LOC113546927 (ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753)


Basic Information

Item Value
gene id LOC113546927
gene name ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22661560 ~ 22676748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947051.2
GagcagtgcgcatgcgcagtgcgaCTCGGGCAGGGGCGACAGAGACGGGACGCCATTTTGAGGCTCCAGTTTCCAGCTAACATAGCAGCGAGCCGCAGCGGAGAGGaggcacagaaaaaaaaagaaaacatatatatttttaccgGGCGGTCTTGCTGTTTTCATTCCAGTTTTGGATACTGAGAACGTTGCTCTCGCGTCGcttaaagaagaaagaaaaggggaaaaaacggGTTATCCGTTTTTTTTGTATCAGATTTGGAAGTAGTTCGGACTGACGGCTCGGCATCACGATGGCTACCCAGTCTGATCTGATGGAGCTGGACATGGCGATGGAGCAGGACCGGAAGGCTGCAGTGAGCCACTGGCAGCAGCAGTCCTACCTGGACTCAGGTATCCACTCTGGAGCCACCACCACGGCACCCTCACTCTCCGGCAAGGGGAACCCGGAGGACGAGGAGCTGGACAACCAGGTGCTGTATGAGTGGGAGCAGGGATTCAGTCAGCCCTTTACACCGGAGCAGGTGGCAGACATGGACGGGCAGTACGCCATGACCCGTGCCCAGCGTGTGCGTGCCGCCATGTTCCCCGAGACCCTGGATGAGGGCATGCAGATCCCCACCACCCAGTTTGACTCCGCTAACCCCACCAACGTGCAGCGGCTGGCTGAGCCGTCCCAGATGCTCAAACATGCCGTGGTGAACCTCATCAACTACCAGGATGACGCTGAACTTGCCACAAGGGCTATTCCAGAGCTCACCAAGCTCCTCAACGACGAAGACCAGgtggtggtgaaTAAGGCATCCGTCATGGTGCATCAGCTGTCGAAGAAGGAGGCGTCGCGGCACGCCATCATGCGCTCCCCTCAGATGGTGTCGGCCATCGTGAGGACCATGCAGAACACGGCCGACGTGGAGACGGCACGCTGCACCGCCGGCACACTGCACAACCTCTCCCACCACCGGGAGGGCCTTCTCGCCATTTTCAAATCCGGCGGCATCCCTGCTCTCGTCAAGATGCTTGGatccCCAGTGGACAGCGTGCTGTTCTACGCCATCACAACCCTGCACAACCTCCTCCTGCACCAGGAAGGAGCTAAAATGGCCGTCCGTCTGGCCGGTGGCCTGCAGAAGATGGTCGCCCTGCTAAACAAGACCAACGTTAAATTCCTGGCCATCACCACAGACTGCCTACAGATCCTGGCTTACGGCAACCAGGAGAGCAAGTTGATCATCTTGGCTAGTGGCGGCCCTCAGGCTCTGGTGAACATCATGAGGACCTACACGTACGAGAAGCTGCTGTGGACCACCAGCCGTGTGCTCAAAGTTCTCTCCGTTTGCTCCAGTAACAAACCTGCCATCGTGGAGGCTGGAGGCATGCAGGCTCTTGGCCTTCACCTGACCGACCCCAGTCAGCGACTGGTACAGAACTGCCTCTGGACCCTCAGAAACCTGTCAGATGCTGCCACcaagcagGAGGGGATGGAAGGCCTGCTCGGCACCCTGGTCCAGCTGCTCGGCTCGGACGACATCAACGTGGTGACGTGCGCCGCCGGCATCCTGTCCAACCTTACCTGCAACAACTACAAGAACAAAATGATGGTGTGCCAGGTCGGTGGCATCGAGTCGCTCGTGCGCACCGTGCTTAGAGCTGGAGACCGCGAGGACATCACCGAGCCGGCCGTGTGCGCTCTCCGCCATCTCACCTCCAGACACCAAGATGCTGAAATGGCCCAGAATGCTGTGCGCCTTCACTACGGCCTTCCTGTGGTGGTCAAACTGCTGCACCCGCCCTCACACTGGCCTCTTATTAAGGCCACGGTTGGTCTGATCCGTAACCTGGCGCTATGTCCAGCCAATCACGCGCCACTGCGCGAGCAGGGTGCCATCCCCCGATTAGTCCAGCTGCTCGTGAGGGCACACCAGGACACCCAGAGACGCACCTCCATGGGAGGCACACAGCAACAGTTTGTGGAAGGAGTTCGAATGGAGGAGATCGTAGAGGGCTGCACTGGCGCGCTCCACATCCTGGCCAGAGATGTGCACAACAGAATTGTTATCCGAGGACTCAACACCATCCCTCTGTTTGTTCAGTTGCTGTACTCTCCGATCGAAAACATCCAGCGTGTGGCGGCCGGTGTGCTGTGCGAACTGGCACAGGACAAGGAAGCGGCCGAGGCCATCGAAGCAGAGGGAGCCACGGCGCCCCTCACTGAACTGCTGCACTCCAGGAACGAGggagtggctACGTATGCGGCAGCTGTGCTGTTCCGCATGTCTGAGGACAAACCTCAGGACTACAAGAAGCGGCTGTCTGTGGAGCTGACCAGCTCTCTCTTCAGAACAGAGCCCATGGCCTGGAACGAGACTGGTGATATGGGTCTGGATATAGGAGCTCAAGGAGAGCCTGTTGGATACAGACCAGACGACCCAAGCTACCGCTCCTTCCACTCGGGCTATGCCCAGGACGGCCTGGGCATGGATGGCATGCTGGAACATGAGCTCGCTGGCCACCATCCCGGAGCAGAGTACCCAGTGGAGGGGCTTCCTGACCTCGGCCACAGCCACGACCTGATGGACGGCCTTCCTCCCACAGACTCCAATCAGCTGGCCTGGTTCGACACGGACCTCtaaacacattctcacacacacacagtgtctgcaAGTAGAGAAGTTGTATTGCGTGAATGAATCTGCATTGTGATTTTTGCCTAAGGAGTCACGGAAGGGTTGCGGCGGGTGCGCGAGCATATCGGAAAGTGCCtgacaatgcacacacacacagacacacacacaaacactgcacacacacacacatacacacaatgtacATGTACACACCTGTTGGAGACGAGAGGGAGTTTTCTACGAGGAACAAGAGGAAGGGAAGCCAACCCcccttttttgttgttattattctggactttattttttccacttgGCCACGACGGAGGAAGGAAAGTCGAGAGGGATTTTGGGAGCGGGTGCTCTTTTAAGAGTGGAGATGGAAGATCTAAAGATGGAACTGTAAACCTTTTtagctttgtttttatttcactttccttttttaacttttttttttttttttttaaagatcagtCTATGGTACTGACCTCCTAGCTTGATTTTGACCTAGTATGTAttcattaattgttttttttttttttttccccacttttttGTTTCAGCAGTAATTTGTATTTCCTTTTTATGTCTTCTGTAGTGTTGAGTTGTAGTGGACTTGCCTCGTTTTGGTTTCTCAAATCTTTCTCACGTAAACGGTGTCGAACACTAATAATCGGTTTCTATGTAATCTGACTGAAAGTGTAACGATgtgtagcttttttttataCGATCAGCTGTTAAACCTTGGAGTATTGGGGTGGGAGAAATATATGCAttcttattaaagaaaaaaaaggtatgcCCAGAGAGGCGCTTTTCAGTGTCACAGTTGTTCCAAATAAGGTGTGGGGTGAAATATGGAGAGTAGGGGAGAAGAGGGGGCACGGGCTTGACAAagatcttttcttttctatgcTATCTCGAGGTAGTCTCTCTATTGAAGCGACGTCGTTGTTTTTGTTTGCCTGTGCGGCTTCTTTTGGGAACATGGATAATGACATAGCTAAACAATAAAAGACTTTTATTCCA

