hoxb2a (hoxb2,LOC107687781)


Basic Information

Item Value
gene id hoxb2a
gene name hoxb2,LOC107687781
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9669609 ~ 9673077 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917239.2
tcacgcGAAATTGTTCGacaaaaaattcacatttcatAAGCGACCTCTCAGTGAACCTATGGTAGCCTATGTCGTAATTTGCCCTATTTAGATATTAGATATgcataaaaagttttttttttttttacagaaagacTGTAATCttatcacaaaataaaatcagtgcaaTCTTGCAATACCAtcaaaataaatgcatgcatttaaaaaaaaaatttgagccGAAATTTAGCTGCAAACTTACATGCACAAAGGTCCCCAGTTTTAGAAGTCTCATAGTAGATGGAATGCTGTAAATTATTGAACCTCATACGCTACACCAGTCTCATTCGCGACGTTCTGTGTAATGATGTCCAAGCCCTAAAATCTCTCCGATATATCCCTGTTTGTTTAGGCTACACACGAGaaatagtatatatacacacacacatatatattgaCAACATGTAGTTACATTTCTTGTCTGTTACTCTTGTCAAAACTTTTAAGATTAATGACTCTTGCTAAAATACGCAGTTAGCCATATTGTTGATGTGCTTTTAACAGACATTTAAGGCCTCAGGCTTACATCACCCAAAGCCCTTTATTCATATGGCCATTGTCTAAATGAAGACGTTCCTTAACCACCCACACCTCAAAGCAATCAAGCACATGGCAAACGTACGCATTTTTGATTATATACACTGCTAACGCGGGAATTCTGTGATCTTGAATATTTGATCAATATAGAAAATAATGCTTTCTTTTGCCACCAGGCCCCGTATTTCCATTGGTTGAGACTAGTCATGTGACCAGGAATTGGCTGCAAATTCGCCCATAGTCCTCAGTTTAGTAGACCCTGGTCCCCATACGCTAGTAATATCACCAATTATTAAAGCCCGCAAAAACAGTCGTGGTGGGAGCGCAAAATAAAACCGCGCCTTTTGGATGTTATTTTTGCGCATTTTTTATGTCGCTGGCCGCCCATTTTGCTTAGGCAAAGCGATGAATTTTGAATTTGAGAGGGAGATTGGGTTCATCAACAGCCAGCCTTCCCTTGCTGAGTGCCTGACGTCTTTCCCCGCTGTCCTGGAGTCATTTCAAACTTCATCAATCAAGGACTCGACAGTAATTCCACCTCCTTTCGAGCACACTATCCCCAGCCTGAGCCCTTGCACAGGCAACCAGGCGCGACCGAGGAGCCATAAGCGAACCGCCTCTAATGGCCTCCAGCTCCGGACGCAAACCACGCCACCAACGCAGCAGAAGCAGGGCCCGGCTTCAGTCACGGCCGGCGGCCCCCTTGCCCACGAGTTCCCATGGATGAAGGAAAAGAAGTCGTCGAAGAAATGCCCCAAGCCTGGAGCAGCACCTACTGCAGCCACTGCAGCTGCCTCTCCCTCTCCAGCATCCTCTGGTTTCACCACCGCAGGACTCGAGTCTCCCACAGAAGTACAAGTCGGGTTGGACAATGGCAGCGGTTCTCGGCGTCTGAGGACAgcctacaccaacacacagctACTCGAGCTGGAGAAGGAGTTCCATTTCAACAAATATCTTTGTCGGCCCAGAAGGGTCGAAATTGCAGCCCTTTTGGATCTAACCGAGCGCCAGGTCAAAGTGTGGTTCCAAAATCGGCGCATGAAGCACAAGCGACAAACCACGCACCACCGAGACGGACAAGAAGGCGAGTCGAGCGGTTTCGAGCCACTCGAAGGCTCAGATGCAGCCTCACCGTTCCCGAACCCGCCGCCGGAGCCGTCCGGTCCGACAGCATCCAACTCCAGTTCGGCTAGTGCATCCGAGAGTGAGCCGTGTCTTCCGGCTCCCTGCTACAGCAATAGTGCTGACAATACCCAGCCCACGCCTGAGGAGAGCCAGCCAATACAGACCGAGTCGGCAGATGGTCCTGACACAGCGGTTCACTCACCCCCGTACCCGACACCCACTGCCGATAACCCCGGTACAATGGCCGAGTCGCGCGAGGAATTGCCAGAGAACGCCTTCACGCAGCCGCAGGACGCCAACTCACTAGCGGATCTGAATTTCTTTTCCGCAGACTCCTGCCTACAGATTTCGGACGCTTTATCGCCCAGTCTGCAGAGTTCCCTGGATAGCCCCGTAGACTTCTCCGAAGAGGATTTTGACTTGTTTACAAGTACTCTTTGTACGATAGATTTacaacatttacagttttgACGGACTTAAAAACAATCGAAATGTATCCCATCCCACTAGCCTATTATGAATGCTTTTAACCAGAACATTCtcgaaagagaagagaaaactaTTTTTAGGTTATATTCACAAACACCTAGCTGCGAGACGGAGCTGTATAGCGGAGactaataaatcattacagtattacCATATTGTTTAAGCGAATCCACACCGGGATTGCTAATGTCCAGTTTCAggtattttctcttttgttcaTCTGGATTTTACTTCATCCTGAATTATGGATAATTATGCGGGGACTTTTTTCAGTGAAACTCAATCGTTGAATTCTCAGGAAAGTCAGACATAATGTTAGCTGAACTgcttttagagttttttttccgGAGACGGGCGTTGTGCCTGCTGATGAATTTTAGAACTAGTTTATTTATTGAGATTCTTTAATAgtaaattacaaattatttattgtacattattttcatagttgaaaataaaacatttataagtGTCA

