pdlim7 (pdlim7)


Basic Information

Item Value
gene id pdlim7
gene name pdlim7
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22781366 ~ 22825233 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947025.2
CGCGGCCATTTCACATCAAGGTGCGCGCATCACTGGTCACGTGACCGCTGACGCGGCTGCCCGAGTCCTGCTGAAAATCCAGGAGGGAGCGCGCGAGCGGCTGCAGCTGCGCGCGGAGGCGAGCTCACACCTCGACAGCAGAGCTACTGAAAGTTTTCACTGTTTACTATCTGCTAAAGCTTTCCTGTGCTCGATAAATAAACACCATTTCACCATGTCTGGAGACACTAAAGGCACACAGGCGgccatgAACGTTTACAGCGTGACGCTCAGCGGGCCGGCGCCGTGGGGTTTCCGACTCCAGGGAGGGAAGGATTTCAGCATGCCTCTCACAGTGTCCAGGctgactCCTGGAGGAAAGGCAGCTCAGGCCGGAGTCGGCGTGGGAGACAGTGTGGTGTCCATTGGAGACTCCAACGCTGAGGAGATGACACACGTTGAGGCACAAAACAAGATAAGAGCAGCAACTGACTCCCTCAGTCTGACACtcagcagAGCTTTCCAGTCTCAAGGTGAACAGAAGGCATCGCTTGCTACTGCACCCACTCAGCCTAAGTACTCCTTCACGCCCAGCACGACCATAAACAAGATGGCGCGGCCTTTCTCTGCCTCTGCTAATAAATCCAGCACAGGGCCCGTCATCAAACCGGTGGCGTACGCTCCCAAGCTTAACACCAACGCATCTAACGCCAGCACGCCAGTGTCAGGCAGCATGCCCCCCTCTCAGAACGGCCATGGAGTGACTCCGTGCCCCAGCAAACCTGCAGCAAAGCCCGAAGGAGCTCGAGCTCCAGCTCATAAATCTTCCACCACGTCCGGACCTTCGAGCCGCCCGCCTTGGGTGATGGACCCGAATTTTGCCGAACGCTATCGGCCGGATAAGACGAGCACGGTGGTGACGCAGCACAGGCAGCCGGCGCAGCCCACACCCGAGCAGAACCGCAGCTCCATCCTCCAGGCTGCGCAGCAGAACCCGGAGTCCGACTCCGGACGCACGCCGCTCTGCGCCGCATGCAACAAGATCATAAGaggtCGCTATGTGGTGGCTCTGGGCCGCTCCTGGCACCCGGAGGAGTTCACGTGCTGTCAGTGCCGAGCCGTGCTCGACGAAGGCGGCTTCTTTGAGGAACAAGGCTCCGTTTATTGCACCAAATGCTACGACAATCGTTACGCCCCCAACTGCGCCAAGTGCAAGAAGAAGATCGCTGGAGAGATCATGCATGCCCTGAAGATGACCTACCACGTCCAGTGCTTTGTGTGTGCCGCCTGCAGGAGGCCCATCAGAAACCAGGCCTTCTACATGGAAGAGGGCGAGCCTTACTGCGAGAGAGACTATGAAAAGATGTTTGGTACTAAATGTCATGGCTGTGACTTTAAGATCGATGCCGGCGACCGCTTCCTGGAAGCTCTAGGCTACAGCTGGCACGACACGTGCTTCGTCTGTGCGCTTTGCCATGTCAACCTGGAGGGCAAGACGTTCTACTCGAAGAAGGATAAGCCTTTGTGTAAAGGTCACGCCTTCTCTCCACTTTGAGGAGCCGAGATCCAGCGCTCCAGTGGAACACACAACATGGAGAGAATCCTATGGCAAGGGTTATGATGGCTCAGAATTTCTGTGTAGTAATGGACTGAAGTTTTGGAATACTGACTTCTGATGTgtagtaaaaaacaaaacaaaaaaaaaccccttttttaaatatctggtAATAATAAGACTGCCGAGAGAAAACCACGAGGTGCTTTTCAATGGTCTTGatcttattgtttttaaataaataaatagtaggAAATGATGTACGTGGGTTTTCTCCCGACAGAGATGATTAGGCCAGTTCTGAGCTGTGTAGCCAGgaaatgtcagccattttgctTTGGCAGGTAAAGCCTTCACCATCCCTGCCAGTACAGGTTAGCATTTCATCCCTGTCAGTATTTATTTAGGAAACAGGCCACTTTTTTCCACACAGGTAATGATTAATCTTGAGATAAACAGGGATGCAGGATCCTTATTGATATTGAATAGTTACTGGATATAGATGCAAATTACAGGTCTTGATAATGCTAAATATGAATAGGTAAAGCCATCTTCTGTCTCATGTTGCCAGTATGTGCTTATACATGCATGCCTACCACACttcactgtttttctctttcagattgCTTTAATTTCACCCCCcccttgttgttttttttttttaacatacacGGGCACTCTCTAGTCAATCATGCAATATCTAAATCGCAGATGAACTACACAAGTACGTTATTCGTCCGAGAACGCGTACTACCTGGTCAAATTAGGTCTGGAATACACTTATCGCATGTATAGAAATATTAGCCCTAGGTGTGACATCATCCTAACGCTACGTCAGTGTAGCCCTGCACGTCCCCAGACAACCCGCAGTCCTCTATCCCCATGTGCCGTGGTACTTAAAGTAATGGCAAACCCGCCGAGGAAGAAAAATGAGCCTCTGGCAGCCGAACAGCACTGCATTAGCGCTGATTGCGAGAGGTTCATATTGACCTGAGCGACGATCTTTACGTGCTTCCCATACCGAGCATGCCACGACTGTCTGCTCTAATCTGACAGGTACCTCTAATTAACAAAAGGCTTAGGGCCTGCGTGAGCCAAGCTCGTTTTCTGAGCATGAATTTACATGTTTTAACCAAAAGGCTCCTGCTGATCAAAGAAACAGATCAACACGATATTGCCCCTGTCAAAGAGTATGTGGTGCTGCCATGATCATATGAGTTTGGTCATTACTCACAATCTTTTAACATCAGCATCTCTTGGTGAAGCCAGATCCTGCTAACACGTGACTGTTTTAGTGTGCAGGCTAGTCATTAGTGTCATCGCTGTGGTGCTCTGTCTCAGTCCTAGAGGCCTCCCCTTGGCTCTGGCACCTGATTCGACTAATTACAAGGTCATTAAAGGAAATCTGCAGCATTTTTCAATTTAATCTCCAtccactgcatctgtagtgtgtgatgatcacagacaagaatttcaacactGTTCCCTATGCAGAGAAAACAATTCCACCATTAAACAATGGAAAATATGCAACTATACATCAAGTATTACAACCATTACACTCTAATAATAAAGATCTTCGGGTTAAGACAtacatggaggaggaggagcatcacagatattttgtcagccagtatctgattacaaactatTAGCTAAGCTTGGCTCCTTATTCAACATGATCTTTACAGAAAGATAGCCCAAGCGAGGtgagaaagtaaatacaaaATCATTAAAGATGAGAtatcaaatgtatattttagacagaaaaaatatttggcAAAAATCTGATACTTGTGTTTTCTCATAGGTTTTCCAAAACcattacacatatatacaaaaaaatacatctttaaATTGCGTGTCTTGACAAAAGCAGAAGTCTAATTCCATTATAAATGAATTTGGTCATTTTGTGTATAGGGAAATATTACAAATTTTGTCTGATGTACTACAGATGCACTAGATGGagattaggtttaaaaaaaatgattgtaaaAAGCGTTCGCCCAAACTGGCTGGTGGGCGGGAAATGGCATGTGACCAAATTCTAGAGAAGATGTACAAGAACCTGCCTTCTGATATCACTAAAGCAGTCTCGGCCTTTAATATTGGACAGTGCCACTTCCTGTATATCCCACTTCttatatattcttttattaGACAGTACCTTCATTTTGGGAAGCACTTCTGTTCTTTAAACCTGTCGTGGTTACTGCGGGTCTGTTACTCTTCGTCTCTGCGGATTATCGAGTGCTTCTCTTACTCTAACACATCACCTAAATGAGCTGTTTGGGCTCATTACAAGCTCTTAATGAGTCGGCTGATGTGTAATTGCAGAATGGGTTTAGTGCAGAGAATGTAGAAGCCAGGCTAAATTCCTCTACCTACACGTGACATTAGACTATTAGACTATTAGACAATCCAA