Function

symbol description
ctnnb1 Enables cadherin binding activity. Involved in positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification. Acts upstream of or within several processes, including determination of dorsal/ventral asymmetry; ectoderm development; and glomerular filtration. Located in several cellular components, including intercalated disc; microvillus; and zonula adherens. Part of catenin complex. Is expressed in several structures, including EVL; adaxial cell; brain; germ ring; and gonad. Human ortholog(s) of this gene implicated in several diseases, including autosomal dominant non-syndromic intellectual disability 19; exudative vitreoretinopathy 7; hepatocellular carcinoma (multiple); reproductive organ cancer (multiple); and urinary system cancer (multiple). Orthologous to human CTNNB1 (catenin beta 1).

GO: NA

KEGG:

id description
K02105 CTNNB1; catenin beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947051.2 True 3653 mRNA 0.53 16 22661560 22676748

Neighbor

gene id symbol gene type direction distance location
trak1b LOC108275079,LOC108414239,LOC107706145 coding downstream 17297 22629881 ~ 22644263 (-)
topaz1 topaz1 coding downstream 79458 22552724 ~ 22582102 (-)
LOC117598896 NA coding downstream 967926 21693183 ~ 21693634 (-)
LOC117598776 NA coding downstream 969984 21685697 ~ 21691576 (-)
LOC117598954 NA coding downstream 976915 21684024 ~ 21684645 (-)
LOC113546904 LOC108258503 coding upstream 1416 22678164 ~ 22696823 (-)
cdhr2 NA coding upstream 29806 22706554 ~ 22729853 (-)
faf2 faf2,LOC107594931 coding upstream 79233 22755981 ~ 22763871 (-)
unc5a unc5a,LOC107677380 coding upstream 150196 22826944 ~ 23035173 (-)
dok3 dok3 coding upstream 608960 23285708 ~ 23297814 (-)
G215262 NA non-coding downstream 117580 22446122 ~ 22543980 (-)
G215269 NA non-coding downstream 153697 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding downstream 180638 22477976 ~ 22480922 (-)
G215249 NA non-coding downstream 263809 22390356 ~ 22397751 (-)
G215228 NA non-coding downstream 464148 22164570 ~ 22197412 (-)
G215507 NA non-coding upstream 56981 22733729 ~ 22734095 (-)
G215509 NA non-coding upstream 60528 22737276 ~ 22737479 (-)
G215494 NA non-coding upstream 77812 22754560 ~ 22755107 (-)
G215489 NA non-coding upstream 104575 22781323 ~ 22815252 (-)
G215493 NA non-coding upstream 111468 22788216 ~ 22797514 (-)
LOC117598969 NA other downstream 241650 22399685 ~ 22419910 (-)
LOC117598814 NA other downstream 297295 22326726 ~ 22364265 (-)
LOC117598975 NA other downstream 339827 22321174 ~ 22321733 (-)
LOC117598862 NA other downstream 341285 22319544 ~ 22320275 (-)
LOC113546926 NA other downstream 347689 22312787 ~ 22313871 (-)
cltb cltb,LOC107750349,LOC107677378 other upstream 92889 22769637 ~ 22779068 (-)
G215624 LOC108277208 other upstream 458171 23134919 ~ 23156666 (-)
fam193b fam193b,LOC107579325 other upstream 636138 23312886 ~ 23327942 (-)
LOC113546965 dgkq,LOC107595737,LOC107749781,LOC107587098 other upstream 679405 23356153 ~ 23389259 (-)
usp7 usp7 other upstream 1864024 24540772 ~ 24588450 (-)

Expression


Co-expression Network