LOC113528600 (LOC108258913)


Basic Information

Item Value
gene id LOC113528600
gene name LOC108258913
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9401685 ~ 9412610 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917248.2
CTCTTCTGTGTGCTGCTGGGAGGAATGGCCGTGTGAATGTTTTGAGCTTTAGCTAAAACAGCAAACTCGACCCGAGGATAACAGCAGTTAAGACTAGCGCCCTATATATACACAGCAAGATGGTGCTGGAACGCCAAAACCCTGCCTCGGGCAAACTTAAACCTCGAATGTCAAATAAGGAGCGTTTTCACTGCGTCAGTCCAGAGATTAACCTCTCATTGTATGCGGCATTAAAAGACTGGCTTCCATGTAATCATGAATATCACATCTGTGACTACAAGACCATAAGGCAGACTCAGGACCATATAGATTTTTCTGCCACTCTAAGAATGACTATCTCTACCGTTGAAGAAGTACAACAGTGGGTGAAAGACTCGACCATCACCTGGAGGATTGATCGAACCAGACCACCTAAGGGACAAAGAGTTATTTTTAAGGTGGACTATAGATGCCACCACAACACAAAACCAAGGAACACCATGGAACCATCTGGGAGAAGGACCAAAAACACAAACTGCCCTGCAAAGATGAGCATAACTCTCCATCGCCCACAGGGCAGCAATGGAAGGCAGTGTCGGAGCACAGATCCTCACATGCCAGCTTTCCCGACACTCGTACACATCACCAATGAGCACAATCATAACTTGCACGTACCGGATGCATTGAGGTACAAAGACGTTGGACCAGAAGCCATACAAAAGTTAAAGAAGCTGTTTGAAGCAGGTCATTCGCCATCCACAGCTCTGGACGTTTTAAAATACGACCTCCAGCTCGAGCTTGGAGAGGATTATGCGTATGCATCAGCAGACCGATCCATCTGCCCTGACATTCAGTTTTGCTACAGGCTGTACCACCAAGTTTCTAAGTCTCTCAGAGAAGCCAGTCCATCCTCTTCCATTCTCCCCACCCAAGATACAACCACAACCTGGGTAGCAGCTGATCCGACTGGACAGACATGCATCATGGAGCATGAGATTGTCACCACAGAAGtttcagaggAGGACAATCCCACAGACAAGCTGAAGTCGTGCTTATCTGATCTGTGTGACATTATTGAGAAACAGCCGAGTGTGTGGTCTGCAACACAGGACTTTATCAAGGGAATTGAACGGGTCCAGCACAACCCTGTCAAGCTAGCGTCAGCCATGCACGCCTTTGGTCGCTACAGCTGTCTCCTAATGAAGAAAAGGGCTAAAACTATGCGAAGGGGTTCTCAGTGTGCTGGACTTGCCATTACTGCCCAGCCAACAGCAGTGACCAGGAGGAAGCCCAAGCTTGGTGGAAGGCGACGGCTGACGGTGGGCAGACAGAGCAAGACTACTTCAGGGCCGGACCATGAGTACAGTCAGccagaaaaaagacagagatgCTCAGGGCCTCATGGTTTTTCACACGGCATGGCAAAAACCAAATAACAAAATAGCTTTAATAAATTAGTTTTAGTATAGCAGTTGTGGCCCATCACCCCTTTGCCTGAGAGGAGATAGACATGAGCTTGAGTGCTATTTCATATGGGTGTATTTTGTtcaatgtatataattttttacagACATATAAAATGGGCTTGCTGTCTGATTCATTTTACAAACCTCACCTATCACCACACCTCCAGTTATGCCCACAATTCCTAAATCTGCacttatatttttgtatatcaTGATTCTTTGAGATGTAACAGAATGGCACAACTCTCACTGTCTACTCTAACAGCTAACTTCACATTTATGTTACACTATAGATTGCTTGATAACTCCTGCATATATAAAGATAGAAATTTGACTTTGCTCTGTAAAAGAAATTTTCATTCCAACGTACAGGCTACTGCTGTTTCAATGAAATTAGCTTCAGTACAAGCTTTCTTCTTGCATTCTACAACAAGATTCCACAAGCTTCACCTTTTCTCAGAGTGTGACAGAGTGACACTTGCACTGAAGTTGACTTTGTagagaaatgaattaaatgtggCCCGAATTGATGCTAACAGCTTTGGATAATGATGCAAGCGTGTGCACATTCGGTGAATGTAATGTATGCTGTAAATGAATTCTATAAGATGATAAAGTTTAAGAGGAATGAATCTTTGTTAAATACATCAGTGCTCTTCAAACTGAGTTAGTATCTCTGTTTGGAAGTGTGTATCCTTCAGTGCCCTTAAATAAGTGCATTATGAAAATGCTGTTGTGAAAAAGAGCCAACAGGTTTTGTTAAATGAGGAGTTAAAAAagtctcttttttgtttgtggctcatttttttaaaacaattaattattgtactttttgaAAAAGCTTGAATTGAATTCTCCATTTCTAGGCTGATGCGTAGTGATGTTCTGTTGCTGCAAAACATGTTTGATATCTTCAAAAGTTTACTCTTGCTTGGACCCATGGTTATCTATGCTAAATTATACAAGCTTGTGTATAatgaattttgtttgtttacatgagTGGATAATAGTGAGTtatcaaaattttaatttgtgtaaacACGTTAATATATGATTGCCCGCTCATGATAGATATCAAGTTTAACTAAGCATGATCTGTTTGGTAGATTCAGATTCTGTAACAAGTGCCTAAAGACATTGTGCTTACATTGTGGTTTACTTGGTAACCCCAGTAAACACTAGAATATAAGCTTCCAATATAGTGGAAACTTTTTGCTTGcagagtttaaacacacacattcccacccACCACATATCCTACTGGCTAGCTGCAATTACAGCTCATTTTGAATTCTTGACCTGCTTTTAAATGAGTCACATTACAGTGCAGGATTAACTGAAAGGTTACTGTAGAAGTCATATTCAGTCATTCATAAAATAACGGAAATTTTGTTCCCACATTAGTTTCCTCTGACAAAGTTTTCATACCCACCCCAAATTTTCAACTCCAACACCTGTGTCTGTTTAGGAGGTGTTGTACAGTATAACACAAACTGTGCACAACTCTACAGTCACTCCCCATACCCAAACTGTATTCAAAATAATCACAATTCAGAATAAATACTGATTGGtgggtaaggaataaaacacaactgggcatgctattatagaaaaatacacAACGACGAGGTAGTGTGATTTTTCAAGAAAAATTCTGAAGTGTCTAATTCCTGTATAGTAGCCACTGCAATGGCCCAAACATTAAAActgcttgctttttttcccata
>XM_034310057.1
CCATGCATCTCTGCGCATGCGCGTGGACTTTTCACAGAGTCAGCGATTTTCGTTACACCGGTAACTCTTCTGTGTGCTGCTGGGAGGAATGGCCGTGTGAATGTTTTGAGCTTTAGCTAAAAACAGCAAACTCGACCCGAGGATAACAGCAGTTAAGACTAGCGCCCTATATATACACAGCAAGATGGTGCTGGAACGCCAAAACCCTGCCTCGGGCAAACTTAAACCTCGAATGTCAAATAAGGAGCGTTTTCACTGCGTCAGTCCAGAGATTAACCTCTCATTGTATGCGGCATTAAAAGACTGGCTTCCATGTAATCATGAATATCACATCTGTGACTACAAGACCATAAGGCAGACTCAGGACCATATAGATTTTTCTGCCACTCTAAGAATGACTATCTCTACCGTTGAAGAAGTACAACAGTGGGTGAAAGACTCGACCATCACCTGGAGGATTGATCGAACCAGACCACCTAAGGGACAAAGAGTTATTTTTAAGGTGGACTATAGATGCCACCACAACACAAAACCAAGGAACACCATGGAACCATCTGGGAGAAGGACCAAAAACACAAACTGCCCTGCAAAGATGAGCATAACTCTCCATCGCCCACAGGGCAGCAATGGAAGGCAGTGTCGGAGCACAGATCCTCACATGCCAGCTTTCCCGACACTCGTACACATCACCAATGAGCACAATCATAACTTGCACGTACCGGATGCATTGAGGTACAAAGACGTTGGACCAGAAGCCATACAAAAGTTAAAGAAGCTGTTTGAAGCAGGTCATTCGCCATCCACAGCTCTGGACGTTTTAAAATACGACCTCCAGCTCGAGCTTGGAGAGGATTATGCGTATGCATCAGCAGACCGATCCATCTGCCCTGACATTCAGTTTTGCTACAGGCTGTACCACCAAGTTTCTAAGTCTCTCAGAGAAGCCAGTCCATCCTCTTCCATTCTCCCCACCCAAGATACAACCACAACCTGGGTAGCAGCTGATCCGACTGGACAGACATGCATCATGGAGCATGAGATTGTCACCACAGAAGtttcagaggAGGACAATCCCACAGACAAGCTGAAGTCGTGCTTATCTGATCTGTGTGACATTATTGAGAAACAGCCGAGTGTGTGGTCTGCAACACAGGACTTTATCAAGGGAATTGAACGGGTCCAGCACAACCCTGTCAAGCTAGCGTCAGCCATGCACGCCTTTGGTCGCTACAGCTGTCTCCTAATGAAGAAAAGGGCTAAAACTATGCGAAGGGGTTCTCAGTGTGCTGGACTTGCCATTACTGCCCAGCCAACAGCAGTGACCAGGAGGAAGCCCAAGCTTGGTGGAAGGCGACGGCTGACGGTGGGCAGACAGAGCAAGACTACTTCAGGGCCGGACCATGAGTACAGTCAGccagaaaaaagacagagatgCTCAGGGCCTCATGGTTTTTCACACGGCATGGCAAAAACCAAATAACAAAATAGCTTTAATAAATTAGTTTTAGTATAGCAGTTGTGGCCCATCACCCCTTTGCCTGAGAGGAGATAGACATGAGCTTGAGTGCTATTTCATATGGGTGTATTTTGTtcaatgtatataattttttacagACATATAAAATGGGCTTGCTGTCTGATTCATTTTACAAACCTCACCTATCACCACACCTCCAGTTATGCCCACAATTCCTAAATCTGCacttatatttttgtatatcaTGATTCTTTGAGATGTAACAGAATGGCACAACTCTCACTGTCTACTCTAACAGCTAACTTCACATTTATGTTACACTATAGATTGCTTGATAACTCCTGCATATATAAAGATAGAAATTTGACTTTGCTCTGTAAAAGAAATTTTCATTCCAACGTACAGGCTACTGCTGTTTCAATGAAATTAGCTTCAGTACAAGCTTTCTTCTTGCATTCTACAACAAGATTCCACAAGCTTCACCTTTTCTCAGAGTGTGACAGAGTGACACTTGCACTGAAGTTGACTTTGTagagaaatgaattaaatgtggCCCGAATTGATGCTAACAGCTTTGGATAATGATGCAAGCGTGTGCACATTCGGTGAATGTAATGTATGCTGTAAATGAATTCTATAAGATGATAAAGTTTAAGAGGAATGAATCTTTGTTAAATACATCAGTGCTCTTCAAACTGAGTTAGTATCTCTGTTTGGAAGTGTGTATCCTTCAGTGCCCTTAAATAAGTGCATTATGAAAATGCTGTTGTGAAAAAGAGCCAACAGGTTTTGTTAAATGAGGAGTTAAAAAagtctcttttttgtttgtggctcatttttttaaaacaattaattattgtactttttgaAAAAGCTTGAATTGAATTCTCCATTTCTAGGCTGATGCGTAGTGATGTTCTGTTGCTGCAAAACATGTTTGATATCTTCAAAAGTTTACTCTTGCTTGGACCCATGGTTATCTATGCTAAATTATACAAGCTTGTGTATAatgaattttgtttgtttacatgagTGGATAATAGTGAGTtatcaaaattttaatttgtgtaaacACGTTAATATATGATTGCCCGCTCATGATAGATATCAAGTTTAACTAAGCATGATCTGTTTGGTAGATTCAGATTCTGTAACAAGTGCCTAAAGACATTGTGCTTACATTGTGGTTTACTTGGTAACCCCAGTAAACACTAGAATATAAGCTTCCAATATAGTGGAAACTTTTTGCTTGcagagtttaaacacacacattcccacccACCACATATCCTACTGGCTAGCTGCAATTACAGCTCATTTTGAATTCTTGACCTGCTTTTAAATGAGTCACATTACAGTGCAGGATTAACTGAAAGGTTACTGTAGAAGTCATATTCAGTCATTCATAAAATAACGGAAATTTTGTTCCCACATTAGTTTCCTCTGACAAAGTTTTCATACCCACCCCAAATTTTCAACTCCAACACCTGTGTCTGTTTAGGAGGTGTTGTACAGTATAACACAAACTGTGCACAACTCTACAGTCACTCCCCATACCCAAACTGTATTCAAAATAATCACAATTCAGAATAAATACTGATTGGtgggtaaggaataaaacacaactgggcatgctattatagaaaaatacacAACGACGAGGTAGTGTGATTTTTCAAGAAAAATTCTGAAGTGTCTAATTCCTGTATAGTAGCCACTGCAATGGCCCAAACATTAAAActgcttgctttttttcccata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917248.2 False 3173 mRNA 0.41 7 9401685 9408661
