msl1a (msl1)


Basic Information

Item Value
gene id msl1a
gene name msl1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9912768 ~ 9917101 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917258.1
AGTCGGTGGATAGGCACATTCGGGTGGGGACGAGGGGTTTAAAACACAATGTTAGTGGAAATGAGTGACAAGGAGTTAGCCAGTAGGTGGAATATGTGGTGAAAACCCCGTGCTGTGTGTTGTTGGGTTTAAAATGGCGTCATTGCGTACCCGTGCAGTCAAAGACGCTGCTATAAGTGACTGTCATTGTTTTTGCTGAGACTAAAATGGTGGACACGGCTGCAGAGTCGCTGCAAGCAAGCTAACATGACGCTGTGTTTATGTTCCGAGTAATATGTGTTGTGCTGTTTGAGAGAACTACGAGACATAAAAACTGGGGACGTATAGTACCTTTTGGGATCAGCATGGATGTGGACAGGGTGGCCTGGGCGCATGGCAAACAGGCACTAAACCCCCTTTAATCACAGCGGTGGGTTTTGGTGAGTGCCTTTGACTCGCCATGACTATGCGAGCCACTGTGTTCAAAAGTGGAGGAAACAAGCTGGACACGGACACCGGTGACCAAGCTAAAAAACAAGAATCTCAGACCGGCTCAAAGAAGGAGACTTCTGAGTGTTTTGTGCGAGTTCCCGGCATCCTGAGCAACATTCACAATAGCACTGGGCAGCACTTGCACAGCAAAGCTAAGACCCTTTCATCCAGCCAGAGCACTGCAGGCAGACCTGTTCTGTCACCAGCGGTGAGGAGGGGACAGGAGGAGAACTGGGTGAACCTGGGGGCTTTGACTCTTCCGCTGACCAAGCAGATGGGGGCTGAGGGTACCCCGGTCAAAAGCAAGGCACTATTCGGACACACCAGTCATAACCACATGGGCAAGATGGATCCAGTGGCATCAAATGGCAGCAAGCAGCCTAGGAAGGCAGGgccaggaggaggagcagcggTGACGGGAGTCCCCTCACCGGAACATGGTTCTGACGGAAAACGGCGGAACGCGATTAAGGGTACAGGCCACAGTGCCACCCAGACCAGCTGCATCCGTCAGATCGTGCTGCTGCAGCTAGAACTGATcgaacagcaacagcagcaactgcAGAACAAGAACAAGGAGATAGATGACCTCAAAGCTGAAAAGGAGATGTTGGTGGCAAGGATCGAGCGCATGGAGCGGCGGTTACAGATGGTGAAGAAAGATGGCGTCGAGAGTCGTCCCACTCCCACTCCTCGCCGCAGGGAGTCTGTAGAGGCTGTCCCATCTGAAGGCACTGGGCAGTCTGAGGGTCAGAGTCATACCCCTCGACAAACTAATTTTGACAGAAGTGGCAAGAATCTGAAAAGGAGATTCCTTTTTCAGGAATCCACGATGTCAAGGTCCAAACGTAGGCATACTAAAGCACCCGCTCCAAAAGAAAGCCAGGCTCTGGAGGAGTCTCAGGAGGAGGTGGAGCCTGAGGTAAGGTCACCTGGTTCCTCCCTTGTAGAATCAGAAGAGCTGCCGTACATGGCTACCACTGAGATGTATCTCTGCTGCTGGCACCAACCTCCACCTTCACCATGGAGAGATCAGTCTCCTGTGCAGGAGGACACAGTTGCTGTCCCTTCTTGGCGAGAGAGCATTGTGGAACCTCTGGAGGACAAAAAGGCAGTTGATATCATGGAGAGTTTGGATGACAGTGTCTTTCTGAAGCGTCATTCAAAACTGGAGCTGGATGAGAAGAGACGAAAAAGGTGGGATATACAGCGTATTCGGGAGCAGCGGATGTTCCAGCGCCTTCAACAGAGAATGAACAGGCAGAAGGTGATTCAGGAGTGTGAACCAGAGCTGCTCTCCTTCTACCCTGAAGCTGAGGATGTGGAATCTGTAATGATCACTCCTTTCTTGCCAGTGGTGGCGTTTGGCAGGCCTCTGCCTAACATTAAACAACAGAATTTCGAAATACCATGGTTAGATGAGCGTAGCCGTAGCCGACAAGAAGTGTCTAAAAAGAAGACGCCCCATCGGACCTGCCGCAAGTGAAGCAGTCCTCTTTGAGTGAGCACACAATGTTAAGAAGAGGCTGAATCAGTTCGACTGTCCTGTGCTGTATTCTGTGTGCTGTAGGATCATCTTGGCAATGTTTTACATAGTTGATTGCCCTGAAGGCACCTTCAGTCTTTAAAGAGCTGCTCCTGGCTGAAGCCCGTTTGGCACTCTGAATGGCACACCAGCTACAAGATGGATGAAAGCAGAGCTGTCAAAATTTCATACTCATTGTTGCACTGCAAAATGTGACATTGCTGTGTTCTGGTTGCTTTGGTATTTTCCCATGCAAGTTAGCTTTTAAAAGTGCAGTATGGACCAAAACTCACGTCATGATCAAATGCAGTTTAAAAGAGAATGTTATTTAGTCAgtgtttttgcatttctgttCATTGTGAATGGGTGACTTCTAAAACAATATAGTGTAATATCTTGTAACATAGTGTTGATTCtgcaaataaatgaaagataaTCTAATGCGcctaaagaaaatatttcaggtattaaaatatcttaaaatta
