tmem150b (tmem150b)


Basic Information

Item Value
gene id tmem150b
gene name tmem150b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9373152 ~ 9379596 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917279.2
TTTCACCAAAGGTTTCAGTTTTTAACTAGCTCTTTTAGAAATGTTAGATGTTTGCTCATCACAAAGTGATGAAAAATGAGCTGTGACTGTTTGCAGTGTACGGCACAGTGGTGCCGCAGGTAATGTTGCTGTCTCTCAGATCCCCGGTTGTGTTTGTATGGGTTTCATCTTTGTTCACTGCTTTCCTCCTATCCCCAAAACATGACTACAATAAATTgcccccaggtgtgaatgagtgtgtgaatgtgtgtgtatggtgcccttaAATGGACTGGTGTTGCTAAAGCATTCAAGAGCAATATCATCTGTCATGAAGAAGTTCATCAGTTCGTCTCAGTGTGCctaatttctatttttatttccacacaTTACCAAACACTGAGGCTAGTCTGTATTGTTAGAGACACACCCAAAATGACATTGCCTCTAAATTCGaaactatcatcatcatcatcatttagaCACCTGCAAATGTGCTGTATTTGGTCTCTGGTGTAATCCATTTCTTATTCATATCACTTGGGTAATAAAACTGTCAGCGAGGGCAAAGTGCAGCCTTCCCTGATAAAACACTGAGATACCGTATAATCCATATGGATATATGAGCCTCGGAACGAGCGAGGAAGAGCTCAAACACAAGAGGACACATTCAAATACAAAAACCAGGGCCACGCATATCTGATTGGTCCATCATGTGGACATGGGCgctacttcctgttttcctggCAGTGTTTGGCACTCTAGGCATTTGGACTGTGTTTGGTTTAGCTGTGTCTAATGAGACAGTGAATCTGACAGTCGAGTTCCCATACATCAGCACATGTGGCACGTATAACCCTCAGAGCTGTCTCTTCTCCCAGATATGCAACATCTGCTCTGTGCTAGctCTGTGGATTGTGATTATAAGGTTCCAGCAGGTGAGGGATTTGAATTGTTCGTCACGTGTTAACACAGCCAGTCTAGTTCTGGGGTTCATTTCATCTATAGGAATCTCCATCCTGGGAAACTTCCAGCAATCGGTGGTGATGGGAGCTCACTTGTTGGGTGCGTTCCTGGCATTTTTTGTGGGTCTGGCATACTTTTGGCTTCAGGTGTGGCTCACTTACCACGCAAAACCATCATATGACAAGAAGTGGGCAGGGCCTGCACGGATTATTTTCTGCAGTCTTTGCACTTGCTTGGTTCTTGTCATGACCGTGCTCCATAAAACAGGCTACCGATCTGCAGCTGCCATAAGTGAGTGGGCTTTGGTCATGTGCTTCTTCATGTTGTTCGGCATTTTCTCTGCAGAGTTCCGCCACATTGACTTCCATGAACTACACGTGCAGAACGAGGCGTTCAGCAAAAGTAGTCTTGAGTTTCCAACACAGACAAGTAATATGGTGGCACTGACTGGACACTTAACCAGCACACAAACACCCGCTGCCAAGTCTGACCCACAGTATGGATGAAACAAtgtataatattgtattgtatgggTTTATGCTGCTAATATGGACCTAATGTTATAGAATAAGAGAACTTTGGTCTTAGTGAATTTTCATGTTTTACTAAAgatgtataatttataaacCCAACCCATTCTTTCCAGCTTTGACTGATTTGTAAGTCTAGCTGCTCACATTTATTAACGACTTTGCTATCATTGATATGTTTATATCTtgttgaaataataaataaaaatacttgtCCTCATTGCCCAAGCATGTGCTGTGCTTAGCGCTGATGTCA
>XM_026917280.2
