fam20ca (LOC108274115,LOC108412745,LOC107713951,LOC107584184)


Basic Information

Item Value
gene id fam20ca
gene name LOC108274115,LOC108412745,LOC107713951,LOC107584184
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 10748146 ~ 10798178 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917195.2
CTTGATTCAATGCATTAGTGCAATCTATTGGTGATAAAAGGATGCATCTGTGCTTTAACGTTCACTGAGGAAACGGGCTGCACTGATACCATTTCTTATTgtgctttgctgtttttttttttttttttcttcagtgggATGGAGGGCAGCTCCGGATTTATAGCTCGCcacctttaaaaacatttagacTGTAGGTGTGCAGGAAGATGCGCGCTATATAGCTAATGCGGATTAATAGAAAATCATTTTGATGCATAATAACATGACCTGGACGCAAAGAAAGAATCATAGCTAAAATTCAAACAACGCGGATTACACTTTGAAATGAAAGCAGATGCATATCCAAGAAGCACCGCGCGGTGTGTTTTCCTGTCAGCATCCTTAAAACACCGGTAATGTGGCGCTCGGATTGATCAAACTAGCCGCTGTTTGTAAGCATCAAAATGATCCTTTTCCGCAAATTCCGCGTGCTGCTTCTCATGGTCTTTCTCGTAGCGTGCACCATGCACATCATGATAGACTTGCTGCCTAAACTGGAGAAGAGAGCAGCGGGAGCGGACTCTGCAAACTCGGGCTGTTCCTGCGCGCACGAGCCGAGCGAGGCGCCTCGCGGCCGGagcaaacagcagcagcagccgcaggcgcagcaacaacagcagcgcGCGAGGTCCGGAGCACCGGCGGAAGCGAGCTGGCCCAACAAGCACACGCTCAGAATCCTCCAAGATTTCAGCCAAGAGCCCAGCTCGAACCTCAGCTCACAGTCTCTGGAGAAAGCGGCGGCCACCGGGGACAAGACGGACCCGATCCGAGGAGTGAAGCAGCGCGCGGCGGACTCTGACAGCCCGAGGAGTCTGATGAAGGAGGCGGCGAGTGGAAGCAAGCAGGCTAACAGAGGCGCCTCCAGACTCGCAGCTCTCTACCAACACCCGCTGTACAACAGCGAGCTGCCGCCGCTCACCGACGACGACACGCTGTTCAACGTCAATACGGACATACGGTTTTATTCCAAAGCCACCGGAAACCAGGAATGGCACCATGAGGGAAATGAGGAAGAGGAGTACAACCCGACCGGGGAGGCCACTGCTGAGTCATACCCCAACTGGCTTCGCTTCCACATTGGGATTAACCGCTATGAGCTCTACTCCAGACACAACCCTGTAGTGGAGGCCCTGCTCAAAGACCTGCAGGCCCAGAAGATCACAAGCGTAGCTATGAAGTCTGGTGGCACTCAGCTGAAACTCATCATGACATTTCAGAATTATGGCCAAGCTCTCTTCAAGCCGATGAAGCAAACCAGAGACCAAGAGACCCCCCCAGACTTCTTCTACTTCTCTGACTTTGAGAGGCACAATGCCGAGATTGCAGCATTTCATCTCGACAGAATTCTGGATTTCCGACGGGTTCCACCAGTGGCTGGCAGACTAGTAAATATGACACGGGAGATTCGAGATGTGACCCGGGACAAGAAGCTCTGGCGCACATTCTTCGTCTCTCCAGCCAACAACATTTGTTTCTATGGTGAATGTTCATACTATTGCTCCACTGAACATGCCCTGTGTGGCAAACCTGACCAGATTGAGGGCTCACTGGCCGCCTTTCTGCCTGATCTGGCCCTCGCCAAGCGCAAGACCTGGAGGAACCCCTGGCGCCGCTCATACCATAAGCGCAAGAAAGCTGAGTGGGAAGTGGATCCAGATTACTGTGATGAAGTAAAGCAGACTCCACCATACGACCATGGCACCCGTCTGCTGGATATCATGGACATGACCATCTTTGACTTCCTTATGGGTAACATGGACCGTCACCATTATGAGACTTTTGAGAAGTTTGGCAACGAGACATTCATCATCCATTTGGACAATGGCAGAGGATTTGGAAAACACTCACATGACGAAATGTCAATCTTGGTGCCTTTGAGTCAGTGCTGCAGGGTGAGGAGGTCCACCTACCTGCGGCTTCAGCTGCTGGCTAAGGAGGAGTACCAGCTGAGCTCGCTGATGGAGGAGTCTCTTTTGCATGACCGCCTTTCTCCCATACTCATTAAGCCACACCTGCAAGCTCTGGACCGGCGCCTGCGCCTGGCTCTAAACGTGCTGGCCGAATGTGTGGAGAAGGAGGGCTACAGTGCTGTAGTGGAGGATGACATGGAGCACCATCAGACCTCTCGGGCGAGGTAGTGGAACCCGGACCTACACCATGAGCCTCGGGCACGTTGTGCTTGAGACGCATGTTTGAATTCAGTGAATTCCAAGAGACTCACCACCAATGCCTCTGAACTGCCACTCTGCATACGGATATGTCTGGTACGTCTACAGATGTTGACCAGACGTGCTCCCGCTTTCTTTCGCTCCCCACATTCAGACATGCTCCCCACGGACTTTTTAAGACTCTTAGACCAGAGGCATTACGGAAAAGAggtccattttcttttcttttgatgCTACCCATAAGCACCAGGGATTgtattttatgttcatttgatttgtttctttttaccTTTGAAGTCCAAGGCTTGCATTTTAGCCATGGTGGAAGCTGCAGCACATATTGTTTTGTTACACCCTGCTTTTTATTACATGATTGGTTGTGCAAaactaatttattaattttgcatattttaatcatttcaatATATTAATGAGATGGTAGATGTACAGAGATGTATAGTAGAAGCACAGAGAGACTTTTGACCAGTAATACAGTGATCACCTGTTTTGTTGCTTGAGATAAAAGCCAGTTCCTTGATCCGGCTAACAGACCAGTCTAACAGACTGGTTCTCTGGAGCAGGTGTGTTAGATAAGGTTTCGGGCTGAATTCCGTTCAAGGAACAGAGCTGATGATCACAGTATTAGGCAATGTGAGACTGGAATAAGCGGTGAACTTTACTTACTACAGTTAGCATAGGAATTATAGATATATGTATGGTTGCCGATTTATTTTCTATGTAGCCAACTGCGCTCTGTGTATGAGATATTTTGCCTAAAGATACATTGAAGCTTTAAGAGTAGTACTGCAGTGCAGTGCTCCTCCTGTGAGGACCCGTATATGACgcctctcctctctgtgtgtgaccTGATTTGGTTTTCCTAATCGCTTTCGAAAGCTTACATAGATGCATCTGCAAGTCGGACTCCGTGCAATCCAGTGTTAAGTATTTTTTATTCCATGTTGTGAACTCTGCATTTCCTCTCTCATTAGAGTTATTCAGCGCTGGAGTGAGCATGACATTTAGGGTTATTCAAAAGTGCACTCTTGGTAGGAACTTTGTGGAAGAGTGCAGAATGACTCTAattggtgttttttgttttgacacTGCCTCCCGTCAGCGACACCATGCTGAATGCACCTGTTTCCTCGGCATGGGGAGCTTTGCCGCTCCCCGATGCAACGCTGCCACGGCTTGTTAATTCTGTGTCCTTTTCCGTGCCATACATGGGCAAGCTGATCCTTTCTCACTGGCTGCACTCTTAGTTCTTTTTACCATATATGAATTAGTAAGCAGAATTCACAGCTCTGCATCAGTGTATATAAAgcgtttgtgtttttgtatgatAAAACAAATTATCTGTCTGCTAGAGTTGTTACTAGAAATTTTTCAGACTAAAGACTACATCATAGTcattgcaaatatttttttcttttagaagaTTCAGCATCACCAGATTTagagatttagatttttttttaatcactttaaatCAGTTGTGAATTGTTTCCTAAACTATGGCCAGAAGGCAAGAGAGTGCCTTTATCATTACTCATACTGACACAagaaaaacaagattttttccattttatgtGAAACTATTTCAAGACACtatgggccatattcagagttaagtatgaatgaagatgaatgcttaggcatgttttctttacaggaaagTGCATCGAATTAACCAAAACATTGGAAATATGTTAACAGCGAATTAACCAAAACATAGGCAAAAAATTAACAtcgaattaacaaaaacattggcaatatattaataattcaaactattaaacacacactagtAAAAGCTTGATAAAACAGATTATATCCATGATCTAATACATTTCATGTGTGATctcatgacctcgatttagtatctcatggcATCTCTTGCACAATAAACTGTCGGatcacaaaaaagtaaataaaatgcaaaataataggatgtgctggatcacttttataagctgctggaagccattttgttaaattatatatccaaatttgcagtgattaa

