rrn3 (rrn3,LOC104947155)


Basic Information

Item Value
gene id rrn3
gene name rrn3,LOC104947155
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3485744 ~ 3500428 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917218.2
TCCTGGAAGAGGACGCGTCGTGATGCTAGCCAATCCTCGCGcaggtgggcggggcttgtcGGAATACGGGTGTGGATGATCAGAACGTGTCTGCATGTCCGTCTGCTGTGTTTACTTACAGCTTCAGGTGAGGGCAGTTTATTATTCTGTGGTGTGTAGCGCTGTTTGAATGGAGTTGTGTGGACATGTCTGGACTTGTCCTCGGATTATAAATCGAGGTAAATAGAATTGGGTTGGATGTTAGCACGTGCGCAGTGTCAGCTGTAGTAACAACACAGGAAGGAGCTGCTGCTCAGGAGTTGTGTTTTAGTTTAGAGTTTAGAAATCCAGCATGGAGGTGGAGAGAGATTTCATTAACACTCCTCCACCCAAAACTGTGCGGTTTGGGGACAGTGTTGCCAACACTCTGGCCAAAGTCAAGCAGGGAGACACAAGTGACTATGAGATGATAAAGCATCAACTTTCAGACCCTGATATTAAGGACGCTCAGATCATCAGCTGGCTGCAGGAGTTCAGGTCGTGCGTCACGCAACTCGGCAAAGAACACGAACAGCTGATCTACATGGTTCTGAGGCTGCCGTGGCTCGGGCGGAGTGCTGCCGTGGTGGACGAATACCTGGCGTTCCTCAGCAACCTCATCTCAGCTCAGACCGTGTACCTGAGGTCGTGTCTCAAAACGCTCGTCTCTAATTTCACCCCCAGAAGAGTGAAAATCCAGGAAGGGAACGTGGACATATCGGATTCGGACGATGACgatgagaacctGCCCAGGATATTCGATCACTGTCATCAAGCCTTACAGATGATCGCAAGATACGTTCCATCTACCAGCCGGTTTCTGATGCCAATCCTCAGTGATAACTTCCCTTTTGTACAGAAATCATCCAGAACGCTGgaATGTTACGTTCACAACCTGCTTCGGATCACGGTCTATATTCCGGCTCTGAGACGGGACGTGTTGGAGCTCATCATCAGCAAGATGCTCACTCTGGATGTGAGCGCCCCCCGCAGTGAGATCGAGGAGGTGGAGAGTTTGAGAGAGCAGAATCACGCCGCAGGGGCTCAGGACGACTTCCTGTTCAACATGGATGAGGATGAGAGCTCTCCGAATGATGGCGGTCTGCTGATGTTTCACTCTGTAGCTGAGAGACTGGACACGCTGATGTTAGTGCTGCTGAGCTTCATTAAAGACATGAGCCACGTTAATGGTGTGTTGGATGTCGAGAGAGTCAAAGCTCTGTACAGagatctggtgtgtgtgtttgataagCTGGTGCTGCCCACACACGCTTCCTGTCACGTGCAGTTCTGCATGTTTTACCTGTGCAGCTTCCGCCTGGGTTTAGCTGAAGCCTTCCTGGATCACCTGTGGAAGGTGCTACAGAGCCCGTCTCAGCCCGCTGTCCTCCGCCAGGCCGCCGCCGCCTACATGGGCAGCTTCCTCGCCAGAGCCAAGTTCATTCCCATAGCGACGGTGAGGGCATGTCTGGACCTGCTGGTTCCTTGGCTTCATCTTTACATAGACAGCCAAGATTCGGGTTCTAAAGCGTTCTGTGACGTTTCTCTGCACGGGCCGTTCTACGCTTCGTGCCAGGCCGTGTTTTACACACTCATCTTCAGACACAGAGCCATCCTGGAGGGCAACATGAAGAAAGgattggCCTATTTACAGAGTTTGAATCTGGAGCGGATCGTCATGAGTCAGCTGAACCCGCTGAAAGTGTGTTTGCCAGCCGTCACCAACATGTTTGCCGCCATCATGAGGAAATATCAGCTGGTGTTCTGCTACACGATCATCGAGCGAAACAACCGCTGCATGTTGCCTGTAGTGAGGAGCTCAGTGGGCGGAGACTCTCTCTCCACCAATACCAATCCTCTGgacacatttttcccctttgATCCGTACCTACTAAAGAGATCTGGACATTATTTTGAATCGATCTATCAGGTGTGGGAAGAGCCGAGCGACTGCATGGCAGCTCCGAAGAAGGAAGTCACAAAAAGTTCTACAGAAGAAGAGGACGACTTCCTCCATGGTGAAACTCCTCAGGCTGACATGGTGATGGGGTCGTACGAGTCGCATCTCCGCAGCCCCAGCAGTGTGGGCTCTCCTCCCATTGCCTTCCTCCAACGACCcttctgatacacacacacacacacacacacggactgAGATGATCTGCTTTCTTCAGACCCCCATGAAGGGAATCTTTTGTAGCACTCTCCTTCTTTACACACAACCTCTCAATACAGATCCTTCAAGAGGACTTGGGAGGAATTTCTATACAATTTATAACTTACTAATCAAGAGGTTGGATGACACAGGAATCAAGAAGTGTAAATGAcgagatttaatatttaaaaaagcacaaatctTGTCCGAGTGCTGAATTGTGTTGCTTGCCTGATAGGATTTCTgagagggtttttttcccccaattcaaatgcatttaaatgttcAAAAATTTTCAGTGCTAACAATAGCCAGCTGGCTAACTTTATCTAACCTGACTGGaattctgagaggatttttaaaaattaacattcACTGCCATATTCACTGTCCATGATCTTaacagctaatgttagctagctagttaacaggAGCTAATCTGATGCTCAACTGTTCAGCTAGCTCTCACAAGCTAACCTGAAAGGATTTCTGAGTGGATTTTTCCATTCACATTCATAAATGTGCATAATGTTCAAGAATACTGATGGCAAggtagctaacaagctaacctgacaggaatTCTCAGGTTAtacaaaaatgttaaactgtATATGCAATCCTTATGTTGCTCTGCTAACTCACGTTAGCTAACTTGACATGTTTTCTAAGAGGTTTTATGAATTTCCATAACATTCACTGTTTGCCGTGTTCAAAATTTTAACAGCTAATGCTATTTAAGTGGCTAACAGGacctaacctgacaggatttctgagagaattttTTCAAATCCGTACATTTTCATAATCTTCAGGGCTGGTGAAagcatttatattcataaatgttattAATCCCCACAGCATCAGTGCTGGTCAGCTAGCTCACATGAGCTAACCTGCtaggatttctgacaggatttttaaatcatatttataaatgtttctaACATTCACTGTTTGCCATATTTGGTGTTCATAATATTGCTAGTTAGCTGGCTAAGTACGTGAGctaatctgacatgatttatgacAGAATTTTGaagttatatttataaaagttaATAATCCTCACAGCTAGTGCTAGTCAGCAAACATGGAAGGTTCATGTACACACTGCTAGGTTGCTCTGTTTCTGTATCTTTGTGCATCTCCATCTTtcttcaggctttttttttttatattgtaatgAGGTAAAATACAGAAAGATCTCATCTATAGCACCTAGTGGTGTGTACTCGAACTGTTAgttaataaaactttaaattgACATTTGAGTCCAGTGAGGCAAGTAGTTTTGGTCatctttgtaatatatttttattatttattatatgtataggtctattttaaaaagacaaacttTTCCTGCGTAAGTCATGCTCAGATTCAACTAGCATTATTGTTAAgaggaattattattttttttttttactacattaTAATGCTACTTGCTTCATTTCATTCAGTAAAGATTATCAAGTAAAGATTCGGCTAAATGCTAGgagaaaacatgtaaaaaaaaagaaataccctgcttattaatattatggacttttgtttaattaaacccATTGGTATAACTCAGATCTGGATGTTTTCAGTTATTTAAAGGGATACAGGAAACTGTAAATGTGCTCactgaaatggaataaaaaaaaagattgtgccAGAA