>XM_026917260.2
TCGCCAATCTTCGGCGTCCAATCAAATCTCGCGATCTATGACTTCAACGCATGCGcgctttttgtattttaaaagcACTTGAGAAGCTCGGGGATCAGCATGGATGTGGACAGGGTGGCCTGGGCGCATGGCAAACAGGCACTAAACCCCCTTTAATCACAGCGGTGGGTTTTGGTGAGTGCCTTTGACTCGCCATGACTATGCGAGCCACTGTGTTCAAAAGTGGAGGAAACAAGCTGGACACGGACACCGGTGACCAAGCTAAAAAACAAGAATCTCAGACCGGCTCAAAGAAGGAGACTTCTGAGTGTTTTGTGCGAGTTCCCGGCATCCTGAGCAACATTCACAATAGCACTGGGCAGCACTTGCACAGCAAAGCTAAGACCCTTTCATCCAGCCAGAGCACTGCAGGCAGACCTGTTCTGTCACCAGCGGTGAGGAGGGGACAGGAGGAGAACTGGGTGAACCTGGGGGCTTTGACTCTTCCGCTGACCAAGCAGATGGGGGCTGAGGGTACCCCGGTCAAAAGCAAGGCACTATTCGGACACACCAGTCATAACCACATGGGCAAGATGGATCCAGTGGCATCAAATGGCAGCAAGCAGCCTAGGAAGGCAGGgccaggaggaggagcagcggTGACGGGAGTCCCCTCACCGGAACATGGTTCTGACGGAAAACGGCGGAACGCGATTAAGGGTACAGGCCACAGTGCCACCCAGACCAGCTGCATCCGTCAGATCGTGCTGCTGCAGCTAGAACTGATcgaacagcaacagcagcaactgcAGAACAAGAACAAGGAGATAGATGACCTCAAAGCTGAAAAGGAGATGTTGGTGGCAAGGATCGAGCGCATGGAGCGGCGGTTACAGATGGTGAAGAAAGATGGCGTCGAGAGTCGTCCCACTCCCACTCCTCGCCGCAGGGAGTCTGTAGAGGCTGTCCCATCTGAAGGCACTGGGCAGTCTGAGGGTCAGAGTCATACCCCTCGACAAACTAATTTTGACAGAAGTGGCAAGAATCTGAAAAGGAGATTCCTTTTTCAGGAATCCACGATGTCAAGGTCCAAACGTAGGCATACTAAAGCACCCGCTCCAAAAGAAAGCCAGGCTCTGGAGGAGTCTCAGGAGGAGGTGGAGCCTGAGGTAAGGTCACCTGGTTCCTCCCTTGTAGAATCAGAAGAGCTGCCGTACATGGCTACCACTGAGATGTATCTCTGCTGCTGGCACCAACCTCCACCTTCACCATGGAGAGATCAGTCTCCTGTGCAGGAGGACACAGTTGCTGTCCCTTCTTGGCGAGAGAGCATTGTGGAACCTCTGGAGGACAAAAAGGCAGTTGATATCATGGAGAGTTTGGATGACAGTGTCTTTCTGAAGCGTCATTCAAAACTGGAGCTGGATGAGAAGAGACGAAAAAGGTGGGATATACAGCGTATTCGGGAGCAGCGGATGTTCCAGCGCCTTCAACAGAGAATGAACAGGCAGAAGGTGATTCAGGAGTGTGAACCAGAGCTGCTCTCCTTCTACCCTGAAGCTGAGGATGTGGAATCTGTAATGATCACTCCTTTCTTGCCAGTGGTGGCGTTTGGCAGGCCTCTGCCTAACATTAAACAACAGAATTTCGAAATACCATGGTTAGATGAGCGTAGCCGTAGCCGACAAGAAGTGTCTAAAAAGAAGACGCCCCATCGGACCTGCCGCAAGTGAAGCAGTCCTCTTTGAGTGAGCACACAATGTTAAGAAGAGGCTGAATCAGTTCGACTGTCCTGTGCTGTATTCTGTGTGCTGTAGGATCATCTTGGCAATGTTTTACATAGTTGATTGCCCTGAAGGCACCTTCAGTCTTTAAAGAGCTGCTCCTGGCTGAAGCCCGTTTGGCACTCTGAATGGCACACCAGCTACAAGATGGATGAAAGCAGAGCTGTCAAAATTTCATACTCATTGTTGCACTGCAAAATGTGACATTGCTGTGTTCTGGTTGCTTTGGTATTTTCCCATGCAAGTTAGCTTTTAAAAGTGCAGTATGGACCAAAACTCACGTCATGATCAAATGCAGTTTAAAAGAGAATGTTATTTAGTCAgtgtttttgcatttctgttCATTGTGAATGGGTGACTTCTAAAACAATATAGTGTAATATCTTGTAACATAGTGTTGATTCtgcaaataaatgaaagataaTCTAATGCGcctaaagaaaatatttcaggtattaaaatatcttaaaatta

