LOC113528592 (LOC108256535,LOC108435873)


Basic Information

Item Value
gene id LOC113528592
gene name LOC108256535,LOC108435873
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14183537 ~ 14202558 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917236.2
GCTGAGAGGACTGTATTCCTGACTGTAATCACCCTGTTAGTGCCTCAGTAAAGTTCACCGGTGGAGAAGCTGCAGCTATGGTGCAGAAGTATCAGTCACCAGTGCGGGTCTACAAGCACCCCTTTGAACTTATAATGGCGGCCTACGAGAGAAGATTCCCATCCTGCCCCCTAATCCCCATTTTTGTGCACAGCGACATCATCAGTGAGAGCCAGAGCGAGGATGGAGCGACTCATGTAATCGAGCGCAGGTGTACTCTTGATGTGGAGGCCCCTCGATTGTTGAAAAGGATAGCAGGGGTGGACTATCTGTACTTTGTGCAGAAAAACACACTGGATTGGCGACAGAGGAGTCTGCATATCGAGACCTACAATGAGTCCTTTTCCAGCAGGGTGATCGTCAAAGAGCACTGTAGCTACACGGTGCACCCAGAAAATGAAGACTGGACATGTTTTGAGCAGTCAGCCAGTATGGACATGAAGTCTTTTTTTGGATTTGAGAGTACAGCAGAGAAGATTGCTATGAGGCAGTATGCTTCCAGTATtagtaagGGCAAGGAGATTATTGAATATTACCTCAGAGAGCTAGAGACAGAGGGTATAACTCATATACCTCGCTGGACTCCTCCTTCCACCACCATAGCATCACCCCAGCTAACAGTCAACGCAGCCGTCATTCCCACACCCAACAGCAGCAAGGAAGACCAGGAAAGAGTGCATAGTAACCTTACAGAGAGCTTGCCTGCTTCTGTAGAAGATAAGTTAGATGCAGATTACATCAGACATTATCTAGGAGAGCTGAGTCCTCTGAATGAGAGTTGCTTCATCCGTCTACGGCAGTGGCTGCAGGAAACACACAAGGGAAAGCTCCCTAAAGACCAGCATGTGCTGCGGTTTCTACGCTCGCGGGACTTTAACGTAGAGAAAGCTCGAGAGGCACTGTGCCATACACTCACCTGGAGGAAGCAGCACCAGGTGGACTTCCTGTTGGACTCATGGAAGTGCCCACAGCTGTTGCGTGACTACTACACAGGGGGATGGCACTATCATGACAAAGATGGCCTACCTCTCTACATCTTACGGCTAGGACAAATGGACACCAAAGGACTTGTGCGGGCTTTAGGTGAAGAATCTCTTCTTCGACATGTGCTATCCATCAATGAGGAAGGTCTGAAGCGCTGCGAGGAGAACACAATCATCTTTGGTAGACCCATTAGTTGCTGGACCTGTCTGGTGGATCTGGAGGGGTTGAATATGAGGCATCTGTGGAGGCCAGGAATTAAAGCTTTACTGAGGATTATAGAGGTGGTGGAGGCCAACTACCCCGAGACACTAGGACGGTTGCTTATACTGAGAGCTCCTCGAGTCTTTCCTGTTCTCTGGACACTGATCAGCCCATTCATTGACGAGAACACTCGCAAGAAATTCCTCATCTACGCTGGGAATGACTATCAAGATTCAGGAGGCTTGGTGGATTACATAGACAGAGAGTTCATCCCTGATTTTCTCGGAGGAGATTGTCCATGTGATGTCCCGGACGGTGGCCTGGTTCCCAAATCTCTGTACCACACAGCAGAGGAGCTGGAAAATGAGGAGATCAAACTCTGGACTGAAACAATCTACAAAACTGCTAGTGTGTTCAAAGGAGCTCCACATGAGGTGTTGATTGCAATCACAGAGGCATCCTCAGTTATCACGTGGGACTTTGACGTGTGTAAAGGTGATGCTGTTTTCAACATCTATCACTCTAAAAAAGCCCCACAGACTCAGAAGAGGGATACTCTGGGTAATCTGACTGGTCCTGGAGGCAACAATGTGCAAATGATTGATAAGGCATGGATTCTGGGGAAGGACTACAGCTTGGTGGAAACAGCTCTAACTTGTAGAGAGGGCGAGAGCATCCAGGGTTCTCATGTAACACGTTGGCCTGGCTTCTACATACTGCAGTGGCGCTTCCACAGCTCAGCATCTAGCTTATCCTCACTTCAAGTCTCCACACAGAAGTGTAGGGTGATGTACTACACTGAAGTGCTGCGCTCTGACGACTTCAGGGGTTCTATGACAAGTCTGGAGTCCAGTCACAGTGGTTTCTCTCAGCTGAGCACCACTACCACCTCTTCTGGCCAGTCACATTCCAGCTCAGTCGCTTCATGGTAGAACATAAGCCGTATAAGAACTGCGATTGTTTAATACAAATTCTGTATAAAATGTTGCACAgaattttgtgttgttgttaCTTAAGTTGTTTGAATAATTTCTCATGTcataacatataataaaaataatc

