LOC113540583


Basic Information

Item Value
gene id LOC113540583
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21541990 ~ 21546092 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937154.2
CATCACTCATGAACAAGATCTCTAgctggtagagagagagaacaagaggaCTGTTCTGTGGATGAAATGAGGATACAGGTCATCTTTGGGATCCTGTGGATGTTCATAGGAGGTGCCACAGGTTTGCTGTTTCACGATCCTGTTGTCTGTAGATTTACAGAGACTAATCAGTGTTATGTAGCTCTGGGACAACGATTGCACCTGCAAATGGTTGAGGAGGATGTGTTTTACCTAATACTGAGCAGCAATACATCTAccaatcatttcattttaaagtatACAAAAACCAAGCTTGACCAACCAAAACCAAATTCCCCAAGATGGCAGTTtgttaatgataataaaactaTGATACTAAGCAGTGCAGAGCGGAATGACTCTGGAACATACCTTTTAGCCATCAATGATGCAGACGggaatattaaaaaacattataaactcCAGCTGAACATTGAAGCTGAGGTGTCCTCAGTGAAAGTGTCATACAGCTGCTTGTCCCATGGGATCAGGAAAGTGTACTGTTCTGCTGATGGAGACAACCTCCGCTTCCACGGGACTTCTGATTTAAACCTAGTTTCTCAACTAGAGGATGGGATCAGCACTTTCCTGCTGGAACAAAGCCATGGAAATGTCACCTGCTACGTAGAAAATCATGTCAGTAGCGAACAAAATTCCACTGAACTCCACCCATGTCTCATGACCAGCTTCACACAGTCTAATACTGGTTTCATGGTGTTCTTGTCTGTGTGGCTCTTTGAAGTCATCATCCTACTGTCGCTGTTAGTGGGAGCATTTTATATCTACACCAGAATCTACAGGAAACAGAGAATAACTGATAGAAATGATGAGGAAGCTCTATAAACCTGGATTAGGAACAGAAGAAGCAGTTCATGGTTTCTTTCCTCTATGCCAGTCATCATTACTCTCCATCTCATTCAGACCATAATAACAGACAGTTTACAAAGAACACAAATTCTTTTAAACCACATTTGGGTTTTGCTCGTTCAAAACTAAAACAGCCTTATGATTCCTGCAGATTCATTGGCCTTGTTTCTGtcaaagtttatttttaatattctaaaaCAATGCACTGATTTAATGCTGTTGTTACAATCACACCAACAATGCTTtgtggaaattattttaaaatatgtaatatatgtcaGATTTGAAAAAGAACGTGTTGCATTTTTTACCTGAAACAATCATGGACCAGTTAACTgtgtcttaataataataataataattaacattaggGCCAGGTACAAAGAATAATCTAAAGTGCAGGGATTGGTGAGAGCACAGACAACAATCCACCCAGCTGACAAAGTAGTATAGGCATTTGCCTGAGCATTTGGTGTACAAGAGGGTCAGGGCCTTTTCAATACAAATACCTGGCTCTTGAAGTACAGCTGAGACAAGATTGAGTAGAGGAacataaaaggaaaaagagatcCAGGAAACACGGATTTAGGTTTTGTTGActacattttgattttattttttttttgtgaatccaacTGTCCTTTTACCTGTAACATTGCATGTAGGGTTTGAGTGTACACCGGTCAGAGCAGGAAAGGTCTTCTTTCATTGTGGGAGACAGATCATTCAGAATAAGAAGCTGAGAAGGAGGGCCAAGATGCTGTGAATGAGGGCTGCACTTAAAAACAGATGGGATGAAAGTGGATTTGTATGAAGACAGATATTGAGGAACACCTACTGAACATTTTTCTCTTCTATTGCTGAAAGAATCACCTATGACATCTATGTAAACATGATTGTTAATCAACAAAAGCCTGGAAGACAAAAAAGGGCGTTAACTAAACCATAAGGCATAACTAGATATTCACATTGAGCGTTATATTAAAAATAGACACATTATAAATGTGTGATGTAATAAAAACCATGGCTTTAAGGCTCTAAGCACTAAGATCAGTGGGAATTTCATTGTGAGAGAATTTAGACCCAGTAATATAAGTCAGGGCAGATTCTGGGGAAGTGAACCCAAGTTATAGGGCTTCTTTTATGTACTCCTCCTTATGTAGACATGATCATACATGGCATGTAAAAGTCATTCAAATTGTGAAATCTATGACAGGACAAATTCTGCAGAAATGAACATGCTGATATACCTAACTTTTAGAGCCAATCACAAACTAATGAGCACTAGGCTACCGACGTTCCCTCCTGTGGTGCCCTTTATACCGTTTTTTTTGGTTATGGTAGAtttttttggctggatactttTTAATTTACCAAAattaaaatggag
