ankrd40 (ankrd40)


Basic Information

Item Value
gene id ankrd40
gene name ankrd40
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12537412 ~ 12543062 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917235.2
CCCATAATGAAACGAGTGCTTACTGCAGGTAGAGGACTTCTTTAGTCGGCGAAGCAGTACTTTTTAATCTTTAGCTGTCGCAAGTAGatttatatagttattattGTACTGAGATCTAGAGATTAGCCTGTCTGAAGCATTCCATAGAATacatttaggattttttttagcattattgCTATCCGCTAgctataaacaacaacaacaacatcgcGCTGTAATCGGATGACGGCAAGCATCGTGTTTCGCTGCTATTTGGGAATAAAACCTTCTGCACAAGGGGACTTTAACTGAGCTGTTCGTATGAAAGTCAAGTGCTGACTGCCAGGTGAATTATGTCCACGCTGTCTTTGGATAAAGAACTGCAAGAGCGCTTAAGAGAGGCGAGTGCTATTGGAGACCTTGACGAAGTGCGGACTTTAGTCGAGAGCGGAGTAAACATCAACTCCCAAAATGAAATCAATGGATGGACATGTTTACACTGGGCATGCAagagaaaccacaaacacaTAGTGGCGTATCTTCTGAATTCTGGGGCCGACAAAGAAATTCTCACTGCAAAAGATGAGTTAGCCGTACAGTTGACCTCCAAACCCGAGATCAGAAGACTGCTTGGAGtggaggaagaggagcatGAAGTAAAGGATGCAGAGCTGCCGATTATTCCAAACTATCTGTCTAACCCACCCTTCCTGTATTGCAAGATGGATAAAAGCGACCTGAGTGTAGCACGACACGTTTCCCAGAATGGCACCAGTGACCATTTGGAGGCTGTAGTCTCAGAGCCGGCCACTTTATCCCCCAtacaggagcagcagcagcagcagcagcagcagcagagcctgtACTCGGATGGCCAAAGCCAACCTGCATTGTCGTACGTCTCCATGGTAGAGCCGAGCAGCATTGTGCCAAACCAGGTGACTAATGGGACCCTGTCCATGGAGGTCTCCCCGGAGGTGCATCACAGCAACCATAATGAGTACACTCACAATCACAGCATTGCCCAGAACAGCCCTGTTTGTCCCCCACTCCCTTCAGCAAGCGCAGGCTCGAACCCCACCATTACCCGGCAACAGTCTGTCCCCCATCAGCTGAACGGCTCTCAGCCCGGGGGCTCTATGCCTGCCTTCCAGCCCTTCTTCTTCACCAGCACCTTCCCTGTAAACGTGCGAGAACTCGTTCTGAAGGTGCGAATCCAGAACCCACATGCCAGAGAAAATGATTTCATCGAGGTGGAGCTGGACAGACAGGAGCTGACGTACCGGGCGTTGCTGCGGGTCTGCTGCCGTGAGCTGGACATTAGTGCTGAGCATGTGGAGAAAATACGCAAGCTCCCCAACACTATGCTCAGAAAGGACAAAGATGTGGCTCGGCTTCAGGACTTCCAGGAACTGGAGGTGGTGTTGGAGAAGGCGGAGAGTTTGTCTTTGTTCTCTGGTCCAGGAGGGCTGAACGACAGGCCCTGCTACAACATGAAGGCCTCGAGGCTCACCTACTAGCTCCTGCCTCCAGACCAGCACGAGGTGGACTGACTCACTGCCCCATCTGGGACTGTAGTTCAAAATGCCTAATTCATACCTAGGTTCTGTTTTTGCCATTCTACAGATTAGATGCCATTCTTCCATTTTCCTCCTCAGTCTATATACAATGTTAGCCATATGCCTTTTCTCCCAAGCCTATATGTTGCCCGTGCATGGTCCCCACAGCCATCCGAAGAACGATGTGACgccctcctcctccactgtaaTCCTTGTTAGTTTTCTCACAAGTCTTTGGTTTTAAACGTCTTTCACAGTCATGACATCATCTTTTAGGAGCCACTATTTTTGAATATTCAAAATGTTCTTGCTCGGCTTTGGGCCGTATATCCAAATCTGTCACCTCCCATGTTGCTGGCCTACGTGAAGTTTTCAGATCTGTCTCACTGCTGTGTTTGCTTATGAGGCCACTGTGTGGTTTTGAGCACAGCTCACAGAGACAGTTGTGACCTGTACCAGCACTTCTTATTGTCAGTTATGGTCATTAACATATATGCACTCCTTTCCCAATACAAGCTATTTTAATTTGCACTGGCAAAGCACACAGCAAATTCGCTTGATTGCTAACATCCTCTTTAAAGCGTGTTAGCTTTTTTTAGTTCCACTTGGGAAAGCAGTTGTAGTTTGATGTACTAAAATACAGGAGCTTCATAAACTAAAAAGGAGGGGTGTTTTTcatgttctgtgtatgtgtgtttgccaCTTAATCCCCtgtgcactttaaaaaaaatgataacaaATGGGAGGTacttaaaaaaatgcatggggcttttctaattttattgatttttgaatACATAAGTGGTGTGTTTTGGTGCCATTGCTGCTCCTTCAGACACTGCAAACCAAAAACTATCCATATTATCTTGTATCAAGGCCtaataatcatttttcattCTGCACTGAATAATGTAGCAAAGATTGctgttgttttatgtaaatCTTAATTTTTAAAGGAATGAAAGATTCAAGAACAGGGTTTAATGAATGGGAGCTTCCACAAACACTTTCTTCTTATGAGTTTAATAGTTATAATAAGAGGGATAAAGTTACTATAATGGATATTGTTCTCTGGATCTAATTGCAGCACAGGTTTTATATTTAGGAAGCAGGATTCATACTTGATGACTGACTGGTCCATTTAGCAGCAGTGCCGTTCGACATAAGTAATTCTCTACAGGTCTGTTGCGGTCCCAGTTCCTAAGATAAAACTTGCAATActtctttgtcatttttatctaaataaaatttgtatacAGGCTAAAAGACACCTTGCACATGTAGACCAGGGGCTGTGCTTCATTTCTGTGAGTGGTTTTCACAACATTTTTAGTTCTGTAGATAGAAGGAAGTATAAAAGTAGGAAATTGAAAAATAGGCATAACTGTATTAATGGAGAAGGCATggctactgatttttttttttttttttttttttttaaacatactaaTTGGAAACTTGTTTATCTTGTTTTGGAAGAGTGTCTAACATAAACATAAGGGTGTCCTAATACAAAAGCTCGCTTAAAATGCAGAAACTGTTCACCTTTAACTTTAGTCCCTCTAAATATTGTATTGTTCTGTActatggatttattttatttattattttataaatttgacTGTAGAAAGGAGGATCCAGAGCACACTACAGCTGAAATGGAGCCAagcatttgtctgtctgtctgcctgtctgtctgtctatgtatcCATTGTGTTCTGTATGCTCATGAAAATGCTGACTATTCACCAGGTTGAGAAAGCTGCAAGGTTTCTGACTGATGTAAGGCATCAAAATTCTCTGTGGAAAACTCAGTGTACTAACTGGTCATGTTTGGGATGATGAATACAGTTAACCTATGCATCCACA

