LOC113546949 (LOC108277208)


Basic Information

Item Value
gene id LOC113546949
gene name LOC108277208
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23141714 ~ 23143760 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947058.2
GAGGGCGAGAGAAAAGGGGAGATAACGAAACCGGAAGAAACCCTCCAACGGGCTCGTGCAGCTGAGCTCGCCCAGTTCCTGCCTCCGAGAACATGCAGCTTCGGTCTTAACCATAAACTTCACAAGACGTCTTTTAAAGAAGACTTTTCTTGTTAAGAGCAAGATCATGTCATTCCTGGCAGATGTTGTTGAAGTTGGTGGGAATGGAGGAAGTCCTTTTGATTTTGATGGCACTGAACATGGAACCATGTTGAAAAAGATCACGGTGTGGGTCGGTAACTGGCAGGTGAAAGCCATGAAGGTTTGGCTTACTGATGGCCTGTCCAAGCAGTTTGGTGAACCTGGTGGGAATTTTACAGAGTTTATATTTGAAGATGGGGAGCATTTCACCTCCCTTTCACTTTGGGCAAATGGAAATGGAACACGTCTGGGTGCCATCAAATTCAAGACAAATCACTCCCGGGAGTTCTTTGCACGCTTGACAGGATGGGTGCTGCAACCAGAAGTTCCAGTTGATGTTGCTTCTGGGATCTGCATGGGAATCAAAGGACGCTCAGGTTTAGATATTGATTGCTTAGGCTTCATGTTCATTAACACCATCAAGTCTACTGAGCTTACAAATGTTGAGTATCCCACACTTCATGATGTGATACCCAAAGTGGCTGTTGCGGAAATCAAATCCATGACCTACCAGAATAACACTACTGAAACGCAAGAATATAGAATTGAAACCTCCAAAAAAATCACCCAAAAATCCTCCTGGTCTGTTACCGACAGACTGGAATTCATGTTCAGCCTCGAAGTGAAGGCAGGAATTCCACTAATTGCAGAAGGCACAACAAGTTACGAATTCAGAATTGGAGTTGAGAGTACATATGCTTCGGAGACCACTGAAGAGAAGATGGAGCTCTTCtcgtttcctgttaaagtccctCCAGGTAAAACTGTGGATGTGGACATCACAACTGGCCAGGCTACAATTGATCTCCCCTTCAATGGCATAGTCAAGATTACCTGCTATAATGGCAGTGTGCTGCAGTTTAATACCAGTGGAAAGTACAAGGGTGTCACTTACACTGATGGAAAAGTAGTTGTGAATGAATCAGCTAAAAAGCTTGATGGCATATAGGCTTTGaactaaatttaaattaaattaaattaaatggttttaaaagtTCAGTATCATGAATCTCATATATTAGATCATTCAAACTGAGAATGTGTTTGATGCTAGCTTGGTGTTAAATgatttggttttattattagcttttcATAATCATAATGATTCTCttgtctgatttgtttttttcataatcTGTAAACCTTTTAAAACAGTGACTTGATTTATCCTGCTAGGCTTCCAGCGGTGCAGACCCATATTTtttgattaataaaacattctttaaaaaacattcTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947058.2 True 1417 mRNA 0.41 2 23141714 23143760

Neighbor

gene id symbol gene type direction distance location
pdlim7 pdlim7 coding upstream 316481 22781366 ~ 22825233 (+)
rnf44 rnf44 coding upstream 387282 22733735 ~ 22754432 (+)
cckb LOC108274239 coding upstream 519734 22614859 ~ 22621980 (+)
LOC113546929 NA coding upstream 592848 22537502 ~ 22548866 (+)
LOC117598775 NA coding upstream 1472832 21668341 ~ 21668882 (+)
LOC113546924 NA coding downstream 3437 23147197 ~ 23156708 (+)
LOC113546950 NA coding downstream 16703 23160463 ~ 23163243 (+)
LOC113546948 LOC108277208 coding downstream 24584 23168344 ~ 23170849 (+)
atoh1b LOC108277232 coding downstream 139488 23283248 ~ 23285620 (+)
LOC113546963 slc39a8 coding downstream 199201 23342961 ~ 23355343 (+)
G215479 NA non-coding upstream 106055 23035455 ~ 23035659 (+)
G215476 NA non-coding upstream 114095 23026443 ~ 23027619 (+)
G215425 unc5a,LOC107677380,LOC107595741 non-coding upstream 211917 22929488 ~ 22929797 (+)
G215350 NA non-coding upstream 232636 22841344 ~ 22909078 (+)
G215360 unc5a,LOC107750348 non-coding upstream 284293 22854245 ~ 22857421 (+)
LOC113546955 NA non-coding downstream 87758 23231518 ~ 23298835 (+)
G215638 fam193b non-coding downstream 171409 23315169 ~ 23315568 (+)
G215637 fam193b non-coding downstream 173066 23316826 ~ 23317147 (+)
G215656 NA non-coding downstream 174985 23318745 ~ 23319138 (+)
G215664 NA non-coding downstream 212431 23356191 ~ 23359559 (+)
G215347 NA other upstream 305812 22835664 ~ 22835902 (+)
trnat-cgu_7 NA other upstream 361138 22780286 ~ 22780576 (+)
higd2a higd2a other upstream 372078 22765814 ~ 22769636 (+)
LOC113546930 LOC108275153 other upstream 650803 22463100 ~ 22490911 (+)
LOC113546936 NA other upstream 671036 22470179 ~ 22470678 (+)
LOC113546919 LOC108278588 other downstream 587694 23731454 ~ 23741390 (+)
igfbp7 igfbp7 other downstream 598722 23742482 ~ 23748131 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other downstream 750487 23894247 ~ 23920403 (+)
rbfox1 rbfox1,LOC107733849 other downstream 895148 24038908 ~ 24330000 (+)
G216197 NA other downstream 1313310 24457070 ~ 24458004 (+)

Expression


Co-expression Network