si:ch73-281f12.4 (LOC108278921)


Basic Information

Item Value
gene id si:ch73-281f12.4
gene name LOC108278921
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11578560 ~ 11601412 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917186.2
ATCATCCAgcttaatattaaacatttatttacaccaGAGTCTACTCGCCCTGTCCTCTCGCGCATGACGTCATGGTGGGAGCGCGCTCTTGGAGCTGTTCACGTGACTTTTCAAACACGTTCACGCGCTCACTCAGAGACGCTCACTTCTCAACGGACAGCTCGAAGACTTCACTACTCACACTGAGTTCAGGTTCTCAGTGACAGATATAACCAACCTATTTTTGTTTCCTCTTCATTATTTTGGTTGGGAAACTCTTTCTCTCGAGGACAGAAAATTTCTACAGTGAAGTATTTTTCAAGAATGTAGCTGGAGCAGTGGGAAACATCCTGAACTGCCAGTGGAAATGGAAAATAGTGTCAAAGCGGACCACCGCGGTCTGAATCCTCAAACGAGTGGCTCTTAATGTGCATTTATATCAAATTCATAATTATTACACCTTAAAGCGTTCCGTACTTATCCCAGTCGTTGAACGAGGATCCAGTTGTGAGGAAAATGATCTCTGAGGAGCGAAGCAACCAGTTTAACAAGCAAGCGCTCGGTTTTCCTATTGGATTATTAATCCGGTCCCCGAAAAAACGGCTCGCAACGCTGGGGAGGAAGCCCAGCAATGGCTCTCTACAATCCAACACGTCTGAATGCACGACTCGATCTGCTGAGAGTGCTGGTGTCAGGCAGCCAGCCAGAAGTAAGATTCGCCGGCACAACAACAAGCTGGCCACAGTGTTTAACCGGAGTCCTCTTCTGCGGGACAACGGACCAGGGCGCCTTGCAGGAAATCTCGAGTTGAACGATGACCCCACTGAGCTGTCCAGTCAACTGTCTGCCCCAGGGATCTTAAAAATATTTGGCAGTGACATCTGCCAAGGGGCTAATTACAAGAGCGTGCTGGCCACGAATCGCTCCAGCGCCAGGGAGCTGGTTAAAGAGGCCCTTGAGAGaTACTGCCTTGAAAAGGAAGATCCAGATGCATATGTCCTCTGTGATGTAATTGGGCGGACTGGAGTAGCCCACCAGTGGCAGACAGAGTGCCTTCGGGTCATTGGTGACAACGAGAAACCCCTCATACTACAGTCCCTTTGGAAACCCAAAGAAGGATTCTGCAGAAGGTTCGAGATCCACAAAAGAACAAATATTGAAGCTCGTAATGccaaagacagagacacaatCACTGCAGGCCTCAATGCCCATGTGCGGAAGCTACAGAAAGTCCATTCAAGGGTTACGTCACTCTTTGTGGATGGGAGCAGTGGGGATATGGACAGCGTCGGTATCTGGAGGAGCCTGAGTGACATGGACCTCTCTGCCATGGGTAAGGAGGCCTGCAGGGCTAATAAAGGAGGCACTCTGCAGGAGGATCCGGAGGCTGAAGCTGACTTGGAGGGACGCTGCCTCATCACAGAGAAGGAAGAGACGGAAAGCAGTGatgacaacacaacacagtacTCCATCCACCCACCGTTTGATTTTCCCTACTTTCTTCTCCTTCAAGGTTACAGCCACAGACAAGACTTTGTGATCTACCTGATGAGTGGGAACAGCTGTGTGTTTGGCTGCTGTGCTGggcatggtgaggatggagagcagttgaaggtggatgttgtgCTCTATGCCCCTGATGTGCTTCCCCAGCACTGCTGCGTGCAGCACCTGGATGTTCCCAGAACCCAAGCTGATGGTAGCAGGAGAACTTCAACCCTACTAAAGCCCCTCCATGGAGCCTCCGTAACCCACAACGGTGTGCAGTTAAAGGGCGAAGCTGAACTCTTTCCAGGTGACCTAATAGGCTTGGGCCAGCATTACCTCTTCATGTTTAAGGACCCCACAGCACCTGACGTCCAGCGGATACCTACCTGGATGGCCAGTCTTTCTCCCCCAGCTTCCGCCTCACCCTGTAATGCCTGTGGTTCCTCTGTAAGAAGGCACAGGACCAGCAGGAGGGTCCCAGCCTGCTGGAGGGACCCGGACGAGAGGGTGCTTTCTCTTACCTATGAACTGCACCAAGAGGACCAGGTGCTGGAGAAGATCCTCACCATGGTGGACCCTAGAGGACCACAGCCCAAATTAATTCCGGCCTTCCTGCTCTGTTTGTGCATTCAGCATTCGGCTGCTAGCTGGGAGATGACAAACTTCCGCAAACTGTTGCTGCAATTCGCAAACAAGATCCAGCTTGCCATGTGGGAGAGAACAAAAGAGCTTGCAGCGCTTCAGCCAGACAATGGAGCAGGAGACGGACAGCCAGAGACGGAGGCGATTTGTCTCTTGAGCATGGCTGAGCTGATCCCAGGCCTGCAGCCACTCGTGTTATGGATGGCCAACTCCATTGAACTGTTGCATTTCATTCAGCATGAGGTGCCCCTTCTCCTGCCATGGACACAGCAAGATGAAGAGCAGGACAAAGAATTGTTAAATTCTCAGATCTTGTCTACACGTACTGCCAGTGAGGAGGCCATGACTGTCCTAGAGGAAGTCATCATGTTCACTTTCCAGCAGACTGTCTATTACCTTACAAGAAGATTGTATTCAGTGCTACCAGGATTGCTAGATAGTAACCCTTTCTCTGAGAATGGACAGCTGCGCATGCCTGTGGGTGTCAGCAACATTCTGGATGTCCTAAAGGAGGCATTGCAGCTGCTCAACACCTTTGAGGTTCACTCAGAGATATCCTCACAGCTCTTGGCCTATCTCTTCTTCTTCACCAATGCCTCACTCTTCAACATCCTTATGGAGAGAGGTTCAGGAGGTGGGTTCTATCAGTGGTCCAGAGGAGTACAGATCCGAGCCAACCTAGATTTATTGATGGACTGGACCCAGAGTGTTGGTTTGGGCGACCTGGCAGCGGAGTTCTTCCAGAAACTCTCCTCAGCGGTCAACCTACTGGCCACCCCTAAGGAGAATTTACTACAGaCCTCCTGGCTGTCTCTTAGAGCTGAGTTCCCTCACCTCAATCCAGCACAGCTTCATCATATGCTGAGAGAATACAGCTCCAGCAGGGCCTGTCCCTCCTGCTGGACCCCCTCCCCAGATGAAGCAGAATCTGCCCTCCAAACCTCTGAAATTCTGGAGAGCTTCGACAATCATCCTCCACTTATCCTGCCCAACAGCACCTTTCACTTGGAGCTGGGGAAGCCCATCACAGAGCTTGCTTTCTTGTCCCACCTTAAGAGCCTGCAGGAGTTCATCCACAACCTCCCTATCAACCAGATACAAAATGAACCACAACCACTGCAGGACAACAGCACTGACCTGATGGAAGCTACACAAATAGCATCTTCCCCTTCCAGCTCAGAACTGGAGTGCCTTGGGTCCATCAAAGCCACCAGTCCAACCACTCAATGTGGTTATATAGCAGAGCAACAGCAGTGCTTGTCTGCCTCACCTCCTCAGCTCAGAGGCTTCCACAATGCTCTAGGTTCCTATGAAGCTCTCTTGTCTCAGAAGCTGAAGAGCCTGGAGCTCCAGAACCGCTTGCCTGGGGAAACAGACCTGCGTGCACACAAGAGCCTGGCCTTGGACCCGTCCTGCCTACTCACCCCACCCAACACACCCCAAGGCCTGGAGCTCTCTGAACTCGAGGCCAGCCTACAAGAACAGGCGACACAAAACACCAAAGaGAATGGTCTTAGAGGAAATgcagatgagatgagagaaaTAGAAGAGGATGAGGACGAGCGAGATGAGGTGTTCACAGTAGATGTGTCAAGAGGACCTCATGGCCTCGGCCTGGCGCTGGTGGACGGACTGAAATCTCCACTGGGGATGAATGGGATATACATAAAGTCAGTAGTGCCAGGCTCGCCAGCTGCTCAGTGCCAGAAGCTCAGGCTTGGTGATCGTATCCTGGCTGTGAACGGAGTCAGTCTTGTAGGCATGGACTACCAGATTGGTAGGGAGATCATCCGGACATCAGGAGATTCTCTCCGGTTGCTAGTGGCCAAAACTGAAGCCAGAAGCAGTGGCAGGAGCTCCAGCACCAGATGCTAAAACAGTGGGGGACTCTCCTGTTTCCACTAAGGGTTTTCAGGACAAACTATTGGACTTTTTGTTCTTCCACCACCAAAATCAGACCTTTTACTCTTCCGAGCTGCTGGCTGAGGTCCTcagacttttgtttttaaaccaaaaaaaaaaatttcattggGAGTATCAATGGAATACCaaataaaataccaaaaattTACTGAAGACTTTAGTGAGACATGTTTTCTTCTAAgtttgggatttgaactccctGTGGGTGACGTTTTAATCATGTCTGCTTGGATGCAAAAAATGCATACCAAATGACTTAAAACCAATGTTTAATGCAGTAATTTAATTCAGTATTCATCTCTTTGTCATCGGCATTAAATGGAACACAATTCAGGTTTGTCTGGAAATGGCTGTGGCTCAGACTTTATCCTGTTGTTTGTTTGCCTGTTTTAGCATCAGTGAGCAAAACACTTATCCTACATATGCAGACACATATACGCAATATTACAGTAATAtcaatgaaaaattattttatatttttgttcaaTATATGTTAACCAAAGTCTGGCTTGTATCAAGTACTGCTTTTAATTTGTTCTGGTCAGAGCAAAGTATTTCTGTTGAATATGCTCAAAGCCATGGATCAAATTTCCAGCTACTAGTCTTGTCTGTTTCGCAGCAGGCATTAACGAGCATCATGTGATATACATTCAATGGTATATTTTTTCTCAGTGCCAGAGAAACAGTGTTACATCATTACTGATATGGTAGAAAAGTATTTTGTTTGTGATTTGTatattcttttctattctgtgtaatatttaaatgtgaaataaatattgctCATTTTTAAGGTG

