rpl27 (rpl27,LOC107551168,LOC106601555)


Basic Information

Item Value
gene id rpl27
gene name rpl27,LOC107551168,LOC106601555
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2187365 ~ 2195026 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917270.2
CACGATCacgtatgaaaaaaaaaatctaagcgGAAATACGTCACTTCTCTCTGGTGTCAAGGGTCACGCGCGCTCTGCCTACTTCCTTTCCTGTTATCGTCGGCCACTGAAAGCCATCAACATGGGTAAATTCATGAAACCTGGGAAGGTGGTGATGGTCCTGGCTGGACGTTACGCCGGACGCAAAGCCGTCATCGTCAAGaatatcgACGACGGCACCGCTGACCGCCCTTACAGCCACGCCCTGGTCTCGGGTATCGACCGTTACCCCCGCAAAGTCACCGCCACCATGGGTAAGAAGAAGGTGGCCAAGAGGTCCAAGATTAAGGCCTTCGTTAAGGTGTTCAACTACAACCACCTGATGCCAACCAGGTACTCAGTTGACATTCCTCTGGACAAAACCGTCGTCAACAAGGACGTGTTCAGGGATCCTGCTCTGAAACGCAAGGCCAGGAGGGAGGCCAAGGTCAAGTTTgaggagagatacaAGACCGGCAAGAACAAATGGTTCTTCCAGAAGCTCCGATTCTAGGCATTCAATGGTTTCTCTAATAAAGCTGTAAAAATCC

Function

symbol description
rpl27 Predicted to be a structural constituent of ribosome. Acts upstream of or within erythrocyte differentiation. Predicted to be located in cytoplasmic side of rough endoplasmic reticulum membrane. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 16. Orthologous to human RPL27 (ribosomal protein L27).

NR:

description
PREDICTED: 60S ribosomal protein L27

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02901 RP-L27e, RPL27; large subunit ribosomal protein L27e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917270.2 True 569 mRNA 0.51 5 2187365 2195026

Neighbor

gene id symbol gene type direction distance location
grna NA coding upstream 12754 2130528 ~ 2174611 (+)
LOC117598829 NA coding upstream 31516 2155599 ~ 2155849 (+)
bcat2 bcat2,LOC108278805,LOC108434932,LOC107680854,LOC107561362,LOC107687634,LOC105897681,LOC107729480 coding upstream 73296 2092559 ~ 2114069 (+)
hsd17b14 hsd17b14,dhb14,LOC106606926 coding upstream 95912 2084552 ~ 2091453 (+)
slc1a9 slc1a9,LOC108278773,LOC108434930,LOC107551162,LOC107680867,LOC107729473 coding upstream 126295 2012233 ~ 2061070 (+)
slc25a39 LOC108276595,LOC108434938 coding downstream 3723 2198749 ~ 2212411 (+)
nbr1b LOC108276620,LOC108437991 coding downstream 44583 2239609 ~ 2258256 (+)
LOC117598986 LOC108276106,LOC108276032 coding downstream 427144 2622170 ~ 2691714 (+)
hspb9 NA coding downstream 660370 2855396 ~ 2856253 (+)
LOC117598987 LOC108276032 coding downstream 713146 2908172 ~ 2917545 (+)
G203955 NA non-coding upstream 28082 2154436 ~ 2159283 (+)
G203935 NA non-coding upstream 178759 2008401 ~ 2008606 (+)
G203913 NA non-coding upstream 200150 1919023 ~ 1987215 (+)
G203906 NA non-coding upstream 264886 1905839 ~ 1922479 (+)
G203898 NA non-coding upstream 315805 1856423 ~ 1871560 (+)
G203965 NA non-coding downstream 3087 2198113 ~ 2198333 (+)
G203973 NA non-coding downstream 29523 2224549 ~ 2227164 (+)
G203967 NA non-coding downstream 63456 2258482 ~ 2260374 (+)
G203996 NA non-coding downstream 193958 2388984 ~ 2392499 (+)
LOC117598836 NA non-coding downstream 328962 2523988 ~ 2524878 (+)
rundc1 rundc1 other upstream 1201 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 199450 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 297850 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 567391 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 825905 1353329 ~ 1361460 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 672742 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 808582 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 997678 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 1339263 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 1771707 3966733 ~ 3986284 (+)

Expression


Co-expression Network