>XM_026947026.2
tgcgtgACTCATGTGGGTGTTGGGCTGAAATAGTTTGGTGTAGTTTTACATTCCTTATATAGCCCGTGGAGAGGGGACGAGACGTAAAGCCTCACCCCCGACACAAGGCCGAAGAGTCGGAGGGTCGCACTCGTTTCCAGAACCAGCGTTCCTCGTACTTTTCTTGGCTTTCCAGTGGCTGATTTGGCCCTTTCTGCGAGgccatgAACGTTTACAGCGTGACGCTCAGCGGGCCGGCGCCGTGGGGTTTCCGACTCCAGGGAGGGAAGGATTTCAGCATGCCTCTCACAGTGTCCAGGctgactCCTGGAGGAAAGGCAGCTCAGGCCGGAGTCGGCGTGGGAGACAGTGTGGTGTCCATTGGAGACTCCAACGCTGAGGAGATGACACACGTTGAGGCACAAAACAAGATAAGAGCAGCAACTGACTCCCTCAGTCTGACACtcagcagAGCTTTCCAGTCTCAAGGTGAACAGAAGGCATCGCTTGCTACTGCACCCACTCAGCCTAAGTACTCCTTCACGCCCAGCACGACCATAAACAAGATGGCGCGGCCTTTCTCTGCCTCTGCTAATAAATCCAGCACAGGGCCCGTCATCAAACCGGTGGCGTACGCTCCCAAGCTTAACACCAACGCATCTAACGCCAGCACGCCAGTGTCAGGCAGCATGCCCCCCTCTCAGAACGGCCATGGAGTGACTCCGTGCCCCAGCAAACCTGCAGCAAAGCCCGAAGGAGCTCGAGCTCCAGCTCATAAATCTTCCACCACGTCCGGACCTTCGAGCCGCCCGCCTTGGGTGATGGACCCGAATTTTGCCGAACGCTATCGGCCGGATAAGACGAGCACGGTGGTGACGCAGCACAGGCAGCCGGCGCAGCCCACACCCGAGCAGAACCGCAGCTCCATCCTCCAGGCTGCGCAGCAGAACCCGGAGTCCGACTCCGGACGCACGCCGCTCTGCGCCGCATGCAACAAGATCATAAGaggtCGCTATGTGGTGGCTCTGGGCCGCTCCTGGCACCCGGAGGAGTTCACGTGCTGTCAGTGCCGAGCCGTGCTCGACGAAGGCGGCTTCTTTGAGGAACAAGGCTCCGTTTATTGCACCAAATGCTACGACAATCGTTACGCCCCCAACTGCGCCAAGTGCAAGAAGAAGATCGCTGGAGAGATCATGCATGCCCTGAAGATGACCTACCACGTCCAGTGCTTTGTGTGTGCCGCCTGCAGGAGGCCCATCAGAAACCAGGCCTTCTACATGGAAGAGGGCGAGCCTTACTGCGAGAGAGACTATGAAAAGATGTTTGGTACTAAATGTCATGGCTGTGACTTTAAGATCGATGCCGGCGACCGCTTCCTGGAAGCTCTAGGCTACAGCTGGCACGACACGTGCTTCGTCTGTGCGCTTTGCCATGTCAACCTGGAGGGCAAGACGTTCTACTCGAAGAAGGATAAGCCTTTGTGTAAAGGTCACGCCTTCTCTCCACTTTGAGGAGCCGAGATCCAGCGCTCCAGTGGAACACACAACATGGAGAGAATCCTATGGCAAGGGTTATGATGGCTCAGAATTTCTGTGTAGTAATGGACTGAAGTTTTGGAATACTGACTTCTGATGTgtagtaaaaaacaaaacaaaaaaaaaccccttttttaaatatctggtAATAATAAGACTGCCGAGAGAAAACCACGAGGTGCTTTTCAATGGTCTTGatcttattgtttttaaataaataaatagtaggAAATGATGTACGTGGGTTTTCTCCCGACAGAGATGATTAGGCCAGTTCTGAGCTGTGTAGCCAGgaaatgtcagccattttgctTTGGCAGGTAAAGCCTTCACCATCCCTGCCAGTACAGGTTAGCATTTCATCCCTGTCAGTATTTATTTAGGAAACAGGCCACTTTTTTCCACACAGGTAATGATTAATCTTGAGATAAACAGGGATGCAGGATCCTTATTGATATTGAATAGTTACTGGATATAGATGCAAATTACAGGTCTTGATAATGCTAAATATGAATAGGTAAAGCCATCTTCTGTCTCATGTTGCCAGTATGTGCTTATACATGCATGCCTACCACACttcactgtttttctctttcagattgCTTTAATTTCACCCCCcccttgttgttttttttttttaacatacacGGGCACTCTCTAGTCAATCATGCAATATCTAAATCGCAGATGAACTACACAAGTACGTTATTCGTCCGAGAACGCGTACTACCTGGTCAAATTAGGTCTGGAATACACTTATCGCATGTATAGAAATATTAGCCCTAGGTGTGACATCATCCTAACGCTACGTCAGTGTAGCCCTGCACGTCCCCAGACAACCCGCAGTCCTCTATCCCCATGTGCCGTGGTACTTAAAGTAATGGCAAACCCGCCGAGGAAGAAAAATGAGCCTCTGGCAGCCGAACAGCACTGCATTAGCGCTGATTGCGAGAGGTTCATATTGACCTGAGCGACGATCTTTACGTGCTTCCCATACCGAGCATGCCACGACTGTCTGCTCTAATCTGACAGGTACCTCTAATTAACAAAAGGCTTAGGGCCTGCGTGAGCCAAGCTCGTTTTCTGAGCATGAATTTACATGTTTTAACCAAAAGGCTCCTGCTGATCAAAGAAACAGATCAACACGATATTGCCCCTGTCAAAGAGTATGTGGTGCTGCCATGATCATATGAGTTTGGTCATTACTCACAATCTTTTAACATCAGCATCTCTTGGTGAAGCCAGATCCTGCTAACACGTGACTGTTTTAGTGTGCAGGCTAGTCATTAGTGTCATCGCTGTGGTGCTCTGTCTCAGTCCTAGAGGCCTCCCCTTGGCTCTGGCACCTGATTCGACTAATTACAAGGTCATTAAAGGAAATCTGCAGCATTTTTCAATTTAATCTCCAtccactgcatctgtagtgtgtgatgatcacagacaagaatttcaacactGTTCCCTATGCAGAGAAAACAATTCCACCATTAAACAATGGAAAATATGCAACTATACATCAAGTATTACAACCATTACACTCTAATAATAAAGATCTTCGGGTTAAGACAtacatggaggaggaggagcatcacagatattttgtcagccagtatctgattacaaactatTAGCTAAGCTTGGCTCCTTATTCAACATGATCTTTACAGAAAGATAGCCCAAGCGAGGtgagaaagtaaatacaaaATCATTAAAGATGAGAtatcaaatgtatattttagacagaaaaaatatttggcAAAAATCTGATACTTGTGTTTTCTCATAGGTTTTCCAAAACcattacacatatatacaaaaaaatacatctttaaATTGCGTGTCTTGACAAAAGCAGAAGTCTAATTCCATTATAAATGAATTTGGTCATTTTGTGTATAGGGAAATATTACAAATTTTGTCTGATGTACTACAGATGCACTAGATGGagattaggtttaaaaaaaatgattgtaaaAAGCGTTCGCCCAAACTGGCTGGTGGGCGGGAAATGGCATGTGACCAAATTCTAGAGAAGATGTACAAGAACCTGCCTTCTGATATCACTAAAGCAGTCTCGGCCTTTAATATTGGACAGTGCCACTTCCTGTATATCCCACTTCttatatattcttttattaGACAGTACCTTCATTTTGGGAAGCACTTCTGTTCTTTAAACCTGTCGTGGTTACTGCGGGTCTGTTACTCTTCGTCTCTGCGGATTATCGAGTGCTTCTCTTACTCTAACACATCACCTAAATGAGCTGTTTGGGCTCATTACAAGCTCTTAATGAGTCGGCTGATGTGTAATTGCAGAATGGGTTTAGTGCAGAGAATGTAGAAGCCAGGCTAAATTCCTCTACCTACACGTGACATTAGACTATTAGACTATTAGACAATCCAA