XM_034310057.1 True 3238 mRNA 0.41 7 9401685 9412610

Neighbor

gene id symbol gene type direction distance location
adsl adsl coding downstream 10325 9380674 ~ 9391360 (-)
tmem150b tmem150b coding downstream 22089 9373152 ~ 9379596 (-)
pdgfbb LOC108260470 coding downstream 66055 9321259 ~ 9335630 (-)
pvalb6 pvalb6,LOC108258409,LOC108412390,LOC100701083,LOC103371237,LOC107690741,LOC101478422,LOC107602319 coding downstream 115745 9247782 ~ 9285940 (-)
cbx6b LOC108274693,LOC108260787 coding downstream 170437 9208211 ~ 9231248 (-)
cbx1a LOC108279860,LOC108413138,LOC103037352 coding upstream 77738 9490348 ~ 9501580 (-)
hoxb1a hoxb1,LOC108274656 coding upstream 241833 9654443 ~ 9658406 (-)
hoxb2a hoxb2,LOC107687781 coding upstream 256999 9669609 ~ 9673077 (-)
hoxb3a hoxb3,hoxb3a,LOC108278472,LOC107687775,LOC107740615,LOC107582888 coding upstream 263152 9675762 ~ 9722637 (-)
hoxb4a hoxb4,hoxb4a,LOC107740620,LOC107585041 coding upstream 285421 9698031 ~ 9702424 (-)
G208189 NA non-coding downstream 298559 9102911 ~ 9103126 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding downstream 338178 9061580 ~ 9063507 (-)
G208153 NA non-coding downstream 370707 9030525 ~ 9030978 (-)
G208151 NA non-coding downstream 376702 9024761 ~ 9024983 (-)
G208145 NA non-coding downstream 394426 9007000 ~ 9007259 (-)
LOC117598997 NA non-coding upstream 29376 9441986 ~ 9446104 (-)
G208391 NA non-coding upstream 82013 9494623 ~ 9505750 (-)
G208473 NA non-coding upstream 333886 9746496 ~ 9748039 (-)
LOC117599011 NA non-coding upstream 417017 9829627 ~ 9927942 (-)
LOC113528446 NA non-coding upstream 424640 9837250 ~ 9838412 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 198045 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 258814 9112966 ~ 9142871 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 688367 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 1111877 8279767 ~ 8289808 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 51721 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 317241 9729851 ~ 9732566 (-)
tecpr1b LOC108276900 other upstream 1038114 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 2229547 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 2287239 11699849 ~ 11701172 (-)

Expression


Co-expression Network