TTTCACCAAAGGTTTCAGTTTTTAACTAGCTCTTTTAGAAATGTTAGATGTTTGCTCATCACAAAGTGATGAAAAATGAGCTGTGACTGTTTGCAGTGTACGGCACAGTGGTGCCGCAGGTAATGTTGCTGTCTCTCAGATCCCCGGTTGTGTTTGTATGGGTTTCATCTTTGTTCACTGCTTTCCTCCTATCCCCAAAACATGACTACAATAAATTgcccccaggtgtgaatgagtgtgtgaatgtgtgtgtatggtgcccttaAATGGACTGGTGTTGCTAAAGCATTCAAGAGCAATATCATCTGTCATGAAGAAGTTCATCAGTTCGTCTCAGTGTGCctaatttctatttttatttccacacaTTACCAAACACTGAGGCTAGTCTGTATTGTTAGAGACACACCCAAAATGACATTGCCTCTAAATTCGaaactatcatcatcatcatcatttagaCACCTGCAAATGTGCTGTATTTGGTCTCTGGTGTAATCCATTTCTTATTCATATCACTTGGGTAATAAAACTGTCAGCGAGGGCAAAGTGCAGCCTTCCCTGATAAAACACTGAGATACCGTATAATCCATATGGATATATGAGCCTCGGAACGAGCGAGGAAGAGCTCAAACACAAGAGGACACATTCAAATACAAAAACCAGGGCCACGTGAGtgctttttcttcctttcctcaGGTTAGCTTTGCTGTACTTTCACAGCAGTCATGGACTCAGGAAGGGCTTGTTAATCAGCTGTTTAGATGTATCAGGAAAATATGCAAGATAGGTGTAATTCAGAGCAAGAGTGGGACACAACTAGTTTTGAAGTTACCATAGAACTTTCCATTGAATCTGCAATATAAATTTccataataatgatgataaatgatgttTTATCCAACTTTACTGTACCTATATTACTGTGTATTATAACCATGGACAGTATGGAAAGTGGTCTCAGGCCCGGTCTGGGTGGGGCTCTAGAAGAGTTCAGTGATACAATGACATATGGAATAGGTCTATTTGATGAAAATATACTAGATAAAAATGGAGGAGAGATTATTCCTGGGAACCTAAGTAGAACTACAGTATAATGCTATAATATACTGAATACTGATACTTCAATCtggtaataaataatttactagCCATACAGAGCAACAGTCATATAAGTAATAgagatttataaaatattaactttttaattttgtaagaACAAAATATTCCCTTTAAAACTTTTATGGTCAGACCAGATTTTGCTCATTTGAAAAAGAACTGATGCGTAGCATTTTATTTGTGGCTCTAATAACTGACTGtgagtacagttttttttttttcaatttagcTGAACTGCACCATTTTTCAAGCACTGGTTACTCCATGAAGGGGTGATACTGACTTCATAGTAacaatgtatttacaaaaagaTTGAGAATCGACTGTTGTTTTCTCTGCCATGCTATGTATGGAATGGAAAGattttgttgttgatgatggttGGCATACTCTATGGTCAGATAGATGTAACATACAATCAGTGAATTTGTAGGCAAACATGCTATAAGAGTGTGTTTGATGTACTCTGTTTTCTAAACTAGGGCATGCACAATATGAAAAGTACACTGCACAGTGGTTAAAAATCAAGTTGACTAGTATTTATGAAGCAGCAGCCTATAGAAACTAAAGGGCAGGATGTATATTGCACTAATTTTAATATTGCTTGAAAGAATTTTTCCTCATAATATAGCTGAATGCTCAAACATTAAACACCAAAAGCCAGTGTATAAATTCAGCACATAAAGACAACAGCAATCTGGAAAGTTTCCGCTAAAAAGAAAGTTTTATGACTTTTGATTAAGTCCTCTGTCAGAGTCCCAGaagttatgaaaaaaatacagttccCAAACTCAAACTACAAAAAATAATGTTGCCAAAAAAAGAATCTTCTCATAAAAAGTTCTCTGCCAAGTCAAAAAAGGATTGCTCTCCCTGCTTCTTATAATCAAAAGAGCCCCAAATGGACTGCAAAAATCTTCTTTCCAGATATAGTTCCAGTAGTGCGCAGTGCATCTGTTGATCCACAGATTTTCTTATTCATCCTTCGATTCCACAAGTCTTTTAGCTTTAAGCGGTTTGAATGCATAATGGGTGAAAGACGACACTAGCTACTTGGCTACTTAgctgtcaattttttttcttcctttttccctTGTCCCTTTTTTCAGCCACCTAAATGCTCTTTTTCCTTCCAAAAACTCCCCCTTTTCTTTTCCTATTGACCATGTTGGCCAGGCCACACCCTAATAAGGCTCAGCCAATGAAAAAATGCCAGTTTAAAATATAggcaaagaaaacatttaaataaacttaaTGAAACTCTATGAGTTACAGGACATCATAGACAATTTTGTCTTGCTTTTTACTATACAAGTTTCATTTACGTTAAAACCaacagaataaaatcaaacaatttAGCTGAACAAATGAGGTTTAAGGGCCTTGTCTAAGGTCCCAACAGCAGCTTTCTGGAAATTAACCTGGGATTTAAAATGATGGGAATTCTGGCTTTATTCAGTGAGTCAAAGCCAATAAGAGCTGACTCTTTCGGCTCCCTGATGGCTCTTTGATATTTTTTCCTGGCCAAGGTCTTTGACTATCTATTGCATCAATTGTTCAATAAAATCTTACTCACGTTCtggttattataacattatactTTGCATTGTGTTATATACTGCGTTGACAAAGACAGTAAAAATTGTACCTGCTGATCACACAGATGAGATCTGAACACGTCTCAATATTCTCACTAGAAATCAAAATCGTTATTTTGTGCCAAATAAATCAGATATTGTTAAAGTTCACTAGATGCATTTCAGTTACGATTACACCGTATGTGATTAACAGCATTAGGGAACTAAACCCTGCCAACTTATCAGCAAACCCATGAAATCATTTATTGCGAGACAGCTCACAGTGTTCCCCTAAGAGCTGGTTCAAAGAGTTGACTCGTACTCAAATGACACATCACTAACGTGTCATGACCATGTGTGAGGTGGTGTATACCTGTGCAATACTGTATGCTGATCCACAGCAGATTTGTTGATCTGGTTCTTCTTTTATCTCAttagcttttttgttttctacctGATGATACATAATTGGCAAATCACATGACATATGATTTAACTGTTTTAGATGTGAGACAGACATCAGCATTTGTCATTTTCATGAGAAAGTAGAATCAAGAGGATAGCTATGACATGAAATAAGAGACTGTTACATGTGTCACATGTTGTGTTAACAGGCATATCTGATTGGTCCATCATGTGGACATGGGCgctacttcctgttttcctggCAGTGTTTGGCACTCTAGGCATTTGGACTGTGTTTGGTTTAGCTGTGTCTAATGAGACAGTGAATCTGACAGTCGAGTTCCCATACATCAGCACATGTGGCACGTATAACCCTCAGAGCTGTCTCTTCTCCCAGATATGCAACATCTGCTCTGTGCTAGctCTGTGGATTGTGATTATAAGGTTCCAGCAGGTGAGGGATTTGAATTGTTCGTCACGTGTTAACACAGCCAGTCTAGTTCTGGGGTTCATTTCATCTATAGGAATCTCCATCCTGGGAAACTTCCAGCAATCGGTGGTGATGGGAGCTCACTTGTTGGGTGCGTTCCTGGCATTTTTTGTGGGTCTGGCATACTTTTGGCTTCAGGTGTGGCTCACTTACCACGCAAAACCATCATATGACAAGAAGTGGGCAGGGCCTGCACGGATTATTTTCTGCAGTCTTTGCACTTGCTTGGTTCTTGTCATGACCGTGCTCCATAAAACAGGCTACCGATCTGCAGCTGCCATAAGTGAGTGGGCTTTGGTCATGTGCTTCTTCATGTTGTTCGGCATTTTCTCTGCAGAGTTCCGCCACATTGACTTCCATGAACTACACGTGCAGAACGAGGCGTTCAGCAAAAGTAGTCTTGAGTTTCCAACACAGACAAGTAATATGGTGGCACTGACTGGACACTTAACCAGCACACAAACACCCGCTGCCAAGTCTGACCCACAGTATGGATGAAACAAtgtataatattgtattgtatgggTTTATGCTGCTAATATGGACCTAATGTTATAGAATAAGAGAACTTTGGTCTTAGTGAATTTTCATGTTTTACTAAAgatgtataatttataaacCCAACCCATTCTTTCCAGCTTTGACTGATTTGTAAGTCTAGCTGCTCACATTTATTAACGACTTTGCTATCATTGATATGTTTATATCTtgttgaaataataaataaaaatacttgtCCTCATTGCCCAAGCATGTGCTGTGCTTAGCGCTGATGTCA
>XM_026917281.2