Function

symbol description
ankrd40 Orthologous to human ANKRD40 (ankyrin repeat domain 40).

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 40

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917235.2 True 3410 mRNA 0.43 6 12537412 12543062

Neighbor

gene id symbol gene type direction distance location
wfikkn2a wfikkn2,LOC103032076,LOC107690026,LOC107758109,LOC107555656,LOC107670669,LOC107583670 coding downstream 7111 12526340 ~ 12530301 (-)
LOC113528448 tmem159 coding downstream 142834 12389706 ~ 12394578 (-)
si:ch211-139g16.8 NA coding downstream 156378 12375893 ~ 12381034 (-)
rps2 rps2,LOC107690003,LOC107758112 coding downstream 163147 12371533 ~ 12374265 (-)
LOC113528330 rpl3l coding downstream 173646 12356624 ~ 12363766 (-)
zgc:171844 LOC108260146,LOC108432048,LOC100703987,LOC106607059 coding upstream 19888 12562950 ~ 12583366 (-)
mfsd6l mfsd6l coding upstream 44613 12587675 ~ 12591505 (-)
pik3r6b LOC108260485 coding upstream 50515 12593577 ~ 12612926 (-)
trnas-aga_12 NA coding upstream 283396 12826458 ~ 12826539 (-)
ilf3b ilf3,LOC106601349 coding upstream 504257 13047319 ~ 13063983 (-)
LOC117598772 NA non-coding downstream 73534 12446461 ~ 12463878 (-)
G209984 NA non-coding downstream 203750 12333454 ~ 12333662 (-)
G209961 NA non-coding downstream 300220 12236974 ~ 12237192 (-)
G209951 NA non-coding downstream 363005 12173454 ~ 12174407 (-)
G209946 NA non-coding downstream 378300 12158070 ~ 12159112 (-)
G210123 NA non-coding upstream 43369 12586431 ~ 12587089 (-)
G210351 kpna2,LOC108261381,LOC100304957,LOC108432045 non-coding upstream 324528 12867590 ~ 12868480 (-)
G210349 kpna2,LOC108261381,LOC108432045,LOC106607066 non-coding upstream 326190 12869252 ~ 12870186 (-)
G210350 NA non-coding upstream 378875 12921937 ~ 12923464 (-)
G210348 LOC108257112 non-coding upstream 383583 12926645 ~ 12928808 (-)
msrb1a msrb1 other downstream 198143 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 221914 12297776 ~ 12315498 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 836240 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 889415 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 2066894 10450724 ~ 10470518 (-)
tom1 LOC108260160 other upstream 3271 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 847554 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 852404 13395466 ~ 13399225 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 1298104 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 1450814 13993876 ~ 14001037 (-)

Expression


Co-expression Network