Function

NR:

description
PREDICTED: extracellular serine/threonine protein kinase FAM20C-like

GO: NA

KEGG:

id description
K21958 FAM20C; extracellular serine/threonine protein kinase FAM20C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917195.2 True 4236 mRNA 0.46 10 10748146 10798178

Neighbor

gene id symbol gene type direction distance location
bri3 bri3 coding upstream 263940 10475354 ~ 10484206 (+)
lmtk2 lmtk2 coding upstream 299461 10426059 ~ 10448685 (+)
helz helz,LOC107691233,LOC107665819 coding upstream 406431 10298887 ~ 10341715 (+)
LOC113528384 slc25a17,LOC108412891,LOC106601749,LOC107666095,LOC107743042,LOC107548713 coding upstream 525272 10215045 ~ 10222874 (+)
LOC113528352 snu13,snu13b,LOC103040872,LOC101154660,LOC105910236 coding upstream 552940 10192804 ~ 10195206 (+)
LOC113528286 rai1 coding downstream 11276 10809454 ~ 10846584 (+)
drc3 drc3 coding downstream 101461 10899639 ~ 10909807 (+)
gid4 gid4,LOC107724729,LOC107555661,LOC106601817,LOC107559524 coding downstream 113279 10911457 ~ 10919978 (+)
noxo1a LOC108261250 coding downstream 139125 10937303 ~ 10940999 (+)
LOC113527977 LOC108258077,LOC106964020,LOC103155899,LOC107091756,LOC101062683,LOC105938884 coding downstream 164797 10962975 ~ 10966262 (+)
G208783 NA non-coding upstream 405922 10341908 ~ 10342224 (+)
G208701 dxo,LOC107752708,LOC107666098,LOC107691245,LOC107743041 non-coding upstream 521643 10225583 ~ 10226503 (+)
G208700 NA non-coding upstream 526607 10221283 ~ 10221539 (+)
G208488 col1a1a,LOC108279263,LOC107585052,LOC107740634 non-coding upstream 686181 10039409 ~ 10061965 (+)
G208504 NA non-coding upstream 865019 9864977 ~ 9883127 (+)
G208911 NA non-coding downstream 28847 10827025 ~ 10828913 (+)
G208916 NA non-coding downstream 56977 10855155 ~ 10857015 (+)
G209067 NA non-coding downstream 133881 10932059 ~ 10932428 (+)
G209069 tbl3,LOC107724722,LOC106601810 non-coding downstream 145077 10943255 ~ 10947541 (+)
LOC117598771 NA non-coding downstream 173543 10971721 ~ 10982293 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 760373 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 1684733 9061563 ~ 9063413 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 1790046 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 2739735 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 2894637 7853191 ~ 7853509 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 481902 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 768941 11567119 ~ 11577823 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 1251229 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 1337091 12135269 ~ 12140371 (+)
arhgap17b LOC108279379,LOC108432202 other downstream 1360525 12158703 ~ 12190070 (+)

Expression


Co-expression Network