carm1 (carm1,LOC107689626)


Basic Information

Item Value
gene id carm1
gene name carm1,LOC107689626
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18802031 ~ 18818309 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917228.2
AGGCCCGTGTTCTCCGCGCGGTTGGATGTGGCGCGCGCTACTGCGAGCTGCTGTCTCTCTGCGCGAGCTCGAAGATGGCGGTGTCCGTGTTTCCCGGCGTGCGGCTCCTCTCTATCGGGGACGCCAACGGAGACATCCAGCGGCATTCCGAGCAGCAGCCCCTGCGGCTGGAGGTGAAGACCACGCCGGACGCGGCGCTTCTAAACCTCTCGAACAATGAGGAGGCGAGCGTGTTTAAGTGTTCAGTGTCACGGGAGACGGAGTGCAGTCGTGTGGGGAAGCAGTCCTTCATCATAACACTGGGCTGTAATAGTGTGCTTCTGCAGTTCGCCTCCCCCACAGATTTCTCCTCATTCTACAATCTGCTGAAGAACTGTCGTGGCCATGTGAATGAGCACTCAGTGTTCAGCGAGAGGACGGAAGAGTCATCGGCTGTACAGTACTTTCAGTTCTATGGCTATCTTTCTCAGCAGCAGAACATGATGCAGGACTATGTTAGAACTGGAACTTATCAACGGGCCATTCTCCAGAACCATACCGACTTCAAGGACAAGGTGGTGTTGGACGTGGGATGTGGCTCAGGGATCCTGTCGTTTTTTGCAGCTCAGGCTGGTGCGCGTAAAGTGTATGCTGTGGAGGCCAGCACCATGGCTCAGCACGCAGAGGTTTTGGTGAACAGTAACAGGTTGACGGAGCGTGTGGTAGTAATCCCAGGAAAGGTAGAGGAGGTCACCCTACCTGAGCAGGTGGACATCATCATCTCCGAACCCATGGGCTATATGCTGTTTAATGAGAGGATGCTGGAGAGCTACTTGCATGCCAAGAAATTCCTCAAACCAAATGgtaAAATGTTCCCCACCATTGGCGATGTCCACCTCGCTCCTTTCACAGACGAGCAGCTCTACATGGAGCAGTTCACCAAAGCCAACTTCTGgtACCAGCCATCTTTCCATGGGGTGGATCTGTCTGCACTGAGGGGAGCTGCTGTAGACGAGTACTTCAGACAGCCGATTGTGGACACGTTTGACATCCGAATCTTGATGGCCAAATCTGTGAAATACACAGTTAACTTTTTAGAAGCTAAAGAGGAGGACCTTTATAAGATAGAGATCCCCTTTAAGTTCCACATGATGCACTCAGGGTTGGTGCACGGCCTGGCTTTCTGGTTTGATGTTGCATTTATGGGATCTGTGATGACAGTGTGGCTCTCCACGGCACCCACTGAGCCCCTGACTCATTGGTATCAGGTGCGCTGTCTCCTGCAGTCGCCACTCTTCGCCAAAGCGGGAGACACCATGTCGGGCACGGCCCTGCTCATCGCCAACAAGAGGCAAAGCTATGACATCAGTATTGTTGCTCAAGTTGATCAGACTGGCTCCAAGTCCAGCAACCTCCTGGATCTGAAGAACCCCTTTTTCAGaTACACAGGCACCACCCCTAACCCTCCTCCCGGCTCACACTACACCTCCCCCTCTGAGAACATGTGGAACACTGGGGGGGCCTATAGCATGAGCCAAGGCATGGCTGTGtcaggAATGCCAGCAGCTTATGACCTCAGCACTGTCATCGGTGGCAGTGGCTCTACAGTTTCCCACAACAACCTCATCCCCCTTGGTACAGACACGCATGCACTGAACACGGGGATTGTGAACCACACTCACTCCAGAATGGGCTCGATCATGAGCACAGGAATTGTCCAGGgagCTACAACCCAGCAGGGTCCGACCAGCACCAGCACCCACTATCCCGTCACTAACCAGTTCACCATGGGCGGTCCTGCCATCTCAATGGCCTCACCTATGGCCATCCCCAGCAACACGATGCATTATGGGAGCTAAGGCTCCTGCCTGCTTCCCCTCCCCTTTGCATGTCCAGCCTCCCAAACTGACCACAGCCTAAACCAGATTACCAAATCCAGTGCTGCAGCATCTGACTGTCACCTTTTCCCTCCCTCTCGTCTTGATGTATATtcgtatataattatatataaaacctctttctctgtctctttccgtCCCACCCAcgcacccccacccccccatcGTACAATGCCAGCCTTCGCTCTGTCTTGGACAGTCGGGGGTGTGATGCCATCACTCTCCTCCTTCACACTAGTGCAGTTCCAGGATTAGCCACAAGGAGGCAGTGGACTGTCTTGAGCTTTGGGATTTGACGGAATGTTCTTTGCAGAAcagtttttagaaaaaaaaaaagtaaatacttATCAGATGTACATTCATACAAGAGACACTCAATGAAATGTCAGTGATGGACCGTTTGTAATGAACCTGAGATTTATGGCAGGGCTGTCTTGCTGTTCCTGGGTcgtctttttttctattttgttcgCTTTCTCTGTATCATGTCAAGCTGCCCAACAGTATCAACTATTGGCATAAATATAGTCTCACCTTGACCTTTCTAAACATTTGCAATGCAGCTGGATTTCCTCTCTGGCTTCCAGGAACATTCAGGAACTATTATTGCCTATAGATAGAGTAGTTAGATACATTCTTGTAGCTCTTTCCATTCTGGAgcaacattttttctttattttttttttttttttttttttttttttaaacatagtgCAACCCCAGATGTGCACAGCTAGCTGTTTCCCCTTGAGATCTGCACAGCAAGGTTAGCAGAAACTAACCATGTATTGAGCTAATGAGCGTTTGAGGACTCTTCTGTTCCAGAGGTCTGCATCCACACACTCTCCAGCCTTCCAGACACAATGCTGGAATTCTGGAACGGATTCCACAAGGCATTAGTTAAGGAAGGGGGACTGATGAACCGGACGTCAGGCTCTGCATACACCCATCGACCACTGCAGCAGGACAATTGTTTGGATCGGCAGGATCCTAGTTTACATCCCCCAAACCCTTCTGTTTGACCTGTGTGTGTcatgatattgtttttttttgtttgtttgttttttttttcttcgaaAATGTAAGCAAAGTTCACCTGTCAAACCTCTCTGACCCCTGACCCTTCCCCTTTTTCCTGTCCCCACATCTCCTACCTCCCCATGCTGGGCATTGCCTAGAGAAAGACTTTTGAGAAGGTATGCATTGCTTCCGGTCAcccatttatatatttttttcctttctgttcaGCCATTGATTTGATTTAGAAACTTTCATTGAAGAGAAGTCCTGTTAGTTTGTAGAATTAacccctttttgcttttttttttcatttcacaagaaaaagacacaaaaaaaacaaaaacaagaaaaaaaaacatgcaaattaaATGTTGGTGGAGACTTCCCTA
>XM_026917230.2
