kri1 (kri1)


Basic Information

Item Value
gene id kri1
gene name kri1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11753043 ~ 11763823 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917283.2
ttggttgattctgtTGCCCCTTGACCTGTGTGACGCAGAGGTCACGTGGCCGTTCTTCAGCCCAGTCTGACCATGCTTGTACTGAACAGTCCGTTTTAAAAAAGTTAGTGGTGTAAAATCTCCCGGTATTGCCTTTACACCAAGTGATCATGTCGGACCTAAAGATTAACAAAAAATTCGCGGAAAAATACGACAAGTATAGACAAAAGGAAGAGCTGCAGAAATTAAAGGATCGCTTTGGAGATCAGGATGACGAAGGTTCCTCAGGCTCCTCAGATTCAGAGTCTGATGAGAGTGAAGTGGAATTTGATCCCAAACTTGAGAGAGCTTTTTACTTGACTCTGTCTCTGTTGAAGAAGAAAGACCCAAAGATTTATCAGAAGGATGCACAGTTCTACACAGAGGAGGCGTCCAGCTCAGGCAGCGATGAGAAACCCTCCACTTCTAAAAAGTCTGTAAAGCCAATGTTCCTAAAGGACTACGAGCGCAAAGTCATCTTGGAGAGAGGAGGAAAatatgatgatgacgatgatagCGCTGATGAAGAGGCTGTCAGGAAGATGCAGGAGAGAGCTGCATCTCCCAGCTACATCCAAGAGCAGAAGGAACTAAAAGAGAGCTTTCGGCAGTTTGTTCAGGACAGCGGCGACGAGGCCAGTGATGAGGAAGCGCTGCTGAAACGCAGGAACAAAACACAAGAGGAGAAGGACAAAGAGGAGGCAGACTATGTGGAGTGGCTGAAAGGACAGAAAGAGTTGGAGGGAAAGGACGAGATTCAGGACATGAAATACCTGAGAGATTACTGGAACGACCCACAGCTGGATGATAAGGAGACTTTTTTACGAGACTACATCCTCAACAAAGGGTACCtggaggaagatgaggaggacAGaATTCCCACCTACAATGAGCTCATGCAGGAAGATGTAGAAGACTCTGACGAGGAAGGAGAATCGTTCCTGCAGAAGCAAGAGGACTTTGAGAGGCACTATAATTTCCGCTTTGAGGAGCCCGGCGCTCATCAGGTCAAGACGTACCCCCGCAGCATTGCCACCTCCGTCCGAAGCAAAGACgacaggagaaagaaaaagagggaagaggtgaaggagagaaagaaaaaaGAGAAAgaacagaagcagcagcagttAAAGGAGCTGAAGAACCTGAAGCGAGCAGAGATCATGGACAAGCTGAAAACATTGCAGGAGCTGACAGGAAACCAGGAGCTGGCCTTCAGCGAGGTGGACCTGGAAGGTGACTTTGACCCTCAGCACCACGACCAGCTCATGCAGaAATTTTTCGGAGATGAATACTACAAAGAGAACGATGAGGAGAAACCTCAGTTtgacgatgatgatgagttGGAAGgacATTGGAATTGGGACACATGGACAGGTGAAGACGAGGAAGGCtatgaagaggaggaagagtaTGAAGGTGAAGAGGAGAGCTACGAGCTTAACTGTGAAGATCCTGACTTCATTATGGATGCAGATTATGACCCCAATCAGCAGGCTCTgtctaagaagaaaaaaaagaaacagaaggagttgaagaagaaaaagagtgGAGATGATGCCCCGCTCATGGGCAAAAAGCGAAAGAAGTCTCACTTTGCTGAAATCGTCCAGCAAAACAAACCAGTGTTTGATCCACAGGAAAAGACGTTTGAACAGTACCTCGATGAATACTACAAACTAGACTATGAGGACATCATAGATGACCTGCCCTGCAGATTCCGCTACCGACAAGTCGTCCCTAATGACTTCGGCCTGACAACTGAAGAGATCCTGGGAGCAGATGAAAAAGAGTTGAATCACTGGTGCTCGCTGAAGAAGACCTGCATGTACAGGTCCGAGAGGCAAGAGCTCTGTGACGTGAAGAATTATCAAATCAAAGCGCAGAACATCAATAAGAAGAAACGAGTGTTGGCTTCTCTGTATGCTGAGAATGATGAGGAACTTGGGGAGTCGAACGCTAAGGTGAAAGTGGGTAAGAAGAGGAGAGATCGCATAAAGAAgacagagctggagagagaaagGATATCTGAGAAGAAGGCAGAAGAGGAACAAGCAGCAGAGTGCGATCAGGACGCATCAGCATCCAACTCAGCAGAGAATCTAGCAGCTCAGGCTCTCAGAGACACGGctgtggaggaggaggacgatACAGCGTTCCTGGTGCCTAAGAAAAAGATGAAAGTCGAAAAGACCACAGAACCCCAGAGGACTGAAAAGCCTAAATGGCCAAAGAAGAATAACCGCCGCCCAGGCGGACGAGTGCTTTCTGGTGCTTTGAAGGTGAAGATGGGAGGCCGGGAGTTCAGcagacagagactgagagccTACGGCCTGAATCCCAAGAGGCTGCATTTCAGGGAATTTTACcggcagaaaagaaaagagagagaacagaaagaaaagaaggaaaagctgaaaaacaaaGGGAAAGAGTAATACATCTTAGACTGTAACACGTGAACAATTTATTGTCTTGGATGCCATCAGGGGAGCACTTGCTTAAGTTAGGCAAGGAAGGATCACTGAATATCAATGTACAGGATTTTATAAGAAGCAAGGCTGTAAAGTTAGGATAGTGTCCATTAGCTGTGTGCCCCTtggtttaatatattaaaatcactttttttatgaaacaacttgtttcaattttcaatttgaTCATTAAACAATGGGCTTGAATATTGT