TTCTGATCCTTCCAGCAGCATGATGCAAAAAGACTCTCAGGACATTTCTGATTCCTCAGCGGACCAGTTTTGATGTGCTGTGCTCACTGGGGACAAACGTTCTTATTCTGCGCACTCAGAATCAGCACCCAACATGGTCATCAGCTCTTGTAGGAAACAAAGTCTGATGAGTAAAACATTCTTAGACATTCTGCACGCCAGTATAGAATTTGGCTATGATTtgccatgtttgttttcttgcaTGATCCTCACCATTCTCCTTTGTCTCCTCTGAGCTGCCGAATTTATACACACCTTAATCACATGACCTATGTCTTGATGAAAAGTACGATATATGCGATCAGGTGTGGAAGCTactgaataaactgtaaataaccATGAATGCCATATGCTTTTCCGTTGCAATACCCTATAGTGCAGGAGCATTGCAAATCTATTATATCCATTAGGTAAGGATAAAAGACAACTAGGCAtcataggaaattaatcaacaacagtaTGATGTGATATGAAGCACCATTTCTATTGttattccaaagtgttttattcctagtataccacagcaaattgccaacaaaatttattattaaagaatgacccCCTCATACTTTTTTgcccatttataattacatttaaagttatgAAACCTCAAAGAaatgttatttcctgttattgcttatattgtagcagctacaaacagttgttTTCTCGCCATCCATTATagtttcctctctcttgaagttaataagcaaaaaaatgcagcttattatATTtgagagaaaccacaaagactTCCTGCGCCAGACAACCAAACGGAACAGCCTtccttctgactgttacaaagcgctgacattgaagcctccttccaaaaatgctaaatgaacatctccttagagaaaacatctcaattacacacattttttaaaaaaccagTTTATGAGGAATGTCTGCCACATTAACAGTGATATGGTATAAATCACCATTAAACCCTGAGATATTACCAGAAGTTCACCTTTTGAGAACACGGACTGTTATGACACCTTTGCATACCAACAGAAAACCAACAAACACATTTTGAATAAATCGCAGGTCACCCACTCACCTATTAATGATATCTATgtagaaaatacaaaataccattaacaaatattacaaactaTTACAAAACAACCAGGAAGCAACTGAAATAcataatatgatatatatttttatcctaCTGTGTATGTTTCTGAGCCGCATGCTTTGATTAAGGCCATTTATCCCATGCGAGTGGATGTTAAAGGCCCACTGCAGATCCCTGGCCTGTCCCTCCTGACGCCAGAGCTGTTGGTATAAAAGGCATATCTGATTGGTCCATCATGTGGACATGGGCgctacttcctgttttcctggCAGTGTTTGGCACTCTAGGCATTTGGACTGTGTTTGGTTTAGCTGTGTCTAATGAGACAGTGAATCTGACAGTCGAGTTCCCATACATCAGCACATGTGGCACGTATAACCCTCAGAGCTGTCTCTTCTCCCAGATATGCAACATCTGCTCTGTGCTAGctCTGTGGATTGTGATTATAAGGTTCCAGCAGGTGAGGGATTTGAATTGTTCGTCACGTGTTAACACAGCCAGTCTAGTTCTGGGGTTCATTTCATCTATAGGAATCTCCATCCTGGGAAACTTCCAGCAATCGGTGGTGATGGGAGCTCACTTGTTGGGTGCGTTCCTGGCATTTTTTGTGGGTCTGGCATACTTTTGGCTTCAGGTGTGGCTCACTTACCACGCAAAACCATCATATGACAAGAAGTGGGCAGGGCCTGCACGGATTATTTTCTGCAGTCTTTGCACTTGCTTGGTTCTTGTCATGACCGTGCTCCATAAAACAGGCTACCGATCTGCAGCTGCCATAAGTGAGTGGGCTTTGGTCATGTGCTTCTTCATGTTGTTCGGCATTTTCTCTGCAGAGTTCCGCCACATTGACTTCCATGAACTACACGTGCAGAACGAGGCGTTCAGCAAAAGTAGTCTTGAGTTTCCAACACAGACAAGTAATATGGTGGCACTGACTGGACACTTAACCAGCACACAAACACCCGCTGCCAAGTCTGACCCACAGTATGGATGAAACAAtgtataatattgtattgtatgggTTTATGCTGCTAATATGGACCTAATGTTATAGAATAAGAGAACTTTGGTCTTAGTGAATTTTCATGTTTTACTAAAgatgtataatttataaacCCAACCCATTCTTTCCAGCTTTGACTGATTTGTAAGTCTAGCTGCTCACATTTATTAACGACTTTGCTATCATTGATATGTTTATATCTtgttgaaataataaataaaaatacttgtCCTCATTGCCCAAGCATGTGCTGTGCTTAGCGCTGATGTCA