Function

NR:

description
PREDICTED: ras-associating and dilute domain-containing protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917186.2 True 4829 mRNA 0.48 16 11578560 11601412

Neighbor

gene id symbol gene type direction distance location
unm_sa1261 unm_sa1261,LOC108274299,LOC108432226,LOC107726818,LOC107573384,LOC107674909,LOC107717497 coding upstream 17731 11538334 ~ 11560829 (+)
LOC113528662 NA coding upstream 41395 11537047 ~ 11537165 (+)
atp5pd atp5h,LOC103042933,LOC103361245 coding upstream 42868 11531521 ~ 11535692 (+)
ndel1b ndel1,ndel1b,LOC108432229,LOC105910967,LOC107670517,LOC107744966 coding upstream 69771 11500895 ~ 11508789 (+)
si:ch211-114m9.1 arhgap44,si:ch211-114m9.1,LOC108432230,LOC107672479,LOC107599321,LOC107670518 coding upstream 84678 11450559 ~ 11493882 (+)
gcat gcat,LOC107703894 coding downstream 24870 11626282 ~ 11633673 (+)
mcm5 mcm5,LOC107703892,LOC107670920 coding downstream 33913 11635325 ~ 11642057 (+)
foxred2 foxred2 coding downstream 46737 11648149 ~ 11657127 (+)
ankrd54 ankrd54,LOC107728844,LOC107563363 coding downstream 56117 11657529 ~ 11662120 (+)
hmgxb4a hmgxb4 coding downstream 60809 11662221 ~ 11671601 (+)
LOC117598771 NA non-coding upstream 596267 10971721 ~ 10982293 (+)
G209069 tbl3,LOC107724722,LOC106601810 non-coding upstream 631019 10943255 ~ 10947541 (+)
G209067 NA non-coding upstream 646132 10932059 ~ 10932428 (+)
G208916 NA non-coding upstream 721545 10855155 ~ 10857015 (+)
G208911 NA non-coding upstream 749647 10827025 ~ 10828913 (+)
G209390 NA non-coding downstream 16623 11618035 ~ 11618234 (+)
G209392 NA non-coding downstream 32500 11633912 ~ 11634481 (+)
G209410 NA non-coding downstream 107316 11708728 ~ 11708936 (+)
LOC113528367 NA non-coding downstream 206849 11808261 ~ 11822910 (+)
G209775 NA non-coding downstream 418451 12019863 ~ 12021132 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 737 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 190540 11280080 ~ 11388020 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other upstream 797101 10349402 ~ 10781459 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 1590787 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 2515147 9061563 ~ 9063413 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 447995 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 533857 12135269 ~ 12140371 (+)
arhgap17b LOC108279379,LOC108432202 other downstream 557291 12158703 ~ 12190070 (+)
ndufb10 ndufb10 other downstream 766154 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1833969 13435381 ~ 13445686 (+)

Expression


Co-expression Network