Function

symbol description
msl1 Predicted to enable chromatin binding activity. Involved in histone H4-K16 acetylation. Located in nucleoplasm. Part of MSL complex.

NR:

description
PREDICTED: male-specific lethal 1-like 1

GO: NA

KEGG:

id description
K13163 MSL1; male-specific lethal 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917258.1 True 2482 mRNA 0.49 9 9912865 9917101
XM_026917260.2 False 2237 mRNA 0.49 9 9912768 9917101

Neighbor

gene id symbol gene type direction distance location
si:dkey-225f5.4 LOC108258433 coding upstream 19272 9886784 ~ 9893496 (+)
igf2bp1 igf2bp1,LOC108412303,LOC107717213,LOC107667758,LOC107582884,LOC106607494 coding upstream 32883 9840890 ~ 9879885 (+)
ube2z ube2z coding upstream 85759 9814084 ~ 9827009 (+)
atp5mc1 atp5g1,LOC108256653,LOC108413019,LOC107740625,LOC107662391,LOC107585044,LOC107582887 coding upstream 101187 9806798 ~ 9811581 (+)
eve1 LOC108275867,LOC108412315 coding upstream 130846 9779523 ~ 9781922 (+)
casc3 casc3 coding downstream 861 9917962 ~ 9926203 (+)
LOC113528352 snu13,snu13b,LOC103040872,LOC101154660,LOC105910236 coding downstream 275703 10192804 ~ 10195206 (+)
LOC113528384 slc25a17,LOC108412891,LOC106601749,LOC107666095,LOC107743042,LOC107548713 coding downstream 297944 10215045 ~ 10222874 (+)
helz helz,LOC107691233,LOC107665819 coding downstream 381786 10298887 ~ 10341715 (+)
lmtk2 lmtk2 coding downstream 508958 10426059 ~ 10448685 (+)
G208504 NA non-coding upstream 29641 9864977 ~ 9883127 (+)
G208507 NA non-coding upstream 53886 9846084 ~ 9858882 (+)
G208472 NA non-coding upstream 164758 9746285 ~ 9748010 (+)
G208415 hoxb9,hoxb9a,LOC107662432,LOC107585091 non-coding upstream 173902 9737009 ~ 9738866 (+)
G208430 NA non-coding upstream 178721 9732608 ~ 9734047 (+)
G208488 col1a1a,LOC108279263,LOC107585052,LOC107740634 non-coding downstream 122308 10039409 ~ 10061965 (+)
G208700 NA non-coding downstream 304182 10221283 ~ 10221539 (+)
G208701 dxo,LOC107752708,LOC107666098,LOC107691245,LOC107743041 non-coding downstream 308482 10225583 ~ 10226503 (+)
G208783 NA non-coding downstream 424807 10341908 ~ 10342224 (+)
G208911 NA non-coding downstream 909924 10827025 ~ 10828913 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 849355 9061563 ~ 9063413 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 954668 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 1904357 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 2059259 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 2590803 7309207 ~ 7321965 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 27205 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 432301 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 1362979 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 1650018 11567119 ~ 11577823 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 2132306 12049407 ~ 12086058 (+)

Expression


Co-expression Network