LOC113528569


Basic Information

Item Value
gene id LOC113528569
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13241850 ~ 13268174 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917193.2
taAAGCCAGTCCCTCCTCTTAAAACATTAGGACTCCGCGTCCTGCCCTCATTCAgGCTTGGAATGGATGAGGCAGAAAAGTATCAGCAGAGGCTGCAGGCCATTGCAgAGAAGAGGCGAATgcaagaagaggaggagaaagtcAGGAGGGAGATGGAGGAAGAGCGGTTGAAACTTGCTCAAGACAAGaGGAAGTCTCGGAGAGAGCAGTGGCTGATGGAAGCGACCCCCAGCAGTGCTGAGGATCCTAAACTGCAGTCTGTGGTTTCCACTCCTCAGACAACAGAGCAGCGTGCGGAAGAAACACAAAgctcagagagacagatgaaaacAGACGTGGAAAAAAGTGAGACCATGAATGAAGAATCTTCACAGATTGGGGAGAATGAGCCTTCAGTCCATTCCACAGACAACACAGAGAAGCCTGCGCAGgaaTACctgggagaggaggagagaaatgTGCTTGGGGTgttggaggtggaggtggaagtGGAGGGAAACCTGCTTTCAAAAGCAGCACAGGAGGATACCGAGGAAAAGAGAAATGCAAAGACAGAAGAGCAAGAGGTTGCTCAATTAGCAATGGATCTACCCCACCATTTATTACAGCATAATAAGACACCAGATGAGGCCCTTAATTCTTTAGCTGATCGAAAAATGGAGCTAATTATGGCAGAAGATGATGCTGAGGTAGAGGAGGAAGAATGGGAGATGGTGAATTGTAGTCCAGAAGAAGGCCTGGACATGGTGCTGACATGTGACTTAACACAGGCTCAGACAGATTCAAGCTTGGGTCATAAAGGTGATGGAGCTGTTCTGAAGGTGGAGCAGGTCTTCATCATGGACGAAGAAGAGGATCTAGAGATTGGTGCATCTGAGGTGCTGAGCCTTGTTGTGGCTGAGAAGTCGTCTGATCTTCAAGACACATCCTGTGAATTTCAGTCAGAAAGAAGCCAAGAGGAAAGACCTCCTGAGGGTGCATTACAAACTCCTTGTTTTGGAAAAGGGGCACTTGTAGGTACATCTGCCCCTTTGCAGGAGCTGAGTAATGTGTCAGGTATAATTTCTGAGGAGTCTCCAGAATGTAAACAGCCTCTGCTACACCTTCCAGTACATACCTCACAGGCTGTAAAAGAAATTCTTGGAGATAATACAGAATACAAAGGGGACCAAGGTATATCTGCAAGCAGGATTGTAAAAATGGAATGGAAGGAGACATCAGGTCCTGAAGATGAAGTGTTTCAATATATCCCAttagatagaaaaagagagaaatctcCACCCGTGTTGCAGAGGGAAATGGTTGCACAAAGCATTGAGCAAGAGTCAGAAATACAAACACTGATGCCTCCTAGTGCAACTCCAAATAGAGCAGAAACAGTCACCTcgacaaaaagaaagacttgCCACTGTTGCACTGTCATGTAAGCAAGCATTCAAACAGAAAGCTCATGTTTTCTCTTTCGTTCTCTCTTTTATTAGATTTCCTGTCTTAGATTCTCTATTTCATTGCTCACTCTGAATTGTAGTATATGAGTACAGTTTTCTTCCATCTGCATTAATAGATATAAAGTGTTGGGAGGCAAATATCACAAATATCTGAGTAACCCTTATCAGTTATCATTGTTGCCCCCTGCTGGACAGATTTTTTGTAATGAAAGATGATTTATAAAGGAGACAAATAGGATTATCCTGCCTCGTGCCCattgttcctggaataggctctggatccaccgtgatcctgaccaggataaagtggttactgaagatgaatgaatgacaaatAGGGTTGTGTTGCCTAATTGATTTTATGTCATATCCTgtcatttctattttaaatgaagttaTTGATATTTGTatgaacatatataaatatcatatataCTTGATTTATCATGtgtggtataaaaatatatttgatttgttaGGCTGAAGTGGAGTATGACGAAGCACATTTATGCCTAATCCTAAAACAATGTGTGTTAGCAAACAAATACTAGTATTATGCAACAAACATTATGCAATGTGACATGAGATATAAAGATTATGTGCAAAGTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines molecular_function

KEGG:

id description
ko00040 Pentose and glucuronate interconversions
ko00140 Steroid hormone biosynthesis
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko00983 Drug metabolism - other enzymes

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917193.2 True 2057 mRNA 0.42 7 13241850 13268174

Neighbor

gene id symbol gene type direction distance location
nfil3-6 LOC108279453 coding downstream 14975 13223244 ~ 13226875 (-)
nfil3-2 nfil3 coding downstream 21828 13210369 ~ 13220022 (-)
gcdhb gcdh,LOC107718595,LOC107653471,LOC107563244 coding downstream 137012 13096259 ~ 13104838 (-)
ilf3b ilf3,LOC106601349 coding downstream 177867 13047319 ~ 13063983 (-)
trnas-aga_12 NA coding downstream 415311 12826458 ~ 12826539 (-)
swsap1 swsap1 coding upstream 164053 13432227 ~ 13435356 (-)
gadd45gip1 gadd45gip1 coding upstream 226812 13494986 ~ 13498163 (-)
nme4 LOC108276282 coding upstream 393989 13662163 ~ 13669491 (-)
xpo6 xpo6 coding upstream 402735 13670909 ~ 13695259 (-)
antkmt fam173a,LOC108276247 coding upstream 428439 13696613 ~ 13702527 (-)
G210461 NA non-coding downstream 69784 13171841 ~ 13172066 (-)
G210436 NA non-coding downstream 146113 13095520 ~ 13095737 (-)
G210435 NA non-coding downstream 146373 13095244 ~ 13095477 (-)
G210427 NA non-coding downstream 162905 13077999 ~ 13078945 (-)
G210412 NA non-coding downstream 206998 13034128 ~ 13034852 (-)
G210570 NA non-coding upstream 42359 13310533 ~ 13354585 (-)
LOC113528601 NA non-coding upstream 101280 13369454 ~ 13372938 (-)
G210607 NA non-coding upstream 136965 13405139 ~ 13405357 (-)
G210640 NA non-coding upstream 177562 13445736 ~ 13446438 (-)
LOC113528343 NA non-coding upstream 195365 13463539 ~ 13475462 (-)
tom1 LOC108260160 other downstream 682637 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 902581 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 926352 12297776 ~ 12315498 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 1540678 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 1593853 11642157 ~ 11647997 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 122442 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 127292 13395466 ~ 13399225 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 572992 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 725702 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 735995 14004169 ~ 14006512 (-)

Expression


Co-expression Network