dhx58 (dhx58)


Basic Information

Item Value
gene id dhx58
gene name dhx58
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6461123 ~ 6467897 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917300.2
CTGAAAGATTGAAGAACCTAGAAGAAAACAAGCCACTGCTCTTCTTGCACCTTCTATTGTAGCAGGTTGCATTTACTCACAGCTTTTCCTCTTACTCCTGAATGtTTCGTTTCTTAGACTGAAAAGCTGACTTAGTGGCTCATTTAAAGAGCTGAGCAGATGATTCCTCttcacagcacaacacagttcGTCCACTAACAGCTCTGCGAAAAGATGGAGGAGATATCACTGAGGCCGTACCAGCAGGAGGTGGTCCAGGCGGCTCTGAGAAAGGAGAACAGTATCATCTGGCTGCCCACAGGTGGAGGAAAGACTCGTGCTGCTGTCTACGTGGCCAAGAGGCACCTAGAGACTCACCCCAATGCCAAAGTGGCCGTTCTTGTCAACAAGgtgcACCTGGTGGATCAGCACTTTCGGAAAGAGTTCCGGCCCTACCTCGGTAGCTCAGTGAAGATGACGCCGATCTGTGGGGACAGTAACGAGAAGGACTTTTTTGGCTGCGTGGTCAGGGACTCGAGCCTGGTCATCTGCACAGCTCAGATCTTGGAGAATGCCTTAATAAACACGGAGGAGAACAAGCATGTGGAGCTCACAGACTTCACACTGTTGATCATCGATGAGTGCCATCATACTCATAAGGAAGGGGTGTATAATAAAATCATGGCACGCTATGTGAAAAAGAAGATTGAAGGGGTGAGGGGTCTGCCTCAAATCCTGGGCCTTACAGCCTCACCGGGTACCGGAGGAGCCAAATCGCTGGAAGGCGCCATCGCACACGTGCTGGAGATCTGTGCAAACCTGGACTCTGTCATCGTGTCGACTAAAAATTATACAACAGAGCTTAAAGACGTCGTCCCCAGACCTATGAAGAACTATGACATTGTGGATGTGCGGTATTGGGACCCATTTGGTAATCatctgaagatgatgatgaagctgatTCACGAGTTCATGATGTTAGACCCAAAGTTCACTCTACGGGAGATGGGCACTCAGGAGTATGAAGCTGATGTGGTGGAACTGGaaaagaaagGTGTGCAGGAGGAGAACAGGTTGTTGACACGGTGTGCTCTGCACCTGCGGAAATTTAACGACGCTCTGCTCATTAACGAAACTGTGCGCATGGTGGACGCTCTGAGGCTTCTGGAGGAGTTCTACGCCACAGAAACAAGGAATGTGCTGGACGTCACAGATGAGTTCCTCACGGGACTCTTTAATGAGAACAGAGTGGAGCTGAGGCAGCTGGCATCCAATGCGTCAAATGAGAATCCCAAATTGGAACGGCTGCAGCGCACCCTGGTGGACCAGTTCCAAGACACGAACTCTCGTGGTATCATTTTTGCCAAAACCCGTGAGATCACACGCTGCCTGTACGACTGGGTGCGTACAAACCCTGAGCTGCAGCGTGCTGAGATCCGTGCTGCTAATCTGGTCGGAGCGGGAACTGGAGCCTCCCACATGACACAGttGGAGCAAAAATGTACTATTCAAAAATTTCGAGACGGACACCTCAACCTCCTCATCTCTACCAGTGTGGCTGAGGAAGGCCTCGACATTCCAGAATGCAATGTGGTGGTCCGCTACGGGCTTCTGACCAACGAGATCGCACAGCAGCAGGCTAGTGGGCGGGCCAGAGCCAAGAACAGCGTCTATTCAGTGGTGGCACAAGCAGATGGGCGGGAGATGCGCAGGGAGAAGACCAATGAATACCTGGAGGAGTTAACTTGCAGGGCGATTGCTCATGTGCAGAGCATGAAGCCCAGTGAATTTCACAGAAAGATCTTTGAGCTGCAGCAGGAGGCAGTGACAGCGCGCATCCTGGAGGCCAagaagagggagaggaggaggctCCGGTATGACGCGGCTGAGGTGGAGTTCGACTGCCGTGGCTGCTTCAGAGCCGTCGCCCGTGGAGATGACATGAGAATTGTGAACAGCTCGCAGCACGTCAACATCAATCCTGATTTTGAgAGGTTCTATAAGGTTGGAGGGCAGGTTTATCTGGAACGGACATTTGAAGATTGGGAACCAGGTCGTACCATCAGCTGTGCTGCATGTGGACAGGAATGGGGGATGGAGGTGAAGTTAAAGAAGGTGGTGTTGCCATGTCTAAAAATAAAGGGCTTTTCGATGAAGACTCCTCAGAGTAGCCGCACAGCCAAACAGTGGAAGGACGTAGAGTTCCAGGTGGAGGAGTTTGACTTTGTTCAGTATGTGCGAAAACGCTACCCTGACCTTGAGCTGGACTGAGGGTCTTTAGTCGTCCAGCTCGGTCTCTGAGGTAACGAGATTTATGCACACAGCTGTTACAGTAGTGTCGCTCTGTAAATCCTGAACACACTCCACCTCAATTTGATATAGACGGTCTTCATTTTGGCCATCAGGTGTCGCTGTAGTGCAATATTTCATTACAAGCTTTTCAAGCATCACATTCGCAATATGTTTTtctgtcccaaaccacatactacTGCACTAAATGGGATGCACATTATTATAGTTAGGATATTTAGTGTAGTAGTATGTGCTTTGAGACGCAGCTAGTGTCTCTGGGGAGCTAGTATGCTAATGCGCTTGAAGCTTGATTGCCTGATTAATTCTAATTCATGCTGataaatgtgcattaaaatgCTTGACATCATGAAAAGCTCATGGTTTGCGACCTTGCAGCGCTCACGAAGACTCATACACTGGCTAGTCCAGAATGACCTTTGACCCTTGCACTTTTGAAAGAGGTTGCTGTGGACCTCTTTGTGGACCTTGTCTGTTTTCATGTTGTTTTCTAATTATATATTTCATGAGCTTTTACTGTGAACAATGTGTGTACCAGAATAAAGAATTCACGATAATGA
>XM_026917301.2
CActccctctctttttcagtTTCGTTTCTTAGACTGAAAAGCTGACTTAGTGGCTCATTTAAAGAGCTGAGCAGATGATTCCTCttcacagcacaacacagttcGTCCACTAACAGCTCTGCGAAAAGATGGAGGAGATATCACTGAGGCCGTACCAGCAGGAGGTGGTCCAGGCGGCTCTGAGAAAGGAGAACAGTATCATCTGGCTGCCCACAGGTGGAGGAAAGACTCGTGCTGCTGTCTACGTGGCCAAGAGGCACCTAGAGACTCACCCCAATGCCAAAGTGGCCGTTCTTGTCAACAAGgtgcACCTGGTGGATCAGCACTTTCGGAAAGAGTTCCGGCCCTACCTCGGTAGCTCAGTGAAGATGACGCCGATCTGTGGGGACAGTAACGAGAAGGACTTTTTTGGCTGCGTGGTCAGGGACTCGAGCCTGGTCATCTGCACAGCTCAGATCTTGGAGAATGCCTTAATAAACACGGAGGAGAACAAGCATGTGGAGCTCACAGACTTCACACTGTTGATCATCGATGAGTGCCATCATACTCATAAGGAAGGGGTGTATAATAAAATCATGGCACGCTATGTGAAAAAGAAGATTGAAGGGGTGAGGGGTCTGCCTCAAATCCTGGGCCTTACAGCCTCACCGGGTACCGGAGGAGCCAAATCGCTGGAAGGCGCCATCGCACACGTGCTGGAGATCTGTGCAAACCTGGACTCTGTCATCGTGTCGACTAAAAATTATACAACAGAGCTTAAAGACGTCGTCCCCAGACCTATGAAGAACTATGACATTGTGGATGTGCGGTATTGGGACCCATTTGGTAATCatctgaagatgatgatgaagctgatTCACGAGTTCATGATGTTAGACCCAAAGTTCACTCTACGGGAGATGGGCACTCAGGAGTATGAAGCTGATGTGGTGGAACTGGaaaagaaagGTGTGCAGGAGGAGAACAGGTTGTTGACACGGTGTGCTCTGCACCTGCGGAAATTTAACGACGCTCTGCTCATTAACGAAACTGTGCGCATGGTGGACGCTCTGAGGCTTCTGGAGGAGTTCTACGCCACAGAAACAAGGAATGTGCTGGACGTCACAGATGAGTTCCTCACGGGACTCTTTAATGAGAACAGAGTGGAGCTGAGGCAGCTGGCATCCAATGCGTCAAATGAGAATCCCAAATTGGAACGGCTGCAGCGCACCCTGGTGGACCAGTTCCAAGACACGAACTCTCGTGGTATCATTTTTGCCAAAACCCGTGAGATCACACGCTGCCTGTACGACTGGGTGCGTACAAACCCTGAGCTGCAGCGTGCTGAGATCCGTGCTGCTAATCTGGTCGGAGCGGGAACTGGAGCCTCCCACATGACACAGttGGAGCAAAAATGTACTATTCAAAAATTTCGAGACGGACACCTCAACCTCCTCATCTCTACCAGTGTGGCTGAGGAAGGCCTCGACATTCCAGAATGCAATGTGGTGGTCCGCTACGGGCTTCTGACCAACGAGATCGCACAGCAGCAGGCTAGTGGGCGGGCCAGAGCCAAGAACAGCGTCTATTCAGTGGTGGCACAAGCAGATGGGCGGGAGATGCGCAGGGAGAAGACCAATGAATACCTGGAGGAGTTAACTTGCAGGGCGATTGCTCATGTGCAGAGCATGAAGCCCAGTGAATTTCACAGAAAGATCTTTGAGCTGCAGCAGGAGGCAGTGACAGCGCGCATCCTGGAGGCCAagaagagggagaggaggaggctCCGGTATGACGCGGCTGAGGTGGAGTTCGACTGCCGTGGCTGCTTCAGAGCCGTCGCCCGTGGAGATGACATGAGAATTGTGAACAGCTCGCAGCACGTCAACATCAATCCTGATTTTGAgAGGTTCTATAAGGTTGGAGGGCAGGTTTATCTGGAACGGACATTTGAAGATTGGGAACCAGGTCGTACCATCAGCTGTGCTGCATGTGGACAGGAATGGGGGATGGAGGTGAAGTTAAAGAAGGTGGTGTTGCCATGTCTAAAAATAAAGGGCTTTTCGATGAAGACTCCTCAGAGTAGCCGCACAGCCAAACAGTGGAAGGACGTAGAGTTCCAGGTGGAGGAGTTTGACTTTGTTCAGTATGTGCGAAAACGCTACCCTGACCTTGAGCTGGACTGAGGGTCTTTAGTCGTCCAGCTCGGTCTCTGAGGTAACGAGATTTATGCACACAGCTGTTACAGTAGTGTCGCTCTGTAAATCCTGAACACACTCCACCTCAATTTGATATAGACGGTCTTCATTTTGGCCATCAGGTGTCGCTGTAGTGCAATATTTCATTACAAGCTTTTCAAGCATCACATTCGCAATATGTTTTtctgtcccaaaccacatactacTGCACTAAATGGGATGCACATTATTATAGTTAGGATATTTAGTGTAGTAGTATGTGCTTTGAGACGCAGCTAGTGTCTCTGGGGAGCTAGTATGCTAATGCGCTTGAAGCTTGATTGCCTGATTAATTCTAATTCATGCTGataaatgtgcattaaaatgCTTGACATCATGAAAAGCTCATGGTTTGCGACCTTGCAGCGCTCACGAAGACTCATACACTGGCTAGTCCAGAATGACCTTTGACCCTTGCACTTTTGAAAGAGGTTGCTGTGGACCTCTTTGTGGACCTTGTCTGTTTTCATGTTGTTTTCTAATTATATATTTCATGAGCTTTTACTGTGAACAATGTGTGTACCAGAATAAAGAATTCACGATAATGA

Function

symbol description
dhx58 Predicted to enable double-stranded RNA binding activity; single-stranded RNA binding activity; and zinc ion binding activity. Predicted to be involved in innate immune response; positive regulation of interferon-beta production; and response to virus. Predicted to act upstream of or within defense response to virus. Predicted to be active in cytoplasm. Orthologous to human DHX58 (DExH-box helicase 58).

NR:

description
probable ATP-dependent RNA helicase DHX58 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K12649 DHX58, LGP2; ATP-dependent RNA helicase DHX58

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917300.2 True 2849 mRNA 0.49 13 6461123 6467897
XM_026917301.2 False 2764 mRNA 0.49 12 6461123 6467641

Neighbor

gene id symbol gene type direction distance location
znf385c znf385c coding downstream 17841 6350664 ~ 6443282 (-)
dnajc7 dnajc7,LOC107687006,LOC107690290,LOC107755572,LOC107729181 coding downstream 119892 6323202 ~ 6341231 (-)
ttc25 ttc25 coding downstream 137996 6315299 ~ 6323127 (-)
cnp cnp coding downstream 148315 6307670 ~ 6312808 (-)
aclya acly,aclya,LOC107729187,LOC107567706,LOC107755575 coding downstream 157642 6277216 ~ 6303481 (-)
kat2a kat2a,LOC107755568,LOC107729177,LOC107690294,LOC107687008 coding upstream 457 6468354 ~ 6481284 (-)
rab5c rab5c,LOC104958098 coding upstream 15774 6483671 ~ 6501470 (-)
kcnh4a kcnh4,LOC107568301 coding upstream 38807 6506704 ~ 6548501 (-)
hcrt hcrt coding upstream 82644 6550541 ~ 6555884 (-)
si:ch211-210g13.5 si:ch211-210g13.5,LOC108256246,LOC108441607,LOC107729192,LOC107687011,LOC103359488 coding upstream 89241 6557138 ~ 6632345 (-)
G206649 NA non-coding downstream 114760 6273816 ~ 6346363 (-)
G206628 NA non-coding downstream 256927 6203312 ~ 6204196 (-)
LOC113527891 NA non-coding downstream 271197 6187474 ~ 6189926 (-)
LOC113528476 NA non-coding downstream 507619 5952798 ~ 5953504 (-)
G206210 NA non-coding downstream 733443 5721634 ~ 5727680 (-)
G206924 NA non-coding upstream 356999 6824896 ~ 6825760 (-)
G206923 NA non-coding upstream 358471 6826368 ~ 6828146 (-)
G207057 NA non-coding upstream 634351 7102248 ~ 7102389 (-)
G207198 NA non-coding upstream 708635 7176532 ~ 7176755 (-)
G207221 NA non-coding upstream 759488 7227385 ~ 7227664 (-)
G206604 NA other downstream 266127 6126910 ~ 6194996 (-)
LOC113528542 NA other downstream 500073 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 510126 5940862 ~ 5950997 (-)
G206282 NA other downstream 619646 5841137 ~ 5841477 (-)
G206236 NA other downstream 704390 5754767 ~ 5756733 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other upstream 178161 6646058 ~ 6726165 (-)
G207231 spsb3 other upstream 850706 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 957820 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 1091870 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 1781988 8249885 ~ 8267638 (-)

Expression


Co-expression Network