Function

symbol description
rrn3 Predicted to enable RNA polymerase I core binding activity and RNA polymerase I general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase I promoter. Predicted to be active in nucleus. Is expressed in midbrain; segmental plate; and somite. Orthologous to several human genes including RRN3 (RRN3 homolog, RNA polymerase I transcription factor).

NR:

description
PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1

GO: NA

KEGG:

id description
K15216 RRN3, TIFIA; RNA polymerase I-specific transcription initiation factor RRN3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917218.2 True 3842 mRNA 0.44 17 3485744 3500428

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-72e1.6 LOC108274424 coding upstream 1996 3480238 ~ 3483748 (+)
mpv17l LOC108256073 coding upstream 8419 3470453 ~ 3477325 (+)
LOC113528556 LOC108277488,LOC108437999,LOC107721491,LOC107720004,LOC107590377,LOC107688123,LOC107601225,LOC107654455 coding upstream 132892 3317323 ~ 3352852 (+)
LOC117598751 tlr-5,LOC108275971,LOC108275978 coding upstream 188148 3290562 ~ 3297596 (+)
LOC117598988 tlr-5,LOC108275978,LOC108275971 coding upstream 196303 3276048 ~ 3289441 (+)
ppl ppl,LOC107720077 coding downstream 40682 3541110 ~ 3560678 (+)
dus1l dus1l,LOC107590391,LOC107654489,LOC107688109,LOC107601270 coding downstream 130011 3630439 ~ 3639871 (+)
zgc:86896 LOC108259475,LOC108436955,LOC107590453,LOC105899990,LOC107719989,LOC107601274,LOC107654493 coding downstream 185050 3685478 ~ 3692367 (+)
wipi1 wipi1,LOC107719990,LOC105899989,LOC107654490,LOC107590389,LOC107688112 coding downstream 194301 3694729 ~ 3714082 (+)
slc16a6b LOC108259325 coding downstream 223335 3723763 ~ 3733885 (+)
G204679 NA non-coding upstream 82397 3399769 ~ 3403347 (+)
G204678 NA non-coding upstream 128838 3353298 ~ 3356906 (+)
G204633 cd2bp2,LOC107582988,LOC107729467 non-coding upstream 266860 3215787 ~ 3218884 (+)
G204417 NA non-coding upstream 413018 3064905 ~ 3072726 (+)
G204410 NA non-coding upstream 449581 3034271 ~ 3036163 (+)
G204771 NA non-coding downstream 87474 3587902 ~ 3590031 (+)
G204790 NA non-coding downstream 145335 3645763 ~ 3646675 (+)
G204774 NA non-coding downstream 147761 3648189 ~ 3649538 (+)
G204773 NA non-coding downstream 172556 3672984 ~ 3715580 (+)
G204815 NA non-coding downstream 276176 3776604 ~ 3786578 (+)
LOC113527909 NA other upstream 285611 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 472885 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 577701 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 1299580 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 1497829 1917205 ~ 1987915 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 33861 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 466305 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 470751 3971179 ~ 3971250 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 1119790 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 1192049 4692477 ~ 4711316 (+)

Expression


Co-expression Network