TCAGGCCCGTGTTCTCCGCGCGGTTGGATGTGGCGCGCGCTACTGCGAGCTGCTGTCTCTCTGCGCGAGCTCGAAGATGGCGGTGTCCGTGTTTCCCGGCGTGCGGCTCCTCTCTATCGGGGACGCCAACGGAGACATCCAGCGGCATTCCGAGCAGCAGCCCCTGCGGCTGGAGGTGAAGACCACGCCGGACGCGGCGCTTCTAAACCTCTCGAACAATGAGGAGGCGAGCGTGTTTAAGTGTTCAGTGTCACGGGAGACGGAGTGCAGTCGTGTGGGGAAGCAGTCCTTCATCATAACACTGGGCTGTAATAGTGTGCTTCTGCAGTTCGCCTCCCCCACAGATTTCTCCTCATTCTACAATCTGCTGAAGAACTGTCGTGGCCATGTGAATGAGCACTCAGTGTTCAGCGAGAGGACGGAAGAGTCATCGGCTGTACAGTACTTTCAGTTCTATGGCTATCTTTCTCAGCAGCAGAACATGATGCAGGACTATGTTAGAACTGGAACTTATCAACGGGCCATTCTCCAGAACCATACCGACTTCAAGGACAAGGTGGTGTTGGACGTGGGATGTGGCTCAGGGATCCTGTCGTTTTTTGCAGCTCAGGCTGGTGCGCGTAAAGTGTATGCTGTGGAGGCCAGCACCATGGCTCAGCACGCAGAGGTTTTGGTGAACAGTAACAGGTTGACGGAGCGTGTGGTAGTAATCCCAGGAAAGGTAGAGGAGGTCACCCTACCTGAGCAGGTGGACATCATCATCTCCGAACCCATGGGCTATATGCTGTTTAATGAGAGGATGCTGGAGAGCTACTTGCATGCCAAGAAATTCCTCAAACCAAATGgtaAAATGTTCCCCACCATTGGCGATGTCCACCTCGCTCCTTTCACAGACGAGCAGCTCTACATGGAGCAGTTCACCAAAGCCAACTTCTGgtACCAGCCATCTTTCCATGGGGTGGATCTGTCTGCACTGAGGGGAGCTGCTGTAGACGAGTACTTCAGACAGCCGATTGTGGACACGTTTGACATCCGAATCTTGATGGCCAAATCTGTGAAATACACAGTTAACTTTTTAGAAGCTAAAGAGGAGGACCTTTATAAGATAGAGATCCCCTTTAAGTTCCACATGATGCACTCAGGGTTGGTGCACGGCCTGGCTTTCTGGTTTGATGTTGCATTTATGGGATCTGTGATGACAGTGTGGCTCTCCACGGCACCCACTGAGCCCCTGACTCATTGGTATCAGGTGCGCTGTCTCCTGCAGTCGCCACTCTTCGCCAAAGCGGGAGACACCATGTCGGGCACGGCCCTGCTCATCGCCAACAAGAGGCAAAGCTATGACATCAGTATTGTTGCTCAAGTTGATCAGACTGGCTCCAAGTCCAGCAACCTCCTGGATCTGAAGAACCCCTTTTTCAGaTACACAGGCACCACCCCTAACCCTCCTCCCGGCTCACACTACACCTCCCCCTCTGAGAACATGTGGAACACTGGGGGGGCCTATAGCATGAGCCAAGGCATGGCTGTGtcaggAATGCCAGCAGCTTATGACCTCAGCACTGTCATCGGTGGCAGTGGCTCTACAGTTTCCCACAACAACCTCATCCCCCTTGTGAACACGGGGATTGTGAACCACACTCACTCCAGAATGGGCTCGATCATGAGCACAGGAATTGTCCAGGgagCTACAACCCAGCAGGGTCCGACCAGCACCAGCACCCACTATCCCGTCACTAACCAGTTCACCATGGGCGGTCCTGCCATCTCAATGGCCTCACCTATGGCCATCCCCAGCAACACGATGCATTATGGGAGCTAA

