mafga (mafga,LOC108277048,LOC107556599,LOC107739593,LOC107729585,LOC107701907,LOC106533856)


Basic Information

Item Value
gene id mafga
gene name mafga,LOC108277048,LOC107556599,LOC107739593,LOC107729585,LOC107701907,LOC106533856
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15523093 ~ 15534280 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917304.2
GATGTGAACGCTCTGTCTCCGTTAGCTGTGCGAGTCACTCCTTTAAATTAGCCGGGTGCGTATAGTCTTTCATGAATGAACCCACGTGACCAAACATATGACGTCTGGCGTCGGAACAAGAGAAAGGGAAATCAGCAAAGAGGGACAACAACCGCGCTCCcgcaggaaaataaataaataaataaataaaataaagacaacaAGACATCATATGCACGCGCTTGGCATCCCGAGCGGACCCggtgtctctcttttctccctaCAGCCGAGAGTCGGAATACTGGAGCATCTTTTCTGACGCGGGTGAGTCAAATCAAGCCGcacactgaagaagaagaagaagaagaagaagaagaagaagcgcATTGTTAAATGCTGAGTGTGCACGCGCGCTGGCGTCTGTTCCCAGCTGCCGCGCGCACTTTCCACCTGCTTCGCTAAATGTAGCTGATTCATCCCGAAACGAAGCGCTTCCGTTTAACGGAGCGACGGGATTTACGGAGCGGCTAGCAGTTGCGGGAGGTTGTGGGGGATTCCCTTTATCCATTCGTTCAGCacgagcgagcgagcgagcggGCGGGAGGCGGCGAAGTGCATCTGGTCTGGAAGTGAAATCACGAGCGTGTGTAGTGACAGCTAGGGGGCTCGTGGTCGAGAAAAATGTGTAACCGGATCGGCGCGTTAGTTTGCTAGCTCATGCACACGCGCAGCACACGAGCGCTGCTGTTTCATCAAATCCAATCGACGCTCCTGTTTTGAAAGAGCGCCATCAGACAGTCTTCCAGGATAGTCAAGCGTGGCTCTCGTGGCATGACTACTACAAGTAAGGGAAACAAAGCCCTGAAGGTGAAGCGGGAGCCAGGTGAGAATGGCACGAGCCTTACGGACGATGAGCTAGTGTCGATGTCAGTGCGAGAGCTGAACCAACACCTGCGCGGCCTATCCAAGGAGGAGATTGCACAACTAAAGCAGCGGCGGCGCACGCTAAAGAACCGTGGCTATGCCGCCAGCTGTCGCGTCAAGCGCGTCACGCAGAAGGAAGAACTGGAGAAGCAGAAAGCTGAGCTGCAGCAAGAGGTGGAGAAACTCGCTTCCGAGAACGCCAGCATGAAGGTAGAGCTAGACGTGCTGCGTTCCAAGTATGAGGCGCTGCAAAGCTTCGCCAGGACTGTGGCACGCAGCCCTGTACCAGCTGCCAGGGGCGCAATCACGCCAATCATCGTACCAGGCAAGGTGGCCGCCACGAGTGTCATCACCATCGTCAAGTCCAAAACGGAGGCACGCTCGTAATGCACAATGCCTTTGGTCAGTGAATCATTATCAAGCACAGATCTGCAACATCTGCTTTAAACAATACAGCAGTTAAATATGCTCTGCCTAGCAGTGTGCTTATTAAGATGGCATGTATGGTGAGTTTTGGTTGTTAACCTCCATTAAGGCCTTTCTGGTTTTGcataactgtgtttttttt
>XM_026917305.2
GATGTGAACGCTCTGTCTCCGTTAGCTGTGCGAGTCACTCCTTTAAATTAGCCGGGTGCGTATAGTCTTTCATGAATGAACCCACGTGACCAAACATATGACGTCTGGCGTCGGAACAAGAGAAAGGGAAATCAGCAAAGAGGGACAACAACCGCGCTCCcgcaggaaaataaataaataaataaataaaataaagacaacaAGACATCATATGCACGCGCTTGGCATCCCGAGCGGACCCggtgtctctcttttctccctaCAGCCGAGAGTCGGAATACTGGAGCATCTTTTCTGACGCGGACAGTCTTCCAGGATAGTCAAGCGTGGCTCTCGTGGCATGACTACTACAAGTAAGGGAAACAAAGCCCTGAAGGTGAAGCGGGAGCCAGGTGAGAATGGCACGAGCCTTACGGACGATGAGCTAGTGTCGATGTCAGTGCGAGAGCTGAACCAACACCTGCGCGGCCTATCCAAGGAGGAGATTGCACAACTAAAGCAGCGGCGGCGCACGCTAAAGAACCGTGGCTATGCCGCCAGCTGTCGCGTCAAGCGCGTCACGCAGAAGGAAGAACTGGAGAAGCAGAAAGCTGAGCTGCAGCAAGAGGTGGAGAAACTCGCTTCCGAGAACGCCAGCATGAAGGTAGAGCTAGACGTGCTGCGTTCCAAGTATGAGGCGCTGCAAAGCTTCGCCAGGACTGTGGCACGCAGCCCTGTACCAGCTGCCAGGGGCGCAATCACGCCAATCATCGTACCAGGCAAGGTGGCCGCCACGAGTGTCATCACCATCGTCAAGTCCAAAACGGAGGCACGCTCGTAATGCACAATGCCTTTGGTCAGTGAATCATTATCAAGCACAGATCTGCAACATCTGCTTTAAACAATACAGCAGTTAAATATGCTCTGCCTAGCAGTGTGCTTATTAAGATGGCATGTATGGTGAGTTTTGGTTGTTAACCTCCATTAAGGCCTTTCTGGTTTTGcataactgtgtttttttt