>XM_034309850.1
CATCACTCATGAACAAGATCTCTAgctggtagagagagagaacaagaggaCTGTTCTGTGGATGAAATGAGGATACAGGTCATCTTTGGGATCCTGTGGATGTTCATAGGAGGTGCCACAGATTTACAGAGACTAATCAGTGTTATGTAGCTCTGGGACAACGATTGCACCTGCAAATGGTTGAGGAGGATGTGTTTTACCTAATACTGAGCAGCAATACATCTAccaatcatttcattttaaagtatACAAAAACCAAGCTTGACCAACCAAAACCAAATTCCCCAAGATGGCAGTTtgttaatgataataaaactaTGATACTAAGCAGTGCAGAGCGGAATGACTCTGGAACATACCTTTTAGCCATCAATGATGCAGACGggaatattaaaaaacattataaactcCAGCTGAACATTGAAGCTGAGGTGTCCTCAGTGAAAGTGTCATACAGCTGCTTGTCCCATGGGATCAGGAAAGTGTACTGTTCTGCTGATGGAGACAACCTCCGCTTCCACGGGACTTCTGATTTAAACCTAGTTTCTCAACTAGAGGATGGGATCAGCACTTTCCTGCTGGAACAAAGCCATGGAAATGTCACCTGCTACGTAGAAAATCATGTCAGTAGCGAACAAAATTCCACTGAACTCCACCCATGTCTCATGACCAGCTTCACACAGTCTAATACTGGTTTCATGGTGTTCTTGTCTGTGTGGCTCTTTGAAGTCATCATCCTACTGTCGCTGTTAGTGGGAGCATTTTATATCTACACCAGAATCTACAGGAAACAGAGAATAACTGATAGAAATGATGAGGAAGCTCTATAAACCTGGATTAGGAACAGAAGAAGCAGTTCATGGTTTCTTTCCTCTATGCCAGTCATCATTACTCTCCATCTCATTCAGACCATAATAACAGACAGTTTACAAAGAACACAAATTCTTTTAAACCACATTTGGGTTTTGCTCGTTCAAAACTAAAACAGCCTTATGATTCCTGCAGATTCATTGGCCTTGTTTCTGtcaaagtttatttttaatattctaaaaCAATGCACTGATTTAATGCTGTTGTTACAATCACACCAACAATGCTTtgtggaaattattttaaaatatgtaatatatgtcaGATTTGAAAAAGAACGTGTTGCATTTTTTACCTGAAACAATCATGGACCAGTTAACTgtgtcttaataataataataataattaacattaggGCCAGGTACAAAGAATAATCTAAAGTGCAGGGATTGGTGAGAGCACAGACAACAATCCACCCAGCTGACAAAGTAGTATAGGCATTTGCCTGAGCATTTGGTGTACAAGAGGGTCAGGGCCTTTTCAATACAAATACCTGGCTCTTGAAGTACAGCTGAGACAAGATTGAGTAGAGGAacataaaaggaaaaagagatcCAGGAAACACGGATTTAGGTTTTGTTGActacattttgattttattttttttttgtgaatccaacTGTCCTTTTACCTGTAACATTGCATGTAGGGTTTGAGTGTACACCGGTCAGAGCAGGAAAGGTCTTCTTTCATTGTGGGAGACAGATCATTCAGAATAAGAAGCTGAGAAGGAGGGCCAAGATGCTGTGAATGAGGGCTGCACTTAAAAACAGATGGGATGAAAGTGGATTTGTATGAAGACAGATATTGAGGAACACCTACTGAACATTTTTCTCTTCTATTGCTGAAAGAATCACCTATGACATCTATGTAAACATGATTGTTAATCAACAAAAGCCTGGAAGACAAAAAAGGGCGTTAACTAAACCATAAGGCATAACTAGATATTCACATTGAGCGTTATATTAAAAATAGACACATTATAAATGTGTGATGTAATAAAAACCATGGCTTTAAGGCTCTAAGCACTAAGATCAGTGGGAATTTCATTGTGAGAGAATTTAGACCCAGTAATATAAGTCAGGGCAGATTCTGGGGAAGTGAACCCAAGTTATAGGGCTTCTTTTATGTACTCCTCCTTATGTAGACATGATCATACATGGCATGTAAAAGTCATTCAAATTGTGAAATCTATGACAGGACAAATTCTGCAGAAATGAACATGCTGATATACCTAACTTTTAGAGCCAATCACAAACTAATGAGCACTAGGCTACCGACGTTCCCTCCTGTGGTGCCCTTTATACCGTTTTTTTTGGTTATGGTAGAtttttttggctggatactttTTAATTTACCAAAattaaaatggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937154.2 True 2275 mRNA 0.38 6 21541990 21546092
XM_034309850.1 False 2244 mRNA 0.38 6 21541990 21546092