Function

symbol description
carm1 Predicted to enable several functions, including lysine-acetylated histone binding activity; nuclear receptor coactivator activity; and protein-arginine N-methyltransferase activity. Acts upstream of or within regulation of skeletal muscle fiber development. Predicted to be located in cytosol and nucleus. Is expressed in nervous system; segmental plate; shield; and somite. Orthologous to human CARM1 (coactivator associated arginine methyltransferase 1).

NR:

description
PREDICTED: histone-arginine methyltransferase CARM1 isoform X3

GO:

id name namespace
GO:0048742 regulation of skeletal muscle fiber development biological_process
GO:0034971 histone H3-R17 methylation biological_process
GO:0033146 regulation of intracellular estrogen receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045600 positive regulation of fat cell differentiation biological_process
GO:0006479 protein methylation biological_process
GO:0009405 pathogenesis biological_process
GO:0019919 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0030374 nuclear receptor coactivator activity molecular_function
GO:0035242 protein-arginine omega-N asymmetric methyltransferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0070577 lysine-acetylated histone binding molecular_function
GO:0035642 histone methyltransferase activity (H3-R17 specific) molecular_function

KEGG:

id description
K05931 CARM1, PRMT4; type I protein arginine methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917228.2 True 3286 mRNA 0.49 16 18802031 18818307
XM_026917230.2 False 1822 mRNA 0.54 16 18803479 18818309

Neighbor

gene id symbol gene type direction distance location
timm29 c2h19orf52 coding downstream 9072 18790181 ~ 18792959 (-)
slc25a23b slc25a23b,LOC108274688,LOC107601238,LOC107698653,LOC108444036,LOC107724434,LOC107689624 coding downstream 45355 18735653 ~ 18756676 (-)
znf207a znf207,LOC108278632,LOC108444040 coding downstream 81690 18711080 ~ 18720341 (-)
LOC117598995 LOC108191637 coding downstream 224654 18576604 ~ 18577377 (-)
LOC117598994 LOC101884462,LOC107081104,LOC101885893 coding downstream 407053 18389882 ~ 18394978 (-)
aldh3b1 aldh3b1,LOC108258475,LOC108444046,LOC107698763 coding upstream 17884 18836193 ~ 18843733 (-)
gna13b LOC108278714,LOC108438014,LOC107721501,LOC107719992,LOC107654495,LOC107590387,LOC107688114,LOC107601276 coding upstream 33147 18851456 ~ 18872146 (-)
cog1 cog1 coding upstream 84354 18902663 ~ 18915773 (-)
rogdi rogdi,LOC107719995,LOC105899978,LOC107688116 coding upstream 103827 18922136 ~ 18936509 (-)
scpep1 scpep1,LOC107654482,LOC107601266,LOC107720074 coding upstream 138740 18957049 ~ 18968781 (-)
LOC117599003 NA non-coding downstream 725644 18070785 ~ 18076387 (-)
G213028 NA non-coding downstream 758752 18041404 ~ 18043279 (-)
G212891 NA non-coding downstream 901761 17900070 ~ 17900270 (-)
G212871 NA non-coding downstream 915789 17886012 ~ 17886242 (-)
G212856 NA non-coding downstream 922185 17879629 ~ 17879846 (-)
G213549 NA non-coding upstream 205449 19023758 ~ 19072985 (-)
G213716 tnrc6a non-coding upstream 598875 19417184 ~ 19422415 (-)
G213879 NA non-coding upstream 845028 19663337 ~ 19663762 (-)
G214159 NA non-coding upstream 1202243 20020552 ~ 20056144 (-)
G214325 NA non-coding upstream 1617743 20436052 ~ 20438834 (-)
LOC117598999 NA other downstream 424668 18375684 ~ 18377363 (-)
mettl23 mettl23 other downstream 747815 18050735 ~ 18054216 (-)
tsen54 tsen54 other downstream 929450 17811613 ~ 17872581 (-)
G212750 LOC100136012,LOC107575789 other downstream 1126747 17674827 ~ 17675284 (-)
LOC113528038 caskin2 other downstream 1283504 17390186 ~ 17518527 (-)
si:dkey-204f11.64 LOC108274053 other upstream 5162 18823471 ~ 18827734 (-)
rbbp6 rbbp6 other upstream 610908 19429217 ~ 19448559 (-)
lyar lyar other upstream 1122045 19940354 ~ 19984149 (-)
slc2a9l2 slc2a9 other upstream 1221478 20039787 ~ 20138213 (-)
hs3st1 hs3st1 other upstream 1387030 20205339 ~ 20213629 (-)

Expression


Co-expression Network