Function

symbol description
kri1 Acts upstream of or within definitive hemopoiesis and ribosome biogenesis. Predicted to be part of 90S preribosome. Predicted to be active in nucleolus. Is expressed in eye; immature eye; and somite. Orthologous to human KRI1 (KRI1 homolog).

NR:

description
PREDICTED: protein KRI1 homolog

GO: NA

KEGG:

id description
K14786 KRI1; protein KRI1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917283.2 True 2705 mRNA 0.46 19 11753043 11763823

Neighbor

gene id symbol gene type direction distance location
spc24 spc24 coding downstream 1619 11745491 ~ 11751424 (-)
LOC113528658 NA coding downstream 186915 11566010 ~ 11566128 (-)
LOC113528647 NA coding downstream 216365 11536560 ~ 11536678 (-)
slc16a5b LOC108274816 coding downstream 223601 11520766 ~ 11529442 (-)
LOC113528402 LOC108258929 coding downstream 234956 11509731 ~ 11518087 (-)
ldlra ldlr coding upstream 9256 11773079 ~ 11785047 (-)
smarca4a smarca4,smarca4a,LOC108278850,LOC107658703,LOC107758124 coding upstream 26752 11790575 ~ 11809016 (-)
il12rb2l NA coding upstream 46384 11810207 ~ 11825779 (-)
rln3a LOC108258150 coding upstream 62462 11826285 ~ 11828107 (-)
tmem104 tmem104,LOC107568246 coding upstream 199872 11963695 ~ 12012976 (-)
G209646 hmgxb4 non-coding downstream 87914 11664485 ~ 11665129 (-)
LOC113527962 NA non-coding downstream 126975 11619540 ~ 11626068 (-)
G209624 NA non-coding downstream 135855 11610634 ~ 11617188 (-)
G209618 NA non-coding downstream 151799 11600472 ~ 11601244 (-)
G209553 atp5h,LOC103042933,LOC101487002,LOC107599347 non-coding downstream 217346 11531576 ~ 11535697 (-)
LOC117598828 NA non-coding upstream 81750 11845573 ~ 11879417 (-)
G209829 NA non-coding upstream 304431 12068254 ~ 12068622 (-)
G209830 NA non-coding upstream 304990 12068813 ~ 12069180 (-)
G209832 NA non-coding upstream 306473 12070296 ~ 12070602 (-)
G209839 NA non-coding upstream 312849 12076672 ~ 12077073 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 51871 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 105046 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1282525 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 2020477 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2278565 9464331 ~ 9474478 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 533953 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 570031 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 782510 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 1626793 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 1631643 13395466 ~ 13399225 (-)

Expression


Co-expression Network