LOC113528572


Basic Information

Item Value
gene id LOC113528572
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4970822 ~ 4974830 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917196.2
AGGAGGCTTACTTCTTCTGGCAGATTATGGACTTGTTCTGCCGTCGAAATGGAAAAGTGATGATGGCTCAAGCAGCCACAATCCTCTTCAAGGGCTACAGCTTACTCAGGAAGAAGCTGAGAGGAACTCGGAACCTGAAGAACTGGTGTATTCCTCTGGGGCAACTTTTGTGCTCCTCCACCCCAGATGATGAGCATAGAGAAGCCGTGATGAAGATGGGAGATGATCTTGCCTTCAGAGGACTGACATATGCAACGCACATCTGCTATGTGGTAGCAAAAGTTGAGCTGGGGACAGCTGGTAGTCAGTTCGAATTGATCGGATGCAACAGTTTGCCATTTGGTCTGACAGTCCTGACTGCAGCCGTTGAGAGAACCGAGGTTTACGAATATGTGCTGTCGCTGACCTCAGGCCTGGCCCAGCCAAACTTCCAGATCTTCAAGTTGTATCACGCCAGCCGGCTAGCCCAGGCTGAATTTCCTGATAAAGCCCTTCAATACTGTGAGACCATCACCAGGGCAGTCATCTCCTTCCCCAGCAGCATCAAAAGGAGCTTTATTGAACGGCTCATTTTGCTGTCTAACAATGTGCGAAAAGGGGAAGGAGAAGAACCCATGTGGCTGCTAGAGCTTTGCCAGCTGCACAGAGTCAAAGTTGCTGATGCAAATGCTAATGCTGACCGAGAGCAGAACTCAACATCTACCAGCTCTGAAGTGGAGATTAAGTTTCAGAACTCAGAAAGTGGCTCGATGAGTGACGAGACCCCCGCTCTCCAGTCTACTGATCTGGAGCTGCAAACTGACACAGAGGTTGTGTTTGATTCGCGGTACACCATGGGAGAGCTGCTGGGGAAAGGAGGCTTCGGGTCTGTCTATGCAGGCATCCGTAAGGAAGATGGGAAAGAGGTTGCTATTAAATATGTGGACAAGGATCACTTCAGCAGGCATGTGATCATTCCCGGAGAGACGTGCGAGCTGCCTGTGGAGGTGGCGCTAATGAAGATCGTGTCCATGCCACCTCGCTGTAGCAACGTGGTGGAGCTGCTGGAGTGGTTTGACATGTTCGATTGCATCATCTTGGTCCTGGAACGACCCAGCCCCTGTATGGACCTCAGAGAATTCTGTAAACTTCAGAATGGTCGTCTGTCTGAAGCACAGACTCGAGACATCATGCTGCAGGTGGTTCGGGCGGCTCGGCACTGCTGTGACCGTGGAGTGTTACATCGTGACATCAAGGCCCAGAATCTACTAATCAATACCGAAACACTGCAAGTCAAACTGATAGATTTTGGCTGTGGTGACTTGCTGAAGGACAGCCCGTACAGAATGTATGCAGGCACTCTTGCTTTCTGTCCTCCCGAATGGGTGATGTTCAAAAGGTATGAGGGCATTCCTGCTACCATCTGGGGTCTGGGTGTACTCTTGTACAACTTGGTCTGTGGAGACTACCCCTTTAAATCTGAGAACGACCTTGAAGTTGGGCACCTGAAATTATGTCCTGGTGTGTCTCGAGattTCCTCGATCTGATGATGTGGTGCCTGGAGCTCAAGCCTGATTTGCGCCCATCTTTCGAGGACGTCACCAGGCATGAGTGGTTCACGGACAGAGTTCAGGACAAAGTCCAGatcCCTCTTGGAACCAAAGATGTGGTAACACcctgatcaaaaaaaaaaccaacatataaaacatatcacatattacataacattatattacaaaatatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917196.2 True 1725 mRNA 0.49 13 4970822 4974830

Neighbor

gene id symbol gene type direction distance location
fmnl1a LOC108278868,LOC107654518,LOC107601298,LOC107721528,LOC108427416,LOC107720013 coding upstream 200326 4737041 ~ 4770496 (+)
ezh1 ezh1 coding upstream 421344 4527593 ~ 4549478 (+)
moto meioc coding upstream 744777 4215915 ~ 4226045 (+)
ccdc47 ccdc47,LOC107674171,LOC107729550,LOC107721963,LOC107658463 coding upstream 839347 4120854 ~ 4131475 (+)
kcnh6a kcnh6a,kcnh6,LOC108279946,LOC108427397 coding upstream 866068 4057751 ~ 4104754 (+)
wnt9b wnt9b,LOC108259511,LOC107721476,LOC108427420,LOC107601233 coding downstream 7196 4982026 ~ 4991251 (+)
map3k14a LOC108259239 coding downstream 83092 5057922 ~ 5078370 (+)
rps11 rps11,LOC107674708 coding downstream 114433 5089263 ~ 5091817 (+)
LOC113528651 NA coding downstream 115368 5090198 ~ 5090283 (+)
LOC113528648 NA coding downstream 115690 5090520 ~ 5090604 (+)
LOC117598842 NA non-coding upstream 45140 4923914 ~ 4925682 (+)
G205315 NA non-coding upstream 297793 4671760 ~ 4673029 (+)
G205306 NA non-coding upstream 407168 4563408 ~ 4563654 (+)
G205299 NA non-coding upstream 418957 4549561 ~ 4551865 (+)
G205303 NA non-coding upstream 432667 4537498 ~ 4538155 (+)
G205454 NA non-coding downstream 105157 5079987 ~ 5081204 (+)
G206157 NA non-coding downstream 654628 5629458 ~ 5629659 (+)
G206212 NA non-coding downstream 760540 5735370 ~ 5735607 (+)
G206221 NA non-coding downstream 780022 5754852 ~ 5756939 (+)
LOC117599005 NA non-coding downstream 894032 5868862 ~ 5869806 (+)
psmc3ip psmc3ip other upstream 249354 4712873 ~ 4721468 (+)
retreg3 fam134c other upstream 259506 4692477 ~ 4711316 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other upstream 300176 4620218 ~ 4670646 (+)
limd2 limd2,LOC107674139,LOC107658411 other upstream 984538 3966733 ~ 3986284 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other downstream 28718 5003548 ~ 5014516 (+)
G206166 NA other downstream 682782 5657612 ~ 5660848 (+)
tmem98 tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031 other downstream 914722 5889552 ~ 5898200 (+)
si:ch211-198p11.6 LOC108276725 other downstream 1155950 6130780 ~ 6134572 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other downstream 1185504 6160334 ~ 6175366 (+)

Expression


Co-expression Network