kctd13 (kctd13,LOC107739382,LOC107567055,LOC107552471,LOC107660789,LOC107755045)


Basic Information

Item Value
gene id kctd13
gene name kctd13,LOC107739382,LOC107567055,LOC107552471,LOC107660789,LOC107755045
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8929611 ~ 8936540 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917257.2
CAAAGTGACAGACATGTGTTTTGACCAATCGGCTGTAGAGTTTCCTGCACCTTGGAAAGTACTCAAGAGGAAGCGAGTAGTGGATGAGGACTGAcggaaaataaaactgaaaacacaaatattgaaaataacatttcgtatataattattaatgtaaaccctctgttttttaattgtgtttgaGCTTCAGGGCGCTTATTCATTCACGCAGCTCGACAGTACATTACAAGGGTTGGACTGCTTTTTCCTGATGTCTGCTGAAGCTTCTGGTGGGAATGTGGTGCCGGAGCCCAGCTGTGCCCCTCCGTCCCCCAGCCATGGCGTGGAGAAGAAGGCAGGACCAGGTCTGGCTGGCAGTAATTACGTGAAGCTGAACGTTGGTGGATCCCTGCATTACACCACAGTCCAGACCCTCAGCAAAGAGGACAGCCTGCTCAGGAGGATATGTGACGGCAGTGTGGAGGTGACCATCGATTCAGAAGGCTGGGTGGTGTTGGACAGAGGTGGACGCCATTTCTCCCTGGTGCTGAACTTCCTACGAGATGGCACTGTGCCACTCCCCGAGAGCCAGAGGGAGCTGGAGGAGGTACTGAAGGAGGCGCAGTACTACAGACTGCAGGGTCTCATCCAGCACTGCCTTTCCACACTGCAGAAACGCAGTGAGGTCTATGAGGGAGGCTGTCACATCCCTATGATCACCTCTGCCAAGGAGGAACAGCGAATGATCGCCACCTGCAAGAAGCCTGTGGTGAAATTGCAGAATAATAGAGGGAACAATAAATATTCCTATACCAGTAACTCAGATGACAACTTGCTGAAGAACATTGAGCTGTTTGATAAACTGGGGCTGCGCTTTAATGGTAGAGTGCTTTTCATTAAAGACGTGCTCGGAGATGAAATCTGCTGCTGGTCCTTCTACGGAGATGGACGGAAGATCGCTGAGGTTTGCTGTACCTCCATCGTTTATGCGACCGAGAAGAAACAGACCAAAGTTGAGTTCCCAGAAGCTCGCATCTTTGAAGAAACCCTAAACATACTAATCTATGAGAATGGTCGGGGCTCTGGTCATGGAGGCATGGGTTTATTGGACTCAGGTGGTGTCTCATCTCCAGGTGTGGGTCAGTCAGAGGAAGACGGGGCTGGTGTGGGGGGTGGAGACAGACGTGTGAGGAGGATCCATGTACGGAGGCATATTATGCATGACGAGAGGGGGCATGGACAGCAGACTGTGTACAAGGACTGAAAGCAGGGATGGAGGGAGAAATGATAAACATGAGTAGTAAAAAGAGCCTAATGGTACTATAACAGGACAATTGTGAATAATTCATATGCAGGGACTTGGATACAAGGATGGATGGGTGGGGGGTTGAGCAGCAATGGGAATCGATCTTGGGTACAGTAACACTGCACTAAGAAATAATCTCAAGAGCCACAGTgtggtttctttttattttatttttgaggaTGAATGTATATCATTCTgagttttgctttatttttatttattattctgttaaTTTATTGTCCATAATTttcaacttttttaaaaaaaagaatatgcgTGAaatatcttgtgtgtgtgtgtgtgcaagaatTGTGAATGCGTAATGATGAACTGTGATGTTTTTCTGTGGggatgtgtgtgttggctgACAGCTGCAGAGGTACATAGAGACGACTCATTCTTGACTAACGTATGATGCATGTTCCCACTAGAGTGGGTGCCGTCCTGGACCTTTCCTTAAAGTATCCCAAAAGAAGTGTTTAAGTAATCCTTATATAAACACTCCACTGTTGTTCTTCATCAACTGTGTctgtagcgtgtgtgtgattgcgaCAGACAGGAATTTTCTATgtgtttccctgtactgaggAAAGGGGGAAAACCTGTTCACTCAAAGCACACCTATAATGAGAGTATAAAGGCAGTTGCAAATTCCTGTCAGTAAGATACagtgcatataaaataaaactacaacCGTTATGTTCTAATAATAAAGAAGAGGCAGACCTGAGtcttaaaaaaaagctgttcttatgtggttttatccaactttccaaCACTTTTCTACAAGATTTTTGGTATCCATGCCCAATAAAGTCTACACAACTATGCTGGTAACCCATAATGACAACTTCTTCCTTAGAACTAAGTAGTCTTAGGGAAGAATATGTAGTGGTTTAGATCTTAATTTACAATACCTTTGAATAAGGGAATTCATGTatgcataaatgtttatagacCGAAATAAACAAATACCCTTAGACTTCCAGTATAAGCGAGCATCTTTTCAGTACAGGAAAACGCATCAGCAAGTTttatttgtaacagtcacgCATTTGCTACAGATattttagatagatagagtttaaaaacactggagtatttcTTCAAGGAGCTACATCTCAGTTTAGAAATCTGCTATTGTTTCATCAAGCAGCCAGGCAATGTATGTTTTCAGTTTAAATCTTTCAAAAGCCCTATAAACCAGTTATATAAGCATAcccaaaatgtgtgtgaatatggaATTATCTGACCATTTACTTGAAGACTGACTAGAAGGACAAACTCTTGGGAAACTGACAAAATGTTATGCTGATTTGGCCATAGCAGGTTTTCTATAGCCAGAGAATCATCCAAAGGACTGACAAACCTGGGCAGGAATTACTTTTATAGATCATTGTATACAAAACTGCCAAACATTGTTGCATATCCACTGCAAAAacttccatttttgttttgggTATAAGGTGGCAG