Function

symbol description
hoxb2 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleoplasm.

NR:

description
PREDICTED: homeobox protein Hox-B2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09302 HOX_2; homeobox protein HoxA/B2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917239.2 True 2668 mRNA 0.45 2 9669609 9673077

Neighbor

gene id symbol gene type direction distance location
hoxb1a hoxb1,LOC108274656 coding downstream 11203 9654443 ~ 9658406 (-)
cbx1a LOC108279860,LOC108413138,LOC103037352 coding downstream 168029 9490348 ~ 9501580 (-)
LOC113528600 LOC108258913 coding downstream 256999 9401685 ~ 9412610 (-)
adsl adsl coding downstream 278249 9380674 ~ 9391360 (-)
tmem150b tmem150b coding downstream 290013 9373152 ~ 9379596 (-)
hoxb3a hoxb3,hoxb3a,LOC108278472,LOC107687775,LOC107740615,LOC107582888 coding upstream 2685 9675762 ~ 9722637 (-)
hoxb4a hoxb4,hoxb4a,LOC107740620,LOC107585041 coding upstream 24954 9698031 ~ 9702424 (-)
hoxb5a hoxb5a,LOC108278507,LOC108413114,LOC107717200,LOC107687777,LOC107662384 coding upstream 38062 9711139 ~ 9713742 (-)
hoxb6a hoxb6a,LOC108278545,LOC108413127,LOC107585042,LOC107582892,LOC107662387 coding upstream 41933 9715010 ~ 9717469 (-)
hoxb7a hoxb7 coding upstream 51284 9724361 ~ 9728854 (-)
G208391 NA non-coding downstream 163859 9494623 ~ 9505750 (-)
LOC117598997 NA non-coding downstream 223505 9441986 ~ 9446104 (-)
G208189 NA non-coding downstream 566483 9102911 ~ 9103126 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding downstream 606102 9061580 ~ 9063507 (-)
G208153 NA non-coding downstream 638631 9030525 ~ 9030978 (-)
G208473 NA non-coding upstream 73419 9746496 ~ 9748039 (-)
LOC117599011 NA non-coding upstream 156550 9829627 ~ 9927942 (-)
LOC113528446 NA non-coding upstream 164173 9837250 ~ 9838412 (-)
G208613 msl1 non-coding upstream 241830 9914907 ~ 9917529 (-)
G208649 NA non-coding upstream 390900 10063977 ~ 10066356 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 195131 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 250025 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 465969 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 526738 9112966 ~ 9142871 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 956291 8707954 ~ 8713318 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 56774 9729851 ~ 9732566 (-)
tecpr1b LOC108276900 other upstream 777647 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1969080 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 2026772 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 2624699 12297776 ~ 12315498 (-)

Expression


Co-expression Network