATGATTACATAGCTGTAATAATTTTATATCAAGGAAAGCATCAGAGACAGACTGCTTCAGAAAGCATTACAACTTTCATTATGGGCCTAACCAACATTTGAGAACTTTCTTGTTTACTAATTTACTGTGAGATGATCAAGCTGAAATTGCGGATTTAAAAAAGCTGTGTTCTCTTTAAATCCAATATGGTGTGAAGCAACATGCACTTAAGAGCAAACAAAATGCAAGTATGACATTTTGGTAGATAGTACCATAACTAGGATTGTGTCTATgatgttacatgttacatgaGATTTGTCAGTGTGCACCTACCATATGGTCTAAGATATTACGCTTCTGGTAATATTTTTCTACACCATGCAGTGTTCACTGAGATCTGCTGAACGAGACAtgcaaaatgaacatttcattGATACGTGGACAGAAAGCAAGACAGACTGAAGGTTTGTTGCTAATATCCCCCTCAGCCTTCATTTTAATGGGAGTGCGCTTATGGGAATTAATGCCAGTTTCATTATCTTACCAACAAATGTGTTCAATCCTTCCATTTCTAGAGTACCTCCAAATCGTacacaattaaaacatttttgtagcAGGGgcagtgaaaacaaaacaaactttaTGGGATGTCGACATGTTTTGTAGCTGATTATAAAGTGATTAGTCCAGCGTTAATGTAACTTTATGTGCAAATGAgtgtatgaaaaaatatttatatctttatGTCTTGTAGATAAAATGAAAGTAGTTTcgatcattttttaaatggtttgaaCTTTTGCTAAATTATGATACtcaaatgtatatatgtacatttataataaagatgtttttatatta

Function

symbol description
s1pr5a Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and regulation of metabolic process. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; eye; heart; pleuroperitoneal region; and somite. Orthologous to human S1PR5 (sphingosine-1-phosphate receptor 5).

NR:

description
PREDICTED: sphingosine 1-phosphate receptor 1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917171.2 True 2509 mRNA 0.42 2 11739620 11743073

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-69e1.8 LOC108278349 coding upstream 62159 11671706 ~ 11677461 (+)
hmgxb4a hmgxb4 coding upstream 68019 11662221 ~ 11671601 (+)
ankrd54 ankrd54,LOC107728844,LOC107563363 coding upstream 77500 11657529 ~ 11662120 (+)
foxred2 foxred2 coding upstream 82493 11648149 ~ 11657127 (+)
mcm5 mcm5,LOC107703892,LOC107670920 coding upstream 97563 11635325 ~ 11642057 (+)
rfx1a LOC108260824,LOC108432209 coding downstream 86970 11830043 ~ 11850336 (+)
grin2ca grin2c,LOC100329743,LOC107658706,LOC107758122,LOC107559244 coding downstream 118513 11861586 ~ 11919663 (+)
gaa gaa,LOC106601771 coding downstream 290813 12033886 ~ 12045504 (+)
cbx4 cbx4,LOC108260285 coding downstream 373366 12116439 ~ 12122136 (+)
cbx8a cbx8,LOC108261002,LOC107085518 coding downstream 386518 12129591 ~ 12132297 (+)
G209410 NA non-coding upstream 30684 11708728 ~ 11708936 (+)
G209392 NA non-coding upstream 105139 11633912 ~ 11634481 (+)
G209390 NA non-coding upstream 121386 11618035 ~ 11618234 (+)
LOC117598771 NA non-coding upstream 757327 10971721 ~ 10982293 (+)
G209069 tbl3,LOC107724722,LOC106601810 non-coding upstream 792079 10943255 ~ 10947541 (+)
LOC113528367 NA non-coding downstream 65188 11808261 ~ 11822910 (+)
G209775 NA non-coding downstream 276790 12019863 ~ 12021132 (+)
G209798 NA non-coding downstream 318496 12061569 ~ 12061782 (+)
G209863 NA non-coding downstream 390187 12133260 ~ 12133471 (+)
G209884 NA non-coding downstream 458165 12201238 ~ 12202277 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 161797 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 351600 11280080 ~ 11388020 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other upstream 958161 10349402 ~ 10781459 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 1751847 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 2676207 9061563 ~ 9063413 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 306334 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 392196 12135269 ~ 12140371 (+)
arhgap17b LOC108279379,LOC108432202 other downstream 415630 12158703 ~ 12190070 (+)
ndufb10 ndufb10 other downstream 624493 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1692308 13435381 ~ 13445686 (+)

Expression


Co-expression Network