Function

symbol description
mafga Enables protein heterodimerization activity. Contributes to DNA binding activity and DNA-binding transcription factor activity. Acts upstream of or within positive regulation of transcription, DNA-templated. Part of transcription regulator complex. Is expressed in brain and ventricular zone. Orthologous to human MAFG (MAF bZIP transcription factor G).

NR:

description
transcription factor MafG isoform X2

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K09037 MAFF_G_K; transcription factor MAFF/G/K

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917304.2 True 1471 mRNA 0.52 3 15523093 15534280
XM_026917305.2 False 1001 mRNA 0.51 3 15523093 15534280

Neighbor

gene id symbol gene type direction distance location
samd9l LOC108278244 coding upstream 2526 15509927 ~ 15520567 (+)
LOC113528209 ern1,LOC107555087 coding upstream 21668 15472866 ~ 15501425 (+)
tex2 LOC108278257,LOC108437163 coding upstream 53687 15437391 ~ 15469406 (+)
axin2 LOC108255292,LOC108437161 coding upstream 150910 15343257 ~ 15372183 (+)
cep112 cep112 coding upstream 180146 15208106 ~ 15342947 (+)
LOC113527870 pcyt2,LOC108277112,LOC108437168,LOC107701914,LOC105013038 coding downstream 14224 15548504 ~ 15566563 (+)
rnf213a rnf213 coding downstream 83003 15617283 ~ 15663689 (+)
trnar-ucu_8 NA coding downstream 278962 15813242 ~ 15813331 (+)
LOC113528350 LOC108259890 coding downstream 288502 15822782 ~ 15826921 (+)
LOC113528274 rab26,LOC105905286,LOC102798624,LOC100707100,LOC101484267,LOC106579017 coding downstream 866474 16400754 ~ 16494702 (+)
G211543 NA non-coding upstream 34111 15486537 ~ 15488982 (+)
G211540 NA non-coding upstream 51389 15469549 ~ 15471704 (+)
LOC117598819 NA non-coding upstream 318435 15203522 ~ 15204658 (+)
G211338 NA non-coding upstream 512442 15010142 ~ 15010651 (+)
G211287 NA non-coding upstream 622787 14899776 ~ 14900306 (+)
G211838 NA non-coding downstream 171469 15705749 ~ 15706001 (+)
G211856 NA non-coding downstream 305492 15839772 ~ 15840000 (+)
G212033 NA non-coding downstream 612099 16146379 ~ 16148542 (+)
G212029 NA non-coding downstream 617975 16152255 ~ 16153553 (+)
G212030 NA non-coding downstream 619336 16153616 ~ 16154250 (+)
LOC117598752 NA other upstream 531643 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 901305 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 2029151 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 2077407 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 3148721 12367566 ~ 12374372 (+)
G211913 NA other downstream 383937 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 606050 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 1553004 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 2164393 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 2649413 18183693 ~ 18342960 (+)

Expression


Co-expression Network