kcnj12b (LOC108274453,LOC108412542,LOC107690312,LOC107567496,LOC107731081,LOC107754252,LOC107567486)


Basic Information

Item Value
gene id kcnj12b
gene name LOC108274453,LOC108412542,LOC107690312,LOC107567496,LOC107731081,LOC107754252,LOC107567486
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7058969 ~ 7067348 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917287.2
GGGAATCACTGGTTGCACCGAAACACTGGAGAACACAAGGAGCCTCATCACAGCTTTACAGTGCATTAGTGGAAAACGAAATGAGCACAACACTAAAGGAACATTAAGGGAACATTTCCAGAGCTTTCAAGAGACTTCTCTGCACCACCTTCAGTGAAGACCCTGTGCTGCCGGCAGGTTTGTGCGGCACAcacagtgtatgtgtgcgtggTGCAGGTACTGTTAACAATGAGGACCTTGCAGGACTACGACAGGAGCCCCTTGAGTTTGGAGAAGTGGTTCTACTCAAAGAGGAACCCTTAAGGAACCGGGGAGTTAAATCATGCTTGGACTTGCctagaaagtgagaaagaaaacaagaaccTTTTAGTCCTTCTTTATAACCTGGACACATATACACTCAGCAGAAGGTCCTTGTGTCTTGTGCAGCGATTGGTGGAGAGACAGAGGCCTGGTATCCCAACCACTCATTGTCCTGACCGGGCCGAGTGGCATGAGTGTGGGAAAGACCCCTCGCTACAACGTTGTGTCATCGTCAGAGGAGGACATCCATCACCACGGCAACATGCCTGCCCTCGGCAATGGCTTTGGAAATGGTAAGATCCAGACGCGGCGAAAGCCACGCACCCGCTTTGTTAACAAAACCGGACAGTGTAACGTCAGCTTTTCACACATGGAAGAGCAATCACAGCGCTACTTGGCCGACATCTTCACAACATGTGTGGACATCCGTTGgcgctggatgttttttctcttctctcttgctTTCATTCTGTCCTGGCTGGCGTTCGGTTTCATCTTCTGGCTCATTGCCCTTGTACATGGTGACTTTGACAGAACCTCCAGTGAAGAGTTCACACCCTGCATCATGCAGGTCAACAGTTTTGTGGCAGCCTTCCTGTTCTCAGTCGAGACCCAGACCACAATTGGTTATGGCTTCAGGTGTGTGACTGAAGAGTGCCCACTGGCTGTATTTATGGTTGTTGTTCAGTCCATTTTGGGTTGCATCATTGACGCTTTCATGATTGGTGCCATCATGGCCAAAATGGCCCGACCCAAAAAGCGTGCACAGACATTGCTATTTTCGCACAATGCTGTCATAGCTATGCGTGATGGAAAGCTGTGCTTGATGTGGCGTGTAGGAAACTTGCGCAAAAGTCACATTGTCGAGGCCCACGTACGAGCACAGCTGATTAAGCCAAGAGTGACGGAAGAGGGCGAGTACATCCCACTTGACCAGATCGACATCAACGTTGGCTACGACAAAGGCATCGATCGCATCTTCCTTGTTTCTCCTCTGACCATCATCCACGAGATAAACGAGGAGAGCCCGCTCTTTGGAATCAGCAAACAGGACCTAGTCAATGAAGACTTTGAGATTGTGGTGATCCTCGAGGGCATGGTCGAGGCCACGGCAATGACAGCTCAGGTGCGCAGCTCTTACCTGGCCAACGAAATCTTATGGGGTCATCGCTTTGAGCCAGTAGTGTTTGAGGAGAAGAACCACTACAAGGTAGACTTTACGCACTTCCACAAGACTTATGAGGTGCCCTCCACACCACGCTGCAGTGCCAAAGACATTGAGGACCGCAAGTCACTGCTCTCCAGTGCTAACTTCTGTTACGAGAATGAGTTGGCATTCAgcagggaggaagaggaggaggaagatatAAGGGGAATTTTGGGGACTGAGATGGAAACCCTATCAGCCAGCCTGAACTCTGACCAGAGATCACACCATATAGAGTCCGAGATATGATCTCTGACACGACTGATCCTTGACATTCACCTCtagagaattttattttaatgtagatCCAGTCTGTCCCTTTAGTTTTGGCTTGAACTGACAGATACAAAGCAAAGCAAGTGCCACTATGAACCACTGCTGAATTAGTGCCATGGTGTAGTCAAGGGCAATTCATGTTCATGACTGTTGCTGGATGGCCTTCCAGTAGGAAAACTTGAAATAGGATTCCTTGTTTCATGCTGTAGTTTGAAGTGATAGCTTTAAGTGATATCATAATGCAATACCAAGCTATCCTGGGTGCCAAATTGGTTCAGACATCTGCTAGGTACTTTTGGTACCTTCTCTTGGTTTTGTAGAAT
>XM_026917288.2
AAGAGCAGGAGGTGTGGTTTAATCCTCACTCCCACAGAAGCTGACGGTTGTATGTGCCACTGCACTGAAGTAAGGTCCTTGTGTCTTGTGCAGCGATTGGTGGAGAGACAGAGGCCTGGTATCCCAACCACTCATTGTCCTGACCGGGCCGAGTGGCATGAGTGTGGGAAAGACCCCTCGCTACAACGTTGTGTCATCGTCAGAGGAGGACATCCATCACCACGGCAACATGCCTGCCCTCGGCAATGGCTTTGGAAATGGTAAGATCCAGACGCGGCGAAAGCCACGCACCCGCTTTGTTAACAAAACCGGACAGTGTAACGTCAGCTTTTCACACATGGAAGAGCAATCACAGCGCTACTTGGCCGACATCTTCACAACATGTGTGGACATCCGTTGgcgctggatgttttttctcttctctcttgctTTCATTCTGTCCTGGCTGGCGTTCGGTTTCATCTTCTGGCTCATTGCCCTTGTACATGGTGACTTTGACAGAACCTCCAGTGAAGAGTTCACACCCTGCATCATGCAGGTCAACAGTTTTGTGGCAGCCTTCCTGTTCTCAGTCGAGACCCAGACCACAATTGGTTATGGCTTCAGGTGTGTGACTGAAGAGTGCCCACTGGCTGTATTTATGGTTGTTGTTCAGTCCATTTTGGGTTGCATCATTGACGCTTTCATGATTGGTGCCATCATGGCCAAAATGGCCCGACCCAAAAAGCGTGCACAGACATTGCTATTTTCGCACAATGCTGTCATAGCTATGCGTGATGGAAAGCTGTGCTTGATGTGGCGTGTAGGAAACTTGCGCAAAAGTCACATTGTCGAGGCCCACGTACGAGCACAGCTGATTAAGCCAAGAGTGACGGAAGAGGGCGAGTACATCCCACTTGACCAGATCGACATCAACGTTGGCTACGACAAAGGCATCGATCGCATCTTCCTTGTTTCTCCTCTGACCATCATCCACGAGATAAACGAGGAGAGCCCGCTCTTTGGAATCAGCAAACAGGACCTAGTCAATGAAGACTTTGAGATTGTGGTGATCCTCGAGGGCATGGTCGAGGCCACGGCAATGACAGCTCAGGTGCGCAGCTCTTACCTGGCCAACGAAATCTTATGGGGTCATCGCTTTGAGCCAGTAGTGTTTGAGGAGAAGAACCACTACAAGGTAGACTTTACGCACTTCCACAAGACTTATGAGGTGCCCTCCACACCACGCTGCAGTGCCAAAGACATTGAGGACCGCAAGTCACTGCTCTCCAGTGCTAACTTCTGTTACGAGAATGAGTTGGCATTCAgcagggaggaagaggaggaggaagatatAAGGGGAATTTTGGGGACTGAGATGGAAACCCTATCAGCCAGCCTGAACTCTGACCAGAGATCACACCATATAGAGTCCGAGATATGATCTCTGACACGACTGATCCTTGACATTCACCTCtagagaattttattttaatgtagatCCAGTCTGTCCCTTTAGTTTTGGCTTGAACTGACAGATACAAAGCAAAGCAAGTGCCACTATGAACCACTGCTGAATTAGTGCCATGGTGTAGTCAAGGGCAATTCATGTTCATGACTGTTGCTGGATGGCCTTCCAGTAGGAAAACTTGAAATAGGATTCCTTGTTTCATGCTGTAGTTTGAAGTGATAGCTTTAAGTGATATCATAATGCAATACCAAGCTATCCTGGGTGCCAAATTGGTTCAGACATCTGCTAGGTACTTTTGGTACCTTCTCTTGGTTTTGTAGAAT
