atoh1b (LOC108277232)


Basic Information

Item Value
gene id atoh1b
gene name LOC108277232
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23283248 ~ 23285620 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947067.2
CTCCTAGTAgaggtgctgggatttgaaaaGGTGCCTGGAGGAGTGTTGAAGAGCATCAAGGATTTTTGCtccatattatttttttattattattattatttttcctttgcTGGAATTAATAAAACTGACCCACATCAAGGCCTCTACACGTTTTATTTTCCACCAAGTCTTATATTCTGACCATGATGGCCAATGCTGAACTTTTGACTTGGTCGGAAGCGCACGTGCCAAAGCGCCCGCAGGACATCCCCCAGTCCGAGCGCGCGACGCTGACCCGCAGTGACCCGCGGGGCTGGATGAGCGCGCACGCGCATGCCCCCGCCGCGGCCCGTCCCAGTCATTACGCGCGCGCCTCGCCCGACGTCACTCCGGACACCTCGCCGGACCCTGTCGCCGCCGTTGCCCCTAAAGAGCATCCTCTGGGCGCCGCGCACAGGCACCGGCGCGTCGCGGCGAACGCGCGCGAGCGCCGGCGCATGCACGGCCTGAACCGCGCGTTCGACCGCCTGCGCAGCGTCATCCCTTCCCTGGAGAACGACAAGAAGCTGTCCAAGTACGACACGCTGCAGATGGCGCAGATCTACATCGCCGAACTGTCCGAGCTGCTCGAGGGCGTTGCGGCGCGTGGCACCGGGGACGCATCTCGCGCGCGTCGCTGCTTTCAGACGCCGTGCGCCGGTTACGCCGTGGACGCGACGACGACGACAACGACGCCATCGGCGGCTCCGGTGACCGAAGGACACGTGCTGATCCTGTCCGCGCCCTCGGCTCACTTTGATCCCGAAAAAATGGAGCTCGCGTCGGCCAACGGCAGCGACGGAGAGTCTTCACACTGCAGTGACGCCGAAGAAGGACATCCGGGAACTCAGTGAGCACCTGatggggagggaaaaaaactgcGTATATATGAGCAAATGACTGTGTAGTGATTATTAAATACCAAGACACCGATATTTTCTAATGACACTAAAGCTCAGCTGTGAAGCCCCAGGCTGGGTGAAGAGGAAGCCCCTGAATGGCCGGAAGTACCTAACACACACCTAATACTAATTTCAAAcctaaaacagcatgaaacagaatactttttattcattgccacacaatttatttatttttttttactaacaaaTTTCCAACTAAAAGATTTTACTATTCACAAACATTCTAGCTAACTTGCCTAACTCcagtttgttgttttggttAATGTGAGCTATCTATTTAGTTAATTTGGATAGCTAACTAACAGTAAGCACCAAGAGTTAAGTCAGTTCGCTAACTGTATTTATACCACATTCACCATCACTATATTCTCGAGTCAGAAGgggttgatttattttctataacagcggctctgataGTAGCATAGTGTGgtgaatatatacatacacacatatggtTAAGCTTTCCTTAAGGAgagttttccgccatgggaaagtcttcacaaCACTAAGtgtatctataaatggataaaaagtgtcacATGTATGACAGAAATTACAATTTCCTGTGCTATAAGAGTAGTTTCACACTTCTGACTTTCCAACGAGCGGAGACTTCTGTCCAGTCTGAGGCTTTTCCCAGCCGAGGGCTTCGTCTGCAGGGCTGTCGCTGGACGGTGAGATTCCTAGCTGTGCCAATCCTGTACTTAAACGAGCTTTTGTTCACAGATTTTACATAATATCATTAAAACAGGGCGTTATCAGTAATTGCACTGTAAACACACTTCCCTTTACTTTTATTGTTCTCATTTTTACCGTCTCGTCTTCTGTTCAAACAGCCACATCGATTGTTTTTATCTGGGACGCTCGAGTGTTTACTCAGTGTAAACTAGTTTAAAGTTTTACAAAAGAAGCTCACCTTaacttcacttttattttctagCTCACCCTTCATCTCATTtctgatttctttctctttttcttctttgttttctaGGAGAAAGGCATGATTAGCCTACAATAGCCCATTTAAATAAAGAGTCTGTGTACAGGACAGACTGAACCATTTgtgtctttaaaaaagaaaggacagaaaagcctacagaaatatttttttagcattagAGTCAGCTTATTTATTCTACTaatattagtgtgtttatgactTTTTGATATGTACAATTGGAGaccaaaacaaaatgacatggTTAAACACAGGCCtgctatattttttttgtttgtttttttatattttttggtcAAATTATTTGGAAGATTTTCTCTGATATACCAGTATTGTAAAGGCCAATAACACAGCAATAATCTTTCACAAACAAGGTATTATTGCGGCCCTAAAAATAAACCTGCGATTGTATGTGGGCTCATAAAACTattatctctgtctgtgttttagtAGACATTAAAGGGGACCAAA