Function

symbol description
kctd13 Predicted to contribute to ubiquitin-protein transferase activity. Involved in negative regulation of Rho protein signal transduction. Acts upstream of or within central nervous system development; neural precursor cell proliferation; and positive regulation of apoptotic process. Predicted to be located in nucleus. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in brain; forebrain; hindbrain; midbrain; and retina. Orthologous to human KCTD13 (potassium channel tetramerization domain containing 13).

NR:

description
PREDICTED: BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1-like isoform X1

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0051260 protein homooligomerization biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0006811 ion transport biological_process
GO:0007420 brain development biological_process
GO:0061351 neural precursor cell proliferation biological_process

KEGG:

id description
K15074 BACURD; BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917257.2 True 2758 mRNA 0.43 7 8929611 8936540

Neighbor

gene id symbol gene type direction distance location
hirip3 hirip3,LOC107689078,LOC107552470,LOC107739380 coding downstream 1700 8921509 ~ 8927911 (-)
taok2a taok2,LOC108278428,LOC107590788,LOC107710882 coding downstream 94875 8811408 ~ 8834736 (-)
cdipt cdipt,LOC107710884,LOC107582865,LOC107678876,LOC107684638 coding downstream 120630 8805242 ~ 8808981 (-)
LOC113528536 LOC108278430,LOC108410602,LOC100535691,LOC107710886,LOC107678873,LOC107582858 coding downstream 126756 8795520 ~ 8802855 (-)
nlk1 nlk1,nlk,LOC108260705,LOC108410603,LOC103027970,LOC106583944,LOC104935892,LOC107678874 coding downstream 136196 8783399 ~ 8793415 (-)
sez6l2 sez6l2,LOC107660756 coding upstream 1023 8937563 ~ 8953319 (-)
pitpnbl pipnb,LOC108410611,LOC103031125,LOC107552474,LOC107739385,LOC105028335,LOC106600642,LOC107754658 coding upstream 36747 8973287 ~ 8983377 (-)
lat LOC108257259 coding upstream 86006 9022546 ~ 9032032 (-)
spns1 spns1,LOC107754623,LOC107567150,LOC107660866,LOC107552478,LOC107739389,LOC107689070 coding upstream 96304 9032844 ~ 9044136 (-)
nfatc2ip NA coding upstream 109105 9045645 ~ 9049091 (-)
G208063 NA non-coding downstream 15052 8871976 ~ 8914559 (-)
G208062 NA non-coding downstream 56109 8860563 ~ 8873502 (-)
G208016 NA non-coding downstream 280248 8574635 ~ 8649363 (-)
G207895 NA non-coding downstream 394899 8534503 ~ 8534712 (-)
G207860 NA non-coding downstream 436570 8492815 ~ 8493041 (-)
G208097 NA non-coding upstream 18902 8955442 ~ 8955655 (-)
G208098 asphd1 non-coding upstream 19326 8955866 ~ 8956397 (-)
G208099 NA non-coding upstream 20721 8957261 ~ 8958211 (-)
G208145 NA non-coding upstream 70460 9007000 ~ 9007259 (-)
G208151 NA non-coding upstream 88221 9024761 ~ 9024983 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 216293 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 639803 8279767 ~ 8289808 (-)
LOC113528661 NA other downstream 645019 8284474 ~ 8284592 (-)
slc4a1a LOC108279353 other downstream 661973 8249885 ~ 8267638 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other downstream 1224119 7559767 ~ 7705492 (-)
LOC113527952 LOC108260010,LOC108274064 other upstream 176426 9112966 ~ 9142871 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other upstream 259956 9196496 ~ 9203640 (-)
prr15la LOC108273894,LOC108412372 other upstream 473264 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 527791 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 793311 9729851 ~ 9732566 (-)

Expression


Co-expression Network