>XM_034309660.1
AGGTGTGGTTTAATCCTCACTCCCACAGAAGCTGACGGTTGTATGTGCCACTGCACTGAAGTCCTTGTGTCTTGTGCAGCGATTGGTGGAGAGACAGAGGCCTGGTATCCCAACCACTCATTGTCCTGACCGGGCCGAGTGGCATGAGTGTGGGAAAGACCCCTCGCTACAACGTTGTGTCATCGTCAGAGGAGGACATCCATCACCACGGCAACATGCCTGCCCTCGGCAATGGCTTTGGAAATGGTAAGATCCAGACGCGGCGAAAGCCACGCACCCGCTTTGTTAACAAAACCGGACAGTGTAACGTCAGCTTTTCACACATGGAAGAGCAATCACAGCGCTACTTGGCCGACATCTTCACAACATGTGTGGACATCCGTTGgcgctggatgttttttctcttctctcttgctTTCATTCTGTCCTGGCTGGCGTTCGGTTTCATCTTCTGGCTCATTGCCCTTGTACATGGTGACTTTGACAGAACCTCCAGTGAAGAGTTCACACCCTGCATCATGCAGGTCAACAGTTTTGTGGCAGCCTTCCTGTTCTCAGTCGAGACCCAGACCACAATTGGTTATGGCTTCAGGTGTGTGACTGAAGAGTGCCCACTGGCTGTATTTATGGTTGTTGTTCAGTCCATTTTGGGTTGCATCATTGACGCTTTCATGATTGGTGCCATCATGGCCAAAATGGCCCGACCCAAAAAGCGTGCACAGACATTGCTATTTTCGCACAATGCTGTCATAGCTATGCGTGATGGAAAGCTGTGCTTGATGTGGCGTGTAGGAAACTTGCGCAAAAGTCACATTGTCGAGGCCCACGTACGAGCACAGCTGATTAAGCCAAGAGTGACGGAAGAGGGCGAGTACATCCCACTTGACCAGATCGACATCAACGTTGGCTACGACAAAGGCATCGATCGCATCTTCCTTGTTTCTCCTCTGACCATCATCCACGAGATAAACGAGGAGAGCCCGCTCTTTGGAATCAGCAAACAGGACCTAGTCAATGAAGACTTTGAGATTGTGGTGATCCTCGAGGGCATGGTCGAGGCCACGGCAATGACAGCTCAGGTGCGCAGCTCTTACCTGGCCAACGAAATCTTATGGGGTCATCGCTTTGAGCCAGTAGTGTTTGAGGAGAAGAACCACTACAAGGTAGACTTTACGCACTTCCACAAGACTTATGAGGTGCCCTCCACACCACGCTGCAGTGCCAAAGACATTGAGGACCGCAAGTCACTGCTCTCCAGTGCTAACTTCTGTTACGAGAATGAGTTGGCATTCAgcagggaggaagaggaggaggaagatatAAGGGGAATTTTGGGGACTGAGATGGAAACCCTATCAGCCAGCCTGAACTCTGACCAGAGATCACACCATATAGAGTCCGAGATATGATCTCTGACACGACTGATCCTTGACATTCACCTCtagagaattttattttaatgtagatCCAGTCTGTCCCTTTAGTTTTGGCTTGAACTGACAGATACAAAGCAAAGCAAGTGCCACTATGAACCACTGCTGAATTAGTGCCATGGTGTAGTCAAGGGCAATTCATGTTCATGACTGTTGCTGGATGGCCTTCCAGTAGGAAAACTTGAAATAGGATTCCTTGTTTCATGCTGTAGTTTGAAGTGATAGCTTTAAGTGATATCATAATGCAATACCAAGCTATCCTGGGTGCCAAATTGGTTCAGACATCTGCTAGGTACTTTTGGTACCTTCTCTTGGTTTTGTAGAAT

Function

NR:

description
PREDICTED: ATP-sensitive inward rectifier potassium channel 12-like

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function

KEGG:

id description
K05005 KCNJ12_18, KIR2.2, KIR2.6; potassium inwardly-rectifying channel subfamily J member 12/18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917287.2 True 2109 mRNA 0.48 2 7058969 7067348
XM_026917288.2 False 1773 mRNA 0.49 2 7058969 7062434
XM_034309660.1 False 1759 mRNA 0.49 2 7058969 7062425

Neighbor

gene id symbol gene type direction distance location
slc6a16a LOC108260811,LOC107568576,LOC107690307,LOC108413965 coding downstream 56789 6980540 ~ 7002180 (-)
slc17a7a slc17a7a,LOC108260804,LOC108413988,LOC107731050,LOC107754185,LOC107653427,LOC101069507,LOC100693903 coding downstream 80836 6954113 ~ 6978133 (-)
zgc:55558 zgc:55558,p-ras,LOC108258948,LOC108413997,LOC107653435,LOC103023536,LOC107567516,LOC105894964,LOC103374945 coding downstream 114941 6937554 ~ 6944028 (-)
gys1 gys1,LOC108414029,LOC107653402,LOC107690304,LOC107731036 coding downstream 141974 6899007 ~ 6916995 (-)
tmem86b LOC108256452 coding downstream 168046 6888662 ~ 6890923 (-)
LOC113528017 NA coding upstream 67989 7135337 ~ 7146912 (-)
rpl19 rpl19,LOC108260855,LOC107084780,LOC108413899,LOC101075516,LOC107378566 coding upstream 150234 7217582 ~ 7225228 (-)
trnac-gca_16 NA coding upstream 203558 7270906 ~ 7270977 (-)
trnac-gca_17 NA coding upstream 204907 7272255 ~ 7272326 (-)
trnac-gca_19 NA coding upstream 205709 7273057 ~ 7273128 (-)
G206923 NA non-coding downstream 230823 6826368 ~ 6828146 (-)
G206924 NA non-coding downstream 233209 6824896 ~ 6825760 (-)
G206649 NA non-coding downstream 712606 6273816 ~ 6346363 (-)
G206628 NA non-coding downstream 854773 6203312 ~ 6204196 (-)
LOC113527891 NA non-coding downstream 869043 6187474 ~ 6189926 (-)
G207057 NA non-coding upstream 34900 7102248 ~ 7102389 (-)
G207198 NA non-coding upstream 109184 7176532 ~ 7176755 (-)
G207221 NA non-coding upstream 160037 7227385 ~ 7227664 (-)
G207226 NA non-coding upstream 170325 7237673 ~ 7237881 (-)
G207227 NA non-coding upstream 172893 7240241 ~ 7240907 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other downstream 332804 6646058 ~ 6726165 (-)
G206604 NA other downstream 863973 6126910 ~ 6194996 (-)
LOC113528542 NA other downstream 1097919 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 1107972 5940862 ~ 5950997 (-)
G206282 NA other downstream 1217492 5841137 ~ 5841477 (-)
G207231 spsb3 other upstream 251255 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 358369 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 492419 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 1182537 8249885 ~ 8267638 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other upstream 1212419 8279767 ~ 8289808 (-)

Expression


Co-expression Network