Neighbor

gene id symbol gene type direction distance location
LOC117598820 LOC108280985,LOC108277545 coding upstream 61548 21454118 ~ 21480442 (+)
LOC117598821 NA coding upstream 111532 21405340 ~ 21430458 (+)
LOC113527856 NA coding upstream 139266 21390903 ~ 21402724 (+)
LOC113527892 NA coding upstream 154903 21381780 ~ 21387087 (+)
sec24b sec24b,LOC108434542,LOC107596339,LOC107731363 coding upstream 213236 21301643 ~ 21328754 (+)
rest rest coding downstream 74539 21620631 ~ 21631906 (+)
LOC117598747 NA coding downstream 99760 21645852 ~ 21646623 (+)
LOC117598748 NA coding downstream 101144 21647236 ~ 21647803 (+)
LOC117598992 NA coding downstream 112410 21658502 ~ 21659107 (+)
LOC117599000 NA coding downstream 114333 21660425 ~ 21661039 (+)
LOC117598827 LOC108280967,LOC108277545,LOC108277574 non-coding upstream 36204 21502137 ~ 21505786 (+)
G214807 NA non-coding upstream 67027 21474633 ~ 21474963 (+)
G214804 NA non-coding upstream 75264 21447993 ~ 21466726 (+)
G214800 NA non-coding upstream 77361 21406373 ~ 21464629 (+)
G214802 NA non-coding upstream 93586 21426974 ~ 21448404 (+)
G214747 LOC108280967 non-coding downstream 5457 21551549 ~ 21556401 (+)
G214825 NA non-coding downstream 71003 21617095 ~ 21617294 (+)
G214829 NA non-coding downstream 88759 21634851 ~ 21635074 (+)
G215042 NA non-coding downstream 110169 21656261 ~ 21656835 (+)
G215055 NA non-coding downstream 171600 21717692 ~ 21718076 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other upstream 28950 21482022 ~ 21513040 (+)
hopx hopx other upstream 192904 21340416 ~ 21349086 (+)
nudt6 nudt6 other upstream 517903 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 1368638 20022509 ~ 20173352 (+)
G214015 lyar other upstream 1560610 19978314 ~ 19981380 (+)
G215015 LOC108275153 other downstream 99988 21646080 ~ 21649152 (+)
G215022 NA other downstream 116992 21663084 ~ 22000809 (+)
G215010 LOC108275153 other downstream 118466 21664558 ~ 21711769 (+)
G215008 LOC108275153 other downstream 165102 21711194 ~ 21721059 (+)
LOC117598918 LOC108275153 other downstream 165223 21711315 ~ 21711778 (+)

Expression


Co-expression Network