LOC113546948 (LOC108277208)


Basic Information

Item Value
gene id LOC113546948
gene name LOC108277208
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23168344 ~ 23170849 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947057.2
TTCAGTCTTATCCATAAGCTTGCATCCTTCACAAAGAGCCATTTCTTTAAAGAAGGCACTTCTTGCTAACTGCTTCTGACTCCTTCCTTGTTAAGAGCAAAATCATGTCATACCTGgcagatgttgttgttgttggtgggaACGGAGGAGGACCTTTTGATTTTAATGGCACTGAAAATGGAACCATGTTGAAAAAGATCTGGGTGTGGGTCGGTAACTGGACAGTGAAAGCCATGAAGGTTTGGCTTACTGATGGCCAGTCCAGGCAGTTTGGTGAACCTGATGGGAATTTTACAGAGTTTATATTTGAAGATGGGGAGCATTTCACCTCCCTTTCACTTTGGGCAAATGGAAATGGAACACGTCTGGGTGCCATCAAATTCAAGACAAATCACTCCCGGGAGTTCTTTGCACGATTGACAGGATGGGTGCTGCAACCAGAAGTTCCAGTTGATGTTGCTTCTGGGATCTGCATGGGAATCAAAGGACATTCAGGTTCAGATATTGATTGCTTAGGCTTCATGTTCATTAACACCATCAAGTCTACTGAGCTTACAAATGTTGAGTATCCCACACTTCATGATGTGATACCCAAAGTGGCTGTTGCAGAAATCAAATCCATGACCTACCAGAATAACACTACTGAAACGCAAGAATATACAATTGAAACCTCCAAAAAAATCACCCAAACATCCTCCTGGTCTGTTACCGGCAGACTGGAATTCATGGTCAGCCTGGAAGTGAAGGCAGGAATTCCACTAATTGCAGAAGGCACAACAAgatatgaattaaaaattggAGTTGAGAGTACATATGCTTCGGAGACCACTGAAGAGAAGATGGAGCTCTTCtcgtttcctgttaaagtccctCCAGGTACAACCGTGGATGTGGACATCACAACTGGCCAGGCTACAATTGATCTTCCCTTCAATGGCATAGTCAAGATTACCTGCTATAATGGCAGTGTGCTGCAGTTTAATACCAGTGGGACCTACAAGGGTGTCACTTACACTGATGGAAAAGTAGTTGTGAATGAATCAGCCAAAATGCTTGATGGGGCCTTACAGGCTTTGAACTAAATTGTAAAAATGGTTCTAAAAGTTCAGTATAATGAATCTCATATATTAGATCATTCAAACTGAGAATGTGTTTGATGCTAGCTTGGTTTaaatgatttgattttattattagcttttcATAATCATAATGATTCTCTTGTCTGattgtcttttttattatcTGTAAACCTTTTAAAACAGTGACTTGATTTATCCTGCTAGGCTTCCAGCGGTGCAGACCCAcattttttgattaaaaaaacattctttaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947057.2 True 1335 mRNA 0.41 2 23168344 23170849

Neighbor

gene id symbol gene type direction distance location
LOC113546950 NA coding upstream 5101 23160463 ~ 23163243 (+)
LOC113546924 NA coding upstream 11636 23147197 ~ 23156708 (+)
LOC113546949 LOC108277208 coding upstream 24584 23141714 ~ 23143760 (+)
pdlim7 pdlim7 coding upstream 343111 22781366 ~ 22825233 (+)
rnf44 rnf44 coding upstream 413912 22733735 ~ 22754432 (+)
atoh1b LOC108277232 coding downstream 112399 23283248 ~ 23285620 (+)
LOC113546963 slc39a8 coding downstream 172112 23342961 ~ 23355343 (+)
LOC113546983 LOC108277145,LOC108432419,LOC103366337,LOC107082714,LOC107697613,LOC105918713 coding downstream 286954 23457803 ~ 23554508 (+)
cpxm1b LOC108274665,LOC105911438,LOC102297474,LOC102196974,LOC102797758 coding downstream 541670 23712519 ~ 23730112 (+)
noa1 noa1 coding downstream 596725 23767574 ~ 23772974 (+)
G215479 NA non-coding upstream 132685 23035455 ~ 23035659 (+)
G215476 NA non-coding upstream 140725 23026443 ~ 23027619 (+)
G215425 unc5a,LOC107677380,LOC107595741 non-coding upstream 238547 22929488 ~ 22929797 (+)
G215350 NA non-coding upstream 259266 22841344 ~ 22909078 (+)
LOC113546955 NA non-coding downstream 60669 23231518 ~ 23298835 (+)
G215638 fam193b non-coding downstream 144320 23315169 ~ 23315568 (+)
G215637 fam193b non-coding downstream 145977 23316826 ~ 23317147 (+)
G215656 NA non-coding downstream 147896 23318745 ~ 23319138 (+)
G215664 NA non-coding downstream 185342 23356191 ~ 23359559 (+)
G215347 NA other upstream 332442 22835664 ~ 22835902 (+)
trnat-cgu_7 NA other upstream 387768 22780286 ~ 22780576 (+)
higd2a higd2a other upstream 398708 22765814 ~ 22769636 (+)
LOC113546930 LOC108275153 other upstream 677433 22463100 ~ 22490911 (+)
LOC113546919 LOC108278588 other downstream 560605 23731454 ~ 23741390 (+)
igfbp7 igfbp7 other downstream 571633 23742482 ~ 23748131 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other downstream 723398 23894247 ~ 23920403 (+)
rbfox1 rbfox1,LOC107733849 other downstream 868059 24038908 ~ 24330000 (+)
G216197 NA other downstream 1286221 24457070 ~ 24458004 (+)

Expression


Co-expression Network