Function

NR:

description
PREDICTED: protein atonal homolog 1-like

GO:

id name namespace
GO:0048840 otolith development biological_process
GO:0042668 auditory receptor cell fate determination biological_process

KEGG:

id description
K09083 ATOH1_7; atonal protein 1/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947067.2 True 2373 mRNA 0.45 1 23283248 23285620

Neighbor

gene id symbol gene type direction distance location
LOC113546948 LOC108277208 coding upstream 112399 23168344 ~ 23170849 (+)
LOC113546950 NA coding upstream 120005 23160463 ~ 23163243 (+)
LOC113546924 NA coding upstream 126540 23147197 ~ 23156708 (+)
LOC113546949 LOC108277208 coding upstream 139488 23141714 ~ 23143760 (+)
pdlim7 pdlim7 coding upstream 458015 22781366 ~ 22825233 (+)
LOC113546963 slc39a8 coding downstream 57341 23342961 ~ 23355343 (+)
LOC113546983 LOC108277145,LOC108432419,LOC103366337,LOC107082714,LOC107697613,LOC105918713 coding downstream 172183 23457803 ~ 23554508 (+)
cpxm1b LOC108274665,LOC105911438,LOC102297474,LOC102196974,LOC102797758 coding downstream 426899 23712519 ~ 23730112 (+)
noa1 noa1 coding downstream 481954 23767574 ~ 23772974 (+)
eef2kmt eef2kmt coding downstream 488760 23774380 ~ 23778006 (+)
G215479 NA non-coding upstream 247589 23035455 ~ 23035659 (+)
G215476 NA non-coding upstream 255629 23026443 ~ 23027619 (+)
G215425 unc5a,LOC107677380,LOC107595741 non-coding upstream 353451 22929488 ~ 22929797 (+)
G215350 NA non-coding upstream 374170 22841344 ~ 22909078 (+)
G215638 fam193b non-coding downstream 29549 23315169 ~ 23315568 (+)
G215637 fam193b non-coding downstream 31206 23316826 ~ 23317147 (+)
G215656 NA non-coding downstream 33125 23318745 ~ 23319138 (+)
G215664 NA non-coding downstream 70571 23356191 ~ 23359559 (+)
G215666 NA non-coding downstream 78738 23364358 ~ 23364580 (+)
G215621 LOC108277208 other upstream 112695 23137246 ~ 23170553 (+)
G215347 NA other upstream 447346 22835664 ~ 22835902 (+)
trnat-cgu_7 NA other upstream 502672 22780286 ~ 22780576 (+)
higd2a higd2a other upstream 513612 22765814 ~ 22769636 (+)
LOC113546930 LOC108275153 other upstream 792337 22463100 ~ 22490911 (+)
LOC113546919 LOC108278588 other downstream 445834 23731454 ~ 23741390 (+)
igfbp7 igfbp7 other downstream 456862 23742482 ~ 23748131 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other downstream 608627 23894247 ~ 23920403 (+)
rbfox1 rbfox1,LOC107733849 other downstream 753288 24038908 ~ 24330000 (+)
G216197 NA other downstream 1171450 24457070 ~ 24458004 (+)

Expression


Co-expression Network