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917236.2 True 2286 mRNA 0.48 15 14183537 14202558

Neighbor

gene id symbol gene type direction distance location
alyref alyref coding downstream 193645 13986722 ~ 13989892 (-)
arhgdia arhgdia,LOC107654583,LOC107665665 coding downstream 198514 13960501 ~ 13985023 (-)
recql5 recql5 coding downstream 245098 13904158 ~ 13938439 (-)
zgc:112183 rab37,zgc:112183,LOC108278300,LOC107665712,LOC107654586,LOC106606976,LOC105012908 coding downstream 349652 13815726 ~ 13833885 (-)
LOC113527894 LOC108278278,LOC108412261 coding downstream 374094 13763895 ~ 13809443 (-)
prpsap1 LOC105013149,LOC108255900,LOC106606986,LOC103375364,LOC101163819,LOC100700674,LOC108435871,LOC107731682 coding upstream 176477 14379035 ~ 14391094 (-)
LOC113527937 LOC108255917 coding upstream 191671 14394229 ~ 14410677 (-)
LOC113528545 LOC108255936,LOC103153053 coding upstream 212355 14414913 ~ 14432720 (-)
si:dkey-282h22.5 LOC108261121 coding upstream 244682 14447240 ~ 14451595 (-)
LOC113528481 zgc:112320,LOC108275843,LOC101168622 coding upstream 260847 14463405 ~ 14465291 (-)
G210952 NA non-coding downstream 48233 14135094 ~ 14135304 (-)
G210915 NA non-coding downstream 313964 13869199 ~ 13869573 (-)
G210877 NA non-coding downstream 359244 13758526 ~ 13824293 (-)
G210888 NA non-coding downstream 397026 13732419 ~ 13786511 (-)
LOC113527951 NA non-coding downstream 435538 13740069 ~ 13747999 (-)
G210973 NA non-coding upstream 14115 14216673 ~ 14216872 (-)
G210997 mgat5b,LOC108274344,LOC108435872 non-coding upstream 91749 14294307 ~ 14298198 (-)
G211003 NA non-coding upstream 127028 14329586 ~ 14329920 (-)
G211054 LOC108275544 non-coding upstream 259234 14461792 ~ 14462409 (-)
G211187 NA non-coding upstream 386262 14588820 ~ 14594664 (-)
pecam1 LOC108279165 other downstream 153896 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 177025 14004169 ~ 14006512 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other downstream 182500 13993876 ~ 14001037 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other downstream 312406 13841166 ~ 13871131 (-)
LOC117598755 NA other downstream 784312 13395466 ~ 13399225 (-)
G211151 usp36 other upstream 317719 14520277 ~ 14520975 (-)
LOC113528445 LOC108274755 other upstream 476192 14678750 ~ 14690132 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other upstream 776061 14978619 ~ 14986112 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 1948517 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 2369987 16572545 ~ 16598688 (-)

Expression


Co-expression Network