Function

symbol description
pdlim7 Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Acts upstream of or within heart development; pectoral fin development; and somitogenesis. Located in actin cytoskeleton and perinuclear region of cytoplasm. Part of filamentous actin. Is expressed in several structures, including cardiovascular system; digestive system; lateral plate mesoderm; musculature system; and nervous system. Orthologous to human PDLIM7 (PDZ and LIM domain 7).

NR:

description
PREDICTED: PDZ and LIM domain protein 7-like isoform X1

GO: NA

KEGG:

id description
K19867 PDLIM5_6_7; PDZ and LIM domain protein 5/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947025.2 True 3962 mRNA 0.47 11 22781366 22825233
XM_026947026.2 False 3918 mRNA 0.47 11 22786206 22825233

Neighbor

gene id symbol gene type direction distance location
rnf44 rnf44 coding upstream 26934 22733735 ~ 22754432 (+)
cckb LOC108274239 coding upstream 159386 22614859 ~ 22621980 (+)
LOC113546929 NA coding upstream 232500 22537502 ~ 22548866 (+)
LOC117598775 NA coding upstream 1112484 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 1115622 21664594 ~ 21665744 (+)
LOC113546949 LOC108277208 coding downstream 316481 23141714 ~ 23143760 (+)
LOC113546924 NA coding downstream 321964 23147197 ~ 23156708 (+)
LOC113546950 NA coding downstream 335230 23160463 ~ 23163243 (+)
LOC113546948 LOC108277208 coding downstream 343111 23168344 ~ 23170849 (+)
atoh1b LOC108277232 coding downstream 458015 23283248 ~ 23285620 (+)
G215343 NA non-coding upstream 2125 22778616 ~ 22779241 (+)
G215336 NA non-coding upstream 45380 22735771 ~ 22735986 (+)
G215294 NA non-coding upstream 54720 22724687 ~ 22726646 (+)
LOC117598850 NA non-coding upstream 245590 22495208 ~ 22535776 (+)
LOC117595678 NA non-coding upstream 279996 22500883 ~ 22501370 (+)
G215295 NA non-coding downstream 1788 22827021 ~ 22830832 (+)
G215350 NA non-coding downstream 16111 22841344 ~ 22909078 (+)
G215360 unc5a,LOC107750348 non-coding downstream 29012 22854245 ~ 22857421 (+)
G215425 unc5a,LOC107677380,LOC107595741 non-coding downstream 104255 22929488 ~ 22929797 (+)
G215476 NA non-coding downstream 201210 23026443 ~ 23027619 (+)
trnat-cgu_7 NA other upstream 790 22780286 ~ 22780576 (+)
higd2a higd2a other upstream 11730 22765814 ~ 22769636 (+)
LOC113546930 LOC108275153 other upstream 290455 22463100 ~ 22490911 (+)
LOC113546936 NA other upstream 310688 22470179 ~ 22470678 (+)
LOC117598940 NA other upstream 383796 22397112 ~ 22397570 (+)
G215347 NA other downstream 10431 22835664 ~ 22835902 (+)
G215621 LOC108277208 other downstream 312013 23137246 ~ 23170553 (+)
LOC113546919 LOC108278588 other downstream 906221 23731454 ~ 23741390 (+)
igfbp7 igfbp7 other downstream 917249 23742482 ~ 23748131 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other downstream 1069014 23894247 ~ 23920403 (+)

Expression


Co-expression Network