Function

symbol description
tmem150b Predicted to be involved in autophagy. Is integral component of plasma membrane.

NR:

description
transmembrane protein 150B-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K21846 TMEM150; transmembrane protein 150

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917279.2 False 1731 mRNA 0.43 7 9373152 9378249
XM_026917280.2 True 4369 mRNA 0.38 6 9373152 9378249
XM_026917281.2 False 2397 mRNA 0.40 7 9373152 9379596

Neighbor

gene id symbol gene type direction distance location
pdgfbb LOC108260470 coding downstream 37522 9321259 ~ 9335630 (-)
pvalb6 pvalb6,LOC108258409,LOC108412390,LOC100701083,LOC103371237,LOC107690741,LOC101478422,LOC107602319 coding downstream 87212 9247782 ~ 9285940 (-)
cbx6b LOC108274693,LOC108260787 coding downstream 141904 9208211 ~ 9231248 (-)
trnav-cac_10 NA coding downstream 185560 9187520 ~ 9187592 (-)
mvp mvp,LOC107739398 coding downstream 188639 9168382 ~ 9184513 (-)
adsl adsl coding upstream 1078 9380674 ~ 9391360 (-)
LOC113528600 LOC108258913 coding upstream 22089 9401685 ~ 9412610 (-)
cbx1a LOC108279860,LOC108413138,LOC103037352 coding upstream 110752 9490348 ~ 9501580 (-)
hoxb1a hoxb1,LOC108274656 coding upstream 274847 9654443 ~ 9658406 (-)
hoxb2a hoxb2,LOC107687781 coding upstream 290013 9669609 ~ 9673077 (-)
G208189 NA non-coding downstream 270026 9102911 ~ 9103126 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding downstream 309645 9061580 ~ 9063507 (-)
G208153 NA non-coding downstream 342174 9030525 ~ 9030978 (-)
G208151 NA non-coding downstream 348169 9024761 ~ 9024983 (-)
G208145 NA non-coding downstream 365893 9007000 ~ 9007259 (-)
LOC117598997 NA non-coding upstream 62390 9441986 ~ 9446104 (-)
G208391 NA non-coding upstream 115027 9494623 ~ 9505750 (-)
G208473 NA non-coding upstream 366900 9746496 ~ 9748039 (-)
LOC117599011 NA non-coding upstream 450031 9829627 ~ 9927942 (-)
LOC113528446 NA non-coding upstream 457654 9837250 ~ 9838412 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 169512 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 230281 9112966 ~ 9142871 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 659834 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 1083344 8279767 ~ 8289808 (-)
prr15la LOC108273894,LOC108412372 other upstream 30208 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 84735 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 350255 9729851 ~ 9732566 (-)
tecpr1b LOC108276900 other upstream 1071128 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 2262561 11642157 ~ 11647997 (